Rpl18a (ribosomal protein L18A) - Rat Genome Database

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Gene: Rpl18a (ribosomal protein L18A) Rattus norvegicus
Analyze
Symbol: Rpl18a
Name: ribosomal protein L18A
RGD ID: 1302976
Description: Predicted to be a structural constituent of ribosome. Involved in response to antineoplastic agent. Located in ribosome. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Biomarker of alcohol use disorder. Orthologous to human RPL18A (ribosomal protein L18a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L18a; large ribosomal subunit protein eL20; MGC72957; similar to 60S ribosomal protein L18a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,576,467 - 18,578,653 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl170,166,729 - 70,167,654 (+)EnsemblGRCr8
GRCr8 Ensembl1618,576,551 - 18,578,574 (+)EnsemblGRCr8
mRatBN7.21618,542,555 - 18,544,578 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,493,819 - 61,494,744 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1618,542,566 - 18,545,546 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1618,584,772 - 18,586,795 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,717,450 - 19,719,473 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,637,713 - 18,639,736 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,293,277 - 20,295,283 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,293,229 - 20,295,294 (+)Ensemblrn6Rnor6.0
Rnor_5.01620,150,821 - 20,152,827 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41619,042,063 - 19,044,069 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1618,735,212 - 18,737,218 (+)NCBICelera
RGSC_v3.11619,042,060 - 19,044,067 (+)NCBI
Cytogenetic Map16p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
beta-lapachone  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
glafenine  (EXP)
glucose  (ISO)
haloperidol  (ISO)
hydralazine  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
potassium chromate  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
stigmasterol  (ISO)
streptozocin  (EXP)
thiram  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Cheng D, etal., Mol Cell Proteomics. 2006 Jun;5(6):1158-70. doi: 10.1074/mcp.D500009-MCP200. Epub 2006 Feb 28.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Isolation of cDNAs representing dithiolethione-responsive genes. Primiano T, etal., Carcinogenesis 1996 Nov;17(11):2297-303.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Differential expression of diacylglycerol kinase iota and L18A mRNAs in the brains of alcohol-preferring AA and alcohol-avoiding ANA rats. Sommer W, etal., Mol Psychiatry. 2001 Jan;6(1):103-8; 5.
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
13. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins La, Lb, Lf, P1, P2, L13', L14, L18', L20, and L38. Tsurugi K, etal., J Biol Chem. 1978 Feb 10;253(3):946-55.
Additional References at PubMed
PMID:2541017   PMID:7654221   PMID:12962325   PMID:15489334   PMID:19946888   PMID:22658674   PMID:22681889   PMID:24625528   PMID:25211037   PMID:25957688   PMID:30053369  


Genomics

Comparative Map Data
Rpl18a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,576,467 - 18,578,653 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl170,166,729 - 70,167,654 (+)EnsemblGRCr8
GRCr8 Ensembl1618,576,551 - 18,578,574 (+)EnsemblGRCr8
mRatBN7.21618,542,555 - 18,544,578 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,493,819 - 61,494,744 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1618,542,566 - 18,545,546 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1618,584,772 - 18,586,795 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,717,450 - 19,719,473 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,637,713 - 18,639,736 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,293,277 - 20,295,283 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,293,229 - 20,295,294 (+)Ensemblrn6Rnor6.0
Rnor_5.01620,150,821 - 20,152,827 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41619,042,063 - 19,044,069 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1618,735,212 - 18,737,218 (+)NCBICelera
RGSC_v3.11619,042,060 - 19,044,067 (+)NCBI
Cytogenetic Map16p14NCBI
RPL18A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,859,910 - 17,863,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,859,868 - 17,864,153 (+)Ensemblhg38GRCh38
GRCh371917,970,719 - 17,974,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,831,727 - 17,835,124 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341917,831,730 - 17,835,124NCBI
Celera1917,872,445 - 17,875,838 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,536,059 - 17,539,505 (+)NCBIHuRef
CHM1_11917,970,422 - 17,973,868 (+)NCBICHM1_1
T2T-CHM13v2.01917,993,996 - 17,997,405 (+)NCBIT2T-CHM13v2.0
Rpl18a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,347,366 - 71,350,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,347,366 - 71,350,056 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38870,894,722 - 70,897,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,894,722 - 70,897,412 (-)Ensemblmm10GRCm38
MGSCv37873,418,621 - 73,421,342 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36873,824,368 - 73,826,387 (-)NCBIMGSCv36mm8
Celera873,456,025 - 73,458,747 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.38NCBI
Rpl18a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,384,209 - 3,387,743 (-)Ensembl
ChiLan1.0NW_0049555243,385,056 - 3,387,743 (-)NCBIChiLan1.0ChiLan1.0
RPL18A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,724,702 - 22,728,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,731,503 - 21,734,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,341,788 - 17,345,278 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,315,535 - 18,318,978 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,315,535 - 18,318,978 (+)EnsemblpanPan2panpan1.1
RPL18A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,036,543 - 45,040,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,036,510 - 45,039,935 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2044,948,492 - 44,952,001 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02045,521,261 - 45,524,770 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,519,522 - 45,524,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,758,115 - 44,761,624 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,168,389 - 45,171,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,444,343 - 45,447,861 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,643,098 - 203,648,946 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,194,254 - 3,198,155 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,194,952 - 3,198,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL18A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,890,796 - 59,897,024 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1259,892,788 - 59,906,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,462,228 - 59,465,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL18A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,335,899 - 16,339,446 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,335,857 - 16,339,620 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660743,047,961 - 3,051,518 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl18a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,395,810 - 1,400,043 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249081,395,752 - 1,398,595 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl18a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11313,139,771 - 13,140,727 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl18a
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:89
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000025421
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161574800625801629Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)161627818427244292Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
PMC83998P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,544,171 - 18,544,558 (+)MAPPERmRatBN7.2
Rnor_6.01620,294,877 - 20,295,263NCBIRnor6.0
Rnor_5.01620,152,421 - 20,152,807UniSTSRnor5.0
RGSC_v3.41619,043,663 - 19,044,049UniSTSRGSC3.4
Celera1618,736,812 - 18,737,198UniSTS
Cytogenetic Map16p14UniSTS
MARC_4117-4118:991938388:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,543,748 - 18,543,950 (+)MAPPERmRatBN7.2
mRatBN7.2648,544,181 - 48,544,292 (+)MAPPERmRatBN7.2
Rnor_6.0651,246,027 - 51,246,137NCBIRnor6.0
Rnor_6.01620,294,454 - 20,294,655NCBIRnor6.0
Rnor_5.01620,151,998 - 20,152,199UniSTSRnor5.0
Rnor_5.0659,916,676 - 59,916,786UniSTSRnor5.0
RGSC_v3.4650,215,830 - 50,215,940UniSTSRGSC3.4
RGSC_v3.41619,043,240 - 19,043,441UniSTSRGSC3.4
Celera1618,736,389 - 18,736,590UniSTS
Celera647,746,028 - 47,746,138UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map6q16UniSTS
RH125499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,543,705 - 18,544,026 (+)MAPPERmRatBN7.2
Rnor_6.01620,294,411 - 20,294,731NCBIRnor6.0
Rnor_5.01620,151,955 - 20,152,275UniSTSRnor5.0
RGSC_v3.41619,043,197 - 19,043,517UniSTSRGSC3.4
Celera1618,736,346 - 18,736,666UniSTS
Cytogenetic Map16p14UniSTS
D14S105E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,544,292 - 18,544,468 (+)MAPPERmRatBN7.2
Rnor_6.01620,294,998 - 20,295,173NCBIRnor6.0
Rnor_5.01620,152,542 - 20,152,717UniSTSRnor5.0
RGSC_v3.41619,043,784 - 19,043,959UniSTSRGSC3.4
Celera1618,736,933 - 18,737,108UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_212510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025421   ⟹   ENSRNOP00000025421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1618,576,551 - 18,578,574 (+)Ensembl
mRatBN7.2 Ensembl1618,542,566 - 18,544,578 (+)Ensembl
Rnor_6.0 Ensembl1620,293,229 - 20,295,294 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109414   ⟹   ENSRNOP00000095031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,542,566 - 18,545,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119634   ⟹   ENSRNOP00000084265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1618,576,551 - 18,578,447 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128985   ⟹   ENSRNOP00000100122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1618,576,749 - 18,578,574 (+)Ensembl
RefSeq Acc Id: NM_212510   ⟹   NP_997675
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81618,576,551 - 18,578,574 (+)NCBI
mRatBN7.21618,542,555 - 18,544,578 (+)NCBI
Rnor_6.01620,293,277 - 20,295,283 (+)NCBI
Rnor_5.01620,150,821 - 20,152,827 (+)NCBI
RGSC_v3.41619,042,063 - 19,044,069 (+)RGD
Celera1618,735,212 - 18,737,218 (+)RGD
Sequence:
RefSeq Acc Id: XM_063275155   ⟹   XP_063131225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81618,576,467 - 18,578,653 (+)NCBI
Protein Sequences
Protein RefSeqs NP_997675 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131225 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58498 (Get FASTA)   NCBI Sequence Viewer  
  EDL90752 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025421
  ENSRNOP00000025421.4
GenBank Protein P62718 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_997675   ⟸   NM_212510
- UniProtKB: P62718 (UniProtKB/Swiss-Prot),   A6K9Y4 (UniProtKB/TrEMBL),   F1M0K6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025421   ⟸   ENSRNOT00000025421
Ensembl Acc Id: ENSRNOP00000095031   ⟸   ENSRNOT00000109414
RefSeq Acc Id: XP_063131225   ⟸   XM_063275155
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM85 (UniProtKB/TrEMBL),   A6K9Y3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084265   ⟸   ENSRNOT00000119634
Ensembl Acc Id: ENSRNOP00000100122   ⟸   ENSRNOT00000128985
Protein Domains
Large ribosomal subunit protein eL20

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62718-F1-model_v2 AlphaFold P62718 1-176 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700011
Promoter ID:EPDNEW_R10534
Type:multiple initiation site
Name:Rpl18a_1
Description:ribosomal protein L18A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01620,293,277 - 20,293,337EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302976 AgrOrtholog
BioCyc Gene G2FUF-11817 BioCyc
Ensembl Genes ENSRNOG00000018795 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000042547 Ensembl
Ensembl Transcript ENSRNOT00000025421 ENTREZGENE
  ENSRNOT00000025421.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919102 IMAGE-MGC_LOAD
InterPro 50S_L18Ae/Ribosomal_L18a/L20 UniProtKB/Swiss-Prot
  Ribosomal_L18a//L18Ae/LX UniProtKB/Swiss-Prot
  Ribosomal_L18a/L20_eukaryotes UniProtKB/Swiss-Prot
KEGG Report rno:290641 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72957 IMAGE-MGC_LOAD
NCBI Gene 290641 ENTREZGENE
PANTHER PTHR10052 UniProtKB/Swiss-Prot
Pfam Ribosomal_L18A UniProtKB/Swiss-Prot
PhenoGen Rpl18a PhenoGen
PIRSF Ribosomal_L18a UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018795 RatGTEx
  ENSRNOG00000042547 RatGTEx
Superfamily-SCOP RplX-like UniProtKB/Swiss-Prot
UniProt A0A8I6AM85 ENTREZGENE
  A0A8I6GBN0_RAT UniProtKB/TrEMBL
  A0ABK0L5Z5_RAT UniProtKB/TrEMBL
  A6K9Y3 ENTREZGENE, UniProtKB/TrEMBL
  A6K9Y4 ENTREZGENE, UniProtKB/TrEMBL
  F1M0K6 ENTREZGENE, UniProtKB/TrEMBL
  P62718 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P11249 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Rpl18a  ribosomal protein L18A  MGC72957  similar to 60S ribosomal protein L18a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 MGC72957  similar to 60S ribosomal protein L18a      Symbol and Name status set to provisional 70820 PROVISIONAL