Ndufaf3 (NADH:ubiquinone oxidoreductase complex assembly factor 3) - Rat Genome Database

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Gene: Ndufaf3 (NADH:ubiquinone oxidoreductase complex assembly factor 3) Rattus norvegicus
Analyze
Symbol: Ndufaf3
Name: NADH:ubiquinone oxidoreductase complex assembly factor 3
RGD ID: 708545
Description: Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in nucleus. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 18. Orthologous to human NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; 9-cis-retinoic acid.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: LOC56769; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3; NADH dehydrogenase (ubiquinone) complex I, assembly factor 3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; nuclear protein E3-3; RGD708545
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,139,891 - 118,141,723 (-)NCBIGRCr8
mRatBN7.28109,261,362 - 109,263,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,261,363 - 109,263,194 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,879,614 - 114,881,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,078,948 - 113,080,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,921,588 - 110,923,420 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,351,628 - 117,353,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,351,629 - 117,353,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,696,131 - 116,698,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,611,624 - 113,613,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,631,358 - 113,632,446 (-)NCBI
Celera8108,557,136 - 108,558,968 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. 2P1, a novel male mouse cDNA specifically expressed during meiosis. Hammami-Hamza S, etal., Int J Dev Biol 2003 Feb;47(1):71-6.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9349717   PMID:12477932   PMID:15489334   PMID:18614015   PMID:19463981  


Genomics

Comparative Map Data
Ndufaf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,139,891 - 118,141,723 (-)NCBIGRCr8
mRatBN7.28109,261,362 - 109,263,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,261,363 - 109,263,194 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,879,614 - 114,881,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,078,948 - 113,080,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,921,588 - 110,923,420 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,351,628 - 117,353,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,351,629 - 117,353,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,696,131 - 116,698,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,611,624 - 113,613,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,631,358 - 113,632,446 (-)NCBI
Celera8108,557,136 - 108,558,968 (-)NCBICelera
Cytogenetic Map8q32NCBI
NDUFAF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,020,452 - 49,023,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,020,459 - 49,023,495 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,057,885 - 49,060,928 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,032,912 - 49,035,932 (+)NCBINCBI36Build 36hg18NCBI36
Celera349,014,631 - 49,017,650 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,115,773 - 49,118,793 (+)NCBIHuRef
CHM1_1349,010,469 - 49,013,489 (+)NCBICHM1_1
T2T-CHM13v2.0349,048,492 - 49,051,535 (+)NCBIT2T-CHM13v2.0
Ndufaf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,442,786 - 108,444,635 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,442,736 - 108,444,633 (-)EnsemblGRCm39 Ensembl
GRCm389108,565,587 - 108,567,436 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,565,537 - 108,567,434 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,468,196 - 108,469,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,423,968 - 108,425,445 (-)NCBIMGSCv36mm8
Celera9108,177,106 - 108,178,583 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.5NCBI
Ndufaf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,045,852 - 1,046,594 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,045,854 - 1,046,738 (+)NCBIChiLan1.0ChiLan1.0
NDUFAF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,000,312 - 49,002,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,005,075 - 49,006,873 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,945,667 - 48,947,933 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,026,822 - 50,029,260 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,026,989 - 50,029,260 (+)Ensemblpanpan1.1panPan2
NDUFAF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,141,550 - 40,143,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,141,552 - 40,172,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2040,059,735 - 40,061,389 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,498,728 - 40,500,382 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,498,730 - 40,529,984 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,865,331 - 39,866,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,269,109 - 40,270,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,548,619 - 40,550,273 (-)NCBIUU_Cfam_GSD_1.0
Ndufaf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,986,373 - 63,987,648 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529747,021 - 748,695 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529746,620 - 748,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,656,948 - 31,659,220 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,656,941 - 31,658,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,899,945 - 34,901,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,421,359 - 10,423,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,421,996 - 10,423,510 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,658,641 - 156,661,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,069,115 - 3,070,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,069,083 - 3,070,675 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndufaf3
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:129
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000027262
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat

Markers in Region
RH141083  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,261,770 - 109,262,061 (+)MAPPERmRatBN7.2
Rnor_6.08117,352,037 - 117,352,327NCBIRnor6.0
Rnor_5.08116,696,540 - 116,696,830UniSTSRnor5.0
RGSC_v3.48113,612,033 - 113,612,323UniSTSRGSC3.4
Celera8108,557,545 - 108,557,835UniSTS
RH 3.4 Map81118.2UniSTS
Cytogenetic Map8q32UniSTS
AI171562  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,261,412 - 109,261,574 (+)MAPPERmRatBN7.2
Rnor_6.08117,351,679 - 117,351,840NCBIRnor6.0
Rnor_5.08116,696,182 - 116,696,343UniSTSRnor5.0
RGSC_v3.48113,611,675 - 113,611,836UniSTSRGSC3.4
Celera8108,557,187 - 108,557,348UniSTS
RH 3.4 Map81116.8UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 53 37 19 37 8 11 74 35 41 11 8
Low 4 4 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW433586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF387376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB609164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK595813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO394660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV115574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027262   ⟹   ENSRNOP00000027262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,261,363 - 109,263,194 (-)Ensembl
Rnor_6.0 Ensembl8117,351,629 - 117,353,672 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110739   ⟹   ENSRNOP00000091967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,261,367 - 109,263,175 (-)Ensembl
RefSeq Acc Id: NM_001033971   ⟹   NP_001029143
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,139,891 - 118,141,723 (-)NCBI
mRatBN7.28109,261,362 - 109,263,194 (-)NCBI
Rnor_6.08117,351,628 - 117,353,460 (-)NCBI
Rnor_5.08116,696,131 - 116,698,175 (-)NCBI
RGSC_v3.48113,611,624 - 113,613,668 (-)RGD
Celera8108,557,136 - 108,558,968 (-)NCBI
Sequence:
RefSeq Acc Id: NM_020080   ⟹   NP_064465
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,139,891 - 118,141,723 (-)NCBI
mRatBN7.28109,261,362 - 109,263,194 (-)NCBI
Rnor_6.08117,351,628 - 117,353,460 (-)NCBI
Rnor_5.08116,696,131 - 116,698,175 (-)NCBI
RGSC_v3.48113,611,624 - 113,613,668 (-)RGD
Celera8108,557,136 - 108,558,968 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_064465   ⟸   NM_020080
- Peptide Label: isoform a
- UniProtKB: Q6AXV1 (UniProtKB/Swiss-Prot),   O08777 (UniProtKB/Swiss-Prot),   Q78E24 (UniProtKB/Swiss-Prot),   O08776 (UniProtKB/Swiss-Prot),   A6I367 (UniProtKB/TrEMBL),   A6I368 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029143   ⟸   NM_001033971
- Peptide Label: isoform b
- UniProtKB: A6I368 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027262   ⟸   ENSRNOT00000027262
RefSeq Acc Id: ENSRNOP00000091967   ⟸   ENSRNOT00000110739

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08776-F1-model_v2 AlphaFold O08776 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696309
Promoter ID:EPDNEW_R6833
Type:multiple initiation site
Name:Ndufaf3_1
Description:NADH:ubiquinone oxidoreductase complex assembly factor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6834  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08117,352,997 - 117,353,057EPDNEW
RGD ID:13696310
Promoter ID:EPDNEW_R6834
Type:multiple initiation site
Name:Ndufaf3_2
Description:NADH:ubiquinone oxidoreductase complex assembly factor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6833  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08117,353,648 - 117,353,708EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708545 AgrOrtholog
BioCyc Gene G2FUF-29134 BioCyc
Ensembl Genes ENSRNOG00000020068 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055008146 UniProtKB/Swiss-Prot
  ENSRNOG00060027827 UniProtKB/Swiss-Prot
  ENSRNOG00065006733 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027262 ENTREZGENE
  ENSRNOT00000027262.6 UniProtKB/Swiss-Prot
  ENSRNOT00000110739 ENTREZGENE
  ENSRNOT00000110739.1 UniProtKB/Swiss-Prot
  ENSRNOT00055013794 UniProtKB/Swiss-Prot
  ENSRNOT00060048313 UniProtKB/Swiss-Prot
  ENSRNOT00065010464 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.1230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134644 IMAGE-MGC_LOAD
InterPro MTH938-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDUF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDUFAF3/AAMDC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:56769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94445 IMAGE-MGC_LOAD
NCBI Gene 56769 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR PROTEIN E3-3 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam DUF498 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndufaf3 PhenoGen
RatGTEx ENSRNOG00000020068 RatGTEx
  ENSRNOG00055008146 RatGTEx
  ENSRNOG00060027827 RatGTEx
  ENSRNOG00065006733 RatGTEx
Superfamily-SCOP MTH938-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6I367 ENTREZGENE, UniProtKB/TrEMBL
  A6I368 ENTREZGENE, UniProtKB/TrEMBL
  NDUF3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  O08777 ENTREZGENE
  Q6AXV1 ENTREZGENE
  Q78E24 ENTREZGENE
UniProt Secondary O08777 UniProtKB/Swiss-Prot
  Q6AXV1 UniProtKB/Swiss-Prot
  Q78E24 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-23 Ndufaf3  NADH:ubiquinone oxidoreductase complex assembly factor 3  Ndufaf3  NADH dehydrogenase (ubiquinone) complex I, assembly factor 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-05 Ndufaf3  NADH dehydrogenase (ubiquinone) complex I, assembly factor 3  Ndufaf3  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-12 Ndufaf3  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3  RGD708545  nuclear protein E3-3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 RGD708545  nuclear protein E3-3  LOC56769    Symbol updated 1299863 APPROVED
2005-09-30 LOC56769        Symbol and Name status set to provisional 70820 PROVISIONAL