Spmip8 (sperm microtubule inner protein 8) - Rat Genome Database

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Gene: Spmip8 (sperm microtubule inner protein 8) Rattus norvegicus
Analyze
Symbol: Spmip8 (Ensembl: Tepp)
Name: sperm microtubule inner protein 8 (Ensembl:testis, prostate and placenta expressed)
RGD ID: 735198
Description: Predicted to be located in motile cilium. Predicted to be active in axonemal A tubule inner sheath. Orthologous to human SPMIP8 (sperm microtubule inner protein 8); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291850; Tepp; testis, prostate and placenta expressed; testis, prostate and placenta-expressed protein; testis/prostate/placenta-expressed protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,713,904 - 9,728,309 (-)NCBIGRCr8
mRatBN7.2199,713,281 - 9,722,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,712,641 - 9,722,257 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,678,277 - 9,687,293 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,445,107 - 10,454,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,731,437 - 9,740,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,126,346 - 10,138,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,129,641 - 10,212,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,113,530 - 10,121,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,173,085 - 10,182,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,177,910 - 10,186,905 (-)NCBI
Celera199,606,145 - 9,615,083 (-)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. TEPP, a new gene specifically expressed in testis, prostate, and placenta and well conserved in chordates. Bera TK, etal., Biochem Biophys Res Commun 2003 Dec 26;312(4):1209-15.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Spmip8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,713,904 - 9,728,309 (-)NCBIGRCr8
mRatBN7.2199,713,281 - 9,722,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,712,641 - 9,722,257 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,678,277 - 9,687,293 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,445,107 - 10,454,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,731,437 - 9,740,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,126,346 - 10,138,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,129,641 - 10,212,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,113,530 - 10,121,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,173,085 - 10,182,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,177,910 - 10,186,905 (-)NCBI
Celera199,606,145 - 9,615,083 (-)NCBICelera
Cytogenetic Map19p13NCBI
SPMIP8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,976,544 - 57,988,116 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,976,435 - 57,988,116 (+)EnsemblGRCh38hg38GRCh38
GRCh371658,010,448 - 58,022,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,567,840 - 56,579,521 (+)NCBINCBI36Build 36hg18NCBI36
Celera1642,507,657 - 42,519,348 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,877,301 - 43,889,013 (+)NCBIHuRef
CHM1_11659,417,401 - 59,429,094 (+)NCBICHM1_1
T2T-CHM13v2.01663,771,815 - 63,783,405 (+)NCBIT2T-CHM13v2.0
Spmip8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,038,148 - 96,053,239 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,037,194 - 96,052,951 (+)EnsemblGRCm39 Ensembl
GRCm38895,311,569 - 95,326,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,310,566 - 95,326,323 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,835,415 - 97,845,228 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36898,200,644 - 98,210,457 (+)NCBIMGSCv36mm8
Celera899,632,461 - 99,642,294 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Spmip8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,551,428 - 15,558,152 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,551,435 - 15,558,054 (+)NCBIChiLan1.0ChiLan1.0
SPMIP8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,447,389 - 67,460,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,368,331 - 73,381,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,253,044 - 38,265,029 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,384,584 - 57,396,210 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,384,584 - 57,396,201 (+)Ensemblpanpan1.1panPan2
SPMIP8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,563,354 - 58,571,483 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,563,350 - 58,571,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,193,148 - 55,201,073 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,102,087 - 59,110,019 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,102,083 - 59,110,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,933,473 - 55,941,369 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,940,990 - 56,948,886 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,834,267 - 57,842,164 (-)NCBIUU_Cfam_GSD_1.0
Spmip8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,668,144 - 49,675,940 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,913,992 - 9,920,926 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,913,992 - 9,920,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMIP8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,832,473 - 19,838,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,832,473 - 19,838,181 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,773,092 - 17,779,057 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,907,070 - 43,918,918 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,908,124 - 43,918,775 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,259,192 - 32,269,565 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,176,607 - 28,192,360 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,174,665 - 28,193,241 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spmip8
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:94
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000018082
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat

Markers in Region
BE104129  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,716,205 - 9,716,357 (+)MAPPERmRatBN7.2
Rnor_6.01910,132,622 - 10,132,773NCBIRnor6.0
Rnor_5.01910,116,455 - 10,116,606UniSTSRnor5.0
RGSC_v3.41910,176,010 - 10,176,161UniSTSRGSC3.4
Celera199,609,072 - 9,609,223UniSTS
RH 3.4 Map1976.8UniSTS
Cytogenetic Map19p13UniSTS
BF391103  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map1991.3UniSTS
Cytogenetic Map19p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 11 22 6 19 6 4 6 40 11 7 11 4
Below cutoff 20 5 5 5 4 5 16 12 18 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000018082   ⟹   ENSRNOP00000018082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,713,281 - 9,722,257 (-)Ensembl
Rnor_6.0 Ensembl1910,129,697 - 10,138,159 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082822   ⟹   ENSRNOP00000073569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,713,421 - 9,722,257 (-)Ensembl
Rnor_6.0 Ensembl1910,129,641 - 10,212,050 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104204   ⟹   ENSRNOP00000092471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,712,641 - 9,722,257 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117120   ⟹   ENSRNOP00000089149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,713,281 - 9,720,710 (-)Ensembl
RefSeq Acc Id: NM_201655   ⟹   NP_970617
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,719,333 - 9,728,309 (-)NCBI
mRatBN7.2199,713,281 - 9,722,257 (-)NCBI
Rnor_6.01910,129,697 - 10,138,159 (-)NCBI
Rnor_5.01910,113,530 - 10,121,992 (-)NCBI
RGSC_v3.41910,173,085 - 10,182,079 (-)RGD
Celera199,606,145 - 9,615,083 (-)RGD
Sequence:
RefSeq Acc Id: XM_063277850   ⟹   XP_063133920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,713,904 - 9,728,265 (-)NCBI
RefSeq Acc Id: XM_063277851   ⟹   XP_063133921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,713,904 - 9,728,265 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_970617   ⟸   NM_201655
- UniProtKB: Q6IMG9 (UniProtKB/Swiss-Prot),   A0A8L2R884 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073569   ⟸   ENSRNOT00000082822
RefSeq Acc Id: ENSRNOP00000018082   ⟸   ENSRNOT00000018082
RefSeq Acc Id: ENSRNOP00000092471   ⟸   ENSRNOT00000104204
RefSeq Acc Id: ENSRNOP00000089149   ⟸   ENSRNOT00000117120
RefSeq Acc Id: XP_063133921   ⟸   XM_063277851
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AE00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133920   ⟸   XM_063277850
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IMG9-F1-model_v2 AlphaFold Q6IMG9 1-216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700932
Promoter ID:EPDNEW_R11456
Type:initiation region
Name:Tepp_1
Description:testis, prostate and placenta expressed
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,138,069 - 10,138,129EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735198 AgrOrtholog
BioCyc Gene G2FUF-6528 BioCyc
Ensembl Genes ENSRNOG00000013465 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021873 UniProtKB/Swiss-Prot
  ENSRNOG00060014040 UniProtKB/Swiss-Prot
  ENSRNOG00065012055 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018082 ENTREZGENE
  ENSRNOT00000018082.4 UniProtKB/Swiss-Prot
  ENSRNOT00000082822.2 UniProtKB/TrEMBL
  ENSRNOT00000104204.1 UniProtKB/TrEMBL
  ENSRNOT00000117120.1 UniProtKB/TrEMBL
  ENSRNOT00055037553 UniProtKB/Swiss-Prot
  ENSRNOT00060024064 UniProtKB/Swiss-Prot
  ENSRNOT00065019606 UniProtKB/Swiss-Prot
InterPro TEPP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291850 UniProtKB/Swiss-Prot
NCBI Gene 291850 ENTREZGENE
PANTHER PTHR35348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TESTIS, PROSTATE AND PLACENTA-EXPRESSED PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spmip8 PhenoGen
RatGTEx ENSRNOG00000013465 RatGTEx
  ENSRNOG00055021873 RatGTEx
  ENSRNOG00060014040 RatGTEx
  ENSRNOG00065012055 RatGTEx
UniProt A0A8I6A7J8_RAT UniProtKB/TrEMBL
  A0A8I6AE00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R884 ENTREZGENE, UniProtKB/TrEMBL
  Q6IMG9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Spmip8  sperm microtubule inner protein 8  Tepp  testis, prostate and placenta expressed  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Tepp  testis, prostate and placenta expressed  Tepp  testis/prostate/placenta-expressed protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Tepp  testis/prostate/placenta-expressed protein  LOC291850  TEPP  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression specifically expressed in testis, prostate, and placenta 1302831