Ssx2ip (SSX family member 2 interacting protein)

Gene: Ssx2ip (SSX family member 2 interacting protein) Rattus norvegicus

Analyze

Symbol:

Ssx2ip

Name:

SSX family member 2 interacting protein

RGD ID:

708490

Description:

Enables protein domain specific binding activity. Predicted to be involved in centrosome cycle and intraciliary transport involved in cilium assembly. Predicted to act upstream of or within regulation of Rac protein signal transduction and regulation of cell motility. Located in adherens junction. Orthologous to human SSX2IP (SSX family member 2 interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ADIP; afadin DIL domain-interacting protein; afadin- and alpha-actinin-binding protein; afadin- and alpha-actinin-binding protein ADIP; afadin- and alpha-actinin-binding protein-like; LOC100909794; LOC308023; synovial sarcoma, X breakpoint 2 interacting protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	237,958,286 - 237,991,026 (+)	NCBI		GRCr8
mRatBN7.2	2	235,298,012 - 235,330,750 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	235,298,088 - 235,330,745 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	243,093,833 - 243,125,471 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	240,985,256 - 241,016,885 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	235,851,459 - 235,883,105 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	252,263,323 - 252,296,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	252,263,386 - 252,296,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	2	254,022,079 - 254,039,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	244,604,360 - 244,637,562 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	244,602,012 - 244,625,262 (+)	NCBI
Celera	2	227,278,018 - 227,309,495 (+)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

amitrole (EXP)

ammonium chloride (EXP)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

buspirone (EXP)

butanal (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

clofibrate (EXP)

clofibric acid (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (EXP)

gentamycin (EXP)

glafenine (EXP)

L-ethionine (EXP)

levofloxacin (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nickel subsulfide (EXP)

nimesulide (EXP)

omeprazole (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

piroxicam (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

trovafloxacin (EXP)

uranium atom (ISO)

valproic acid (ISO)

vitamin E (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (NAS)

cell adhesion (IEA)

centrosome cycle (IEA,ISO,ISS)

cilium assembly (ISO,ISS)

intraciliary transport involved in cilium assembly (IBA,IEA,ISO,ISS)

regulation of cell motility (IEA,ISO)

regulation of Rac protein signal transduction (IEA,ISO)

Cellular Component

adherens junction (IDA,IEA)

cell leading edge (IEA,ISO)

centriolar satellite (IBA,IEA,ISO,ISS)

ciliary basal body (IBA,IEA,ISO,ISS)

cytoplasm (IEA)

nucleus (IEA)

protein-containing complex (IEA,ISO)

Molecular Function

protein binding (ISO)

protein domain specific binding (IPI)

protein-macromolecule adaptor activity (NAS)

References

References - curated

#	Reference Title	Reference Citation
1.	ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions.	Asada M, etal., J Biol Chem 2003 Feb 7;278(6):4103-11.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15358183	PMID:15489334	PMID:22027834	PMID:23816619	PMID:24356449	PMID:25712270

Genomics

Comparative Map Data

Ssx2ip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	237,958,286 - 237,991,026 (+)	NCBI		GRCr8
mRatBN7.2	2	235,298,012 - 235,330,750 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	235,298,088 - 235,330,745 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	243,093,833 - 243,125,471 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	240,985,256 - 241,016,885 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	235,851,459 - 235,883,105 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	252,263,323 - 252,296,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	252,263,386 - 252,296,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	2	254,022,079 - 254,039,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	244,604,360 - 244,637,562 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	244,602,012 - 244,625,262 (+)	NCBI
Celera	2	227,278,018 - 227,309,495 (+)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

SSX2IP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	84,643,706 - 84,690,745 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	84,643,706 - 84,690,803 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	85,109,389 - 85,156,144 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	84,882,184 - 84,928,768 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	84,821,619 - 84,868,201	NCBI
Celera	1	83,353,285 - 83,400,131 (-)	NCBI		Celera
Cytogenetic Map	1	p22.3	NCBI
HuRef	1	83,219,452 - 83,266,227 (-)	NCBI		HuRef
CHM1_1	1	85,224,238 - 85,271,092 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	84,484,101 - 84,537,018 (-)	NCBI		T2T-CHM13v2.0

Ssx2ip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	146,110,397 - 146,145,899 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	146,110,397 - 146,145,899 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	146,404,642 - 146,440,144 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	146,404,642 - 146,440,144 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	146,067,651 - 146,103,103 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	146,342,073 - 146,377,525 (+)	NCBI		MGSCv36	mm8
Celera	3	152,854,408 - 152,890,141 (+)	NCBI		Celera
Cytogenetic Map	3	H2	NCBI
cM Map	3	71.03	NCBI

Ssx2ip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	9,249,528 - 9,296,293 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	9,249,528 - 9,296,293 (+)	NCBI	ChiLan1.0	ChiLan1.0

SSX2IP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	142,246,220 - 142,297,658 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	141,400,735 - 141,452,171 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	117,192,699 - 117,239,423 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	86,052,733 - 86,105,769 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	86,052,733 - 86,105,769 (-)	Ensembl	panpan1.1		panPan2

SSX2IP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	63,147,111 - 63,266,481 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	63,225,570 - 63,265,942 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	65,793,954 - 65,913,339 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	63,683,796 - 63,803,199 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	63,762,064 - 63,803,194 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	63,291,887 - 63,332,685 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	63,181,623 - 63,300,955 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	63,689,693 - 63,808,850 (+)	NCBI		UU_Cfam_GSD_1.0

Ssx2ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	95,307,829 - 95,347,072 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936608	958,954 - 1,000,096 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936608	958,991 - 995,821 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSX2IP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	129,055,523 - 129,114,217 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	129,049,186 - 129,113,622 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	119,534,526 - 119,566,631 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSX2IP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	48,660,888 - 48,708,843 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	48,661,234 - 48,705,867 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	69,056,696 - 69,105,446 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssx2ip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	12,822,716 - 12,864,508 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	12,822,693 - 12,862,831 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ssx2ip
125 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	42
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000041186
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	202446871	237938339	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	215377404	237938339	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	218414747	240841241	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat

Markers in Region

D2Rat68

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	235,328,134 - 235,328,311 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	252,293,434 - 252,293,610	NCBI	Rnor6.0
Rnor_5.0	2	270,820,398 - 270,820,574	UniSTS	Rnor5.0
RGSC_v3.4	2	244,635,818 - 244,636,232	RGD	RGSC3.4
RGSC_v3.4	2	244,635,925 - 244,636,101	UniSTS	RGSC3.4
RGSC_v3.1	2	244,622,665 - 244,622,841	RGD
Celera	2	227,307,858 - 227,308,034	UniSTS
RH 3.4 Map	2	1581.1	RGD
RH 3.4 Map	2	1581.1	UniSTS
SHRSP x BN Map	2	103.3098	UniSTS
SHRSP x BN Map	2	103.3098	RGD
FHH x ACI Map	2	112.8599	RGD
Cytogenetic Map	2	q44	UniSTS

AW535259

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	235,326,426 - 235,326,590 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	252,291,726 - 252,291,889	NCBI	Rnor6.0
Rnor_5.0	2	270,818,690 - 270,818,853	UniSTS	Rnor5.0
RGSC_v3.4	2	244,634,217 - 244,634,380	UniSTS	RGSC3.4
Celera	2	227,306,150 - 227,306,313	UniSTS
Cytogenetic Map	2	q44	UniSTS

RH141631

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	235,330,075 - 235,330,286 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	252,295,375 - 252,295,585	NCBI	Rnor6.0
Rnor_5.0	2	270,822,339 - 270,822,549	UniSTS	Rnor5.0
RGSC_v3.4	2	244,637,866 - 244,638,076	UniSTS	RGSC3.4
Celera	2	227,309,799 - 227,310,009	UniSTS
RH 3.4 Map	2	1581.0	UniSTS
Cytogenetic Map	2	q44	UniSTS

BE119111

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	235,329,540 - 235,329,720 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	252,294,840 - 252,295,019	NCBI	Rnor6.0
Rnor_5.0	2	270,821,804 - 270,821,983	UniSTS	Rnor5.0
RGSC_v3.4	2	244,637,331 - 244,637,510	UniSTS	RGSC3.4
Celera	2	227,309,264 - 227,309,443	UniSTS
RH 3.4 Map	2	1536.1	UniSTS
Cytogenetic Map	2	q44	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		18	38	30	12	30			74	22	37	4
Low	3	25	19	11	7	11	8	11		13	4	7	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC142185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF532970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000041186 ⟹ ENSRNOP00000043877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	235,298,189 - 235,329,771 (+)	Ensembl
Rnor_6.0 Ensembl	2	252,263,487 - 252,296,031 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	254,022,079 - 254,039,326 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084034 ⟹ ENSRNOP00000072590

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	235,309,088 - 235,330,745 (+)	Ensembl
Rnor_6.0 Ensembl	2	252,263,485 - 252,296,051 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	254,033,197 - 254,039,326 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092913 ⟹ ENSRNOP00000075933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	235,298,088 - 235,309,858 (+)	Ensembl
Rnor_6.0 Ensembl	2	252,263,386 - 252,275,159 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092931 ⟹ ENSRNOP00000075993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	252,263,556 - 252,281,378 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	252,276,582 - 252,286,916 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	252,293,154 - 252,294,932 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	252,292,078 - 252,294,871 (+)	Ensembl

RefSeq Acc Id:

NM_175597 ⟹ NP_783187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,464 - 237,990,048 (+)	NCBI
mRatBN7.2	2	235,298,189 - 235,329,772 (+)	NCBI
Rnor_6.0	2	252,263,487 - 252,295,071 (+)	NCBI
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI
RGSC_v3.4	2	244,604,360 - 244,637,562 (+)	RGD
Celera	2	227,278,018 - 227,309,495 (+)	RGD

Sequence:

show sequence

CGGGCTGGACGTGGGCGCATGCACCCGGGCCGGCACTGGGCGGGCTCGTCGCGGCCGTTGCAGC
GGTTGGAGAGCGTTGCTGCCAGCCGCCTGCAGCGGGAAGTGTGAGCTGTACAGGGAAGATAATA
GGCCCAGGGATTAAGTAACCAGGCTGAAGCAGCTTGGAGATAACTGCAGAAGCTGGGTCACTCC
AGGATGAAACGTGAAGCTTACTCCATGACACATTGAGCCTTGTGACAAGACCTGTTAAGTCCAT
AGCATCCTCGACTTGCTCAGGAGATGCTCACGTAGGAGAGTGACAGGAGCTGTTGTGCATGCCC
CAGCACTGAACTGCCTTCTCAGGGACCCTGGCTCTGGGACTGGCTATGGGAGATTGGATGACTG
TTACAGATCCAGTTCTGTGTACAGAAAACAAAAATCTCTCTCAATATACCTCAGAAACAAAGAT
GTCTCCGTCAAGTTTATACTCGCAGCAAGTACTGTGCTCTGCAACACCTTTATCCAAGAATGTG
CATGGTGTTTTCAGTGCCTTCTGCACAGGAGAGAACATCGAACAGAGTATTTCGTATCTTGATC
AGGAACTGACTACCTTCGGTTTCCCTTCCTTGTATGAAGAATCCAAAAGTAAGGAGGCGAAGCG
AGAGTTAAGTATAGTTGCTCTTCTGAACTGCATGAATGAGCTGCTTGTGCTTCAGCGGAAGAAC
CTCCTGGCCCAAGAAAGCGTGGAGACACAGAATCTGAAGCTGGGCAGTGACATGGACCACCTGC
AGAGCTGCTACGCCAAACTTAAGGAACAGTTGGAGGCCTCCAGGCGAGAGATGATCAGCCTTCA
GGAGAGAGACAGACAGCTACAGTGCAAAAACAGGAATTTGCATCAGCTCCTGAAAAACGAGAAA
GAAGAGGTACAAAAATTACAAAATATCATAGCCAGTCGGGCTACTCAGTATAATCATGATGTGA
AGAGAAAGGAGCGGGAGTACAATAAACTGAAGGAGCGTCTGCATCAGCTTGTTATGAACAAGAA
GGATAAAAATATAGCCATGGACGTTTTAAATTACGTGGGCCGAGTGGATGGAAAGCGAGGCTCC
TGGAGGACTGATAAAACAGAAGCCAGGAATGAAGATGAAATGTACAAAATTCTGCTGAATGATT
ATGAGTACCGCCAGAAGCAGATCCTGCTGGAGAATGCGGAGCTGAAGAAGGTCCTCCAGCAGAT
GAAGAAAGAGATGATCTCTCTCCTTTCTCCTCAAAAGAAGAAACCCAGAGAAAGAGCAGAGGAC
AGCACAGGCACTGTTGTCATCTCCGATGTAGAAGACGACGCTGGGGAGCTGAGCAGAGATGGTG
TGTGGAGCCTTTCCTGTGACACTGTCAGGGAGCAGCTTACAAACAGCATCAGGAAGCAGTGGAG
AATTCTGAAAAGCCATGTGGAAAAACTTGATAACCAAGCTTCAAAGGTACACTCAGAGGGCTTT
CATGAAGAGGACGTCATCTCACGACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGA
TTGAGCGGTGTAAAGAGATGATCAAGGCTCAGCAGCAGCTCTTACAGCAACAGCTGGCCACTGC
GTGTGATGACGACACCACCTCACTGTTGCGAGACTGTTACTTGCTTGAAGAAAAGGAACGCCTT
AAAGAAGAGTGGTCCCTTTTTAAAGAGCAAAAAAAGAATTTTGAGAGAGAAAGACGAAGCTTTA
CAGAAGCTGCTATTCGCTTGGGGTTGGAGAGAAAGGCGTTTGAGGAAGAGCGAGCCAGCTGGGT
GAAGCAGCAGTTTTTAAACATGACGACCTTTGATCACCAGAACTCAGAAAATGTGAAACTTTTC
AGTGCCTTTTCAGGAAGTTCTGATCCAGACAATCTTATAGTCCACCCACGGCCACGGCAAAAGA
AGCCACACAGTGTCGCTAATGGGGTACCAGCTTGCACATCCAAACTGGCTAAGTCTCTTCCGAC
CTCACCTTCAGACTTCTGCCCGTCTCGCTCATGTGTGTCTGAGCACAGTCCCGTCAGTGCGCTG
ACTGTGACTCCTGAAGAAACCAAACCGAATGAGGTTGGAAGAGAAAGTACGGACCAGAAGTGGA
GCGTGGTGTCCAGACCCAGCTCCCGGGAGGGTTGCTACGGTGGATGCTCCTCGGCCTACACAAG
CTCCCACGTGGAACGAGATGACTTACCATAGGTGCTCGGGCTGCAGCGCTGTCCTGGAGTGCAT
GAGAGGAATTGACACGGGGTGTAGCATAAAGTCAGCCATCTACCTTAAGATGTCGGAGTTGTTT
GTTTGGACTTCCCAGTCTTTCCCCAAAGAGCTGAAACGCTTTAGAGGATGCGAAAGCTTTGGCT
GTGTGTTAGTAACAGAAGCCTCTGGCTCTGTGAGTAAAGGAATGTATGGTGTTTGGTGGGAAAC
AAAAGCACGAGAATGATTTCCTCTTCCGGGTACTGAGAATAGCACTTTTAGGGACTGATTCTTG
TAAACATTAAATTTTTGTCCCAAGTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233454 ⟹ XP_006233516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,286 - 237,991,026 (+)	NCBI
mRatBN7.2	2	235,298,012 - 235,330,750 (+)	NCBI
Rnor_6.0	2	252,263,323 - 252,296,049 (+)	NCBI
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI

Sequence:

show sequence

GGAAAGCGGCGAGAGGCGGGCCGGGCGGACCCGGCGGGCTGGAGGCTGCGCGGAACCGCTGCGT
GCCGCCGCGGGTGCGGGCCCGCGGGCTACGGGAGGCGTGAGCCGCTCCCGGTGCCGTGACGGAG
ATGCTCACGTAGGAGAGTGACAGGAGCTGTTGTGCATGCCCCAGCACTGAACTGCCTTCTCAGG
GACCCTGGCTCTGGGACTGGCTATGGGAGATTGGATGACTGTTACAGATCCAGTTCTGTGTACA
GAAAACAAAAATCTCTCTCAATATACCTCAGAAACAAAGATGTCTCCGTCAAGTTTATACTCGC
AGCAAGTACTGTGCTCTGCAACACCTTTATCCAAGAATGTGCATGGTGTTTTCAGTGCCTTCTG
CACAGGAGAGAACATCGAACAGAGTATTTCGTATCTTGATCAGGAACTGACTACCTTCGGTTTC
CCTTCCTTGTATGAAGAATCCAAAAGTAAGGAGGCGAAGCGAGAGTTAAGTATAGTTGCTCTTC
TGAACTGCATGAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTCCTGGCCCAAGAAAGCGTGGA
GACACAGAATCTGAAGCTGGGCAGTGACATGGACCACCTGCAGAGCTGCTACGCCAAACTTAAG
GAACAGTTGGAGGCCTCCAGGCGAGAGATGATCAGCCTTCAGGAGAGAGACAGACAGCTACAGT
GCAAAAACAGGAATTTGCATCAGCTCCTGAAAAACGAGAAAGAAGAGGTACAAAAATTACAAAA
TATCATAGCCAGTCGGGCTACTCAGTATAATCATGATGTGAAGAGAAAGGAGCGGGAGTACAAT
AAACTGAAGGAGCGTCTGCATCAGCTTGTTATGAACAAGAAGGATAAAAATATAGCCATGGACG
TTTTAAATTACGTGGGCCGAGTGGATGGAAAGCGAGGCTCCTGGAGGACTGATAAAACAGAAGC
CAGGAATGAAGATGAAATGTACAAAATTCTGCTGAATGATTATGAGTACCGCCAGAAGCAGATC
CTGCTGGAGAATGCGGAGCTGAAGAAGGTCCTCCAGCAGATGAAGAAAGAGATGATCTCTCTCC
TTTCTCCTCAAAAGAAGAAACCCAGAGAAAGAGCAGAGGACAGCACAGGCACTGTTGTCATCTC
CGATGTAGAAGACGACGCTGGGGAGCTGAGCAGAGATGGTGTGTGGAGCCTTTCCTGTGACACT
GTCAGGGAGCAGCTTACAAACAGCATCAGGAAGCAGTGGAGAATTCTGAAAAGCCATGTGGAAA
AACTTGATAACCAAGCTTCAAAGGTACACTCAGAGGGCTTTCATGAAGAGGACGTCATCTCACG
ACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTGAGCGGTGTAAAGAGATGATC
AAGGCTCAGCAGCAGCTCTTACAGCAACAGCTGGCCACTGCGTGTGATGACGACACCACCTCAC
TGTTGCGAGACTGTTACTTGCTTGAAGAAAAGGAACGCCTTAAAGAAGAGTGGTCCCTTTTTAA
AGAGCAAAAAAAGAATTTTGAGAGAGAAAGACGAAGCTTTACAGAAGCTGCTATTCGCTTGGGG
TTGGAGAGAAAGGCGTTTGAGGAAGAGCGAGCCAGCTGGGTGAAGCAGCAGTTTTTAAACATGA
CGACCTTTGATCACCAGAACTCAGAAAATGTGAAACTTTTCAGTGCCTTTTCAGGAAGTTCTGA
TCCAGACAATCTTATAGTCCACCCACGGCCACGGCAAAAGAAGCCACACAGTGTCGCTAATGGG
GTACCAGCTTGCACATCCAAACTGGCTAAGTCTCTTCCGACCTCACCTTCAGACTTCTGCCCGT
CTCGCTCATGTGTGTCTGAGCACAGTCCCGTCAGTGCGCTGACTGTGACTCCTGAAGAAACCAA
ACCGAATGAGGTTGGAAGAGAAAGTACGGACCAGAAGTGGAGCGTGGTGTCCAGACCCAGCTCC
CGGGAGGGTTGCTACGGTGGATGCTCCTCGGCCTACACAAGCTCCCACGTGGAACGAGATGACT
TACCATAGGTGCTCGGGCTGCAGCGCTGTCCTGGAGTGCATGAGAGGAATTGACACGGGGTGTA
GCATAAAGTCAGCCATCTACCTTAAGATGTCGGAGTTGTTTGTTTGGACTTCCCAGTCTTTCCC
CAAAGAGCTGAAACGCTTTAGAGGATGCGAAAGCTTTGGCTGTGTGTTAGTAACAGAAGCCTCT
GGCTCTGTGAGTAAAGGAATGTATGGTGTTTGGTGGGAAACAAAAGCACGAGAATGATTTCCTC
TTCCGGGTACTGAGAATAGCACTTTTAGGGACTGATTCTTGTAAACATTAAATTTTTGTCCCAA
GTATGGTTGGCATTGGAAGTTTAGTCTTTACTTGAATGTACACTGTAGATTTTTAACAAAGCAG
TTCTATATTTATTATGTTTAGTGTGATTTTGGGATTACCTCTTTCATATGTTTTCTGCCTGTAC
ATAAATATACATGACTATGTTAAGAGGCTTTAAGGTTTAAAAATTTCACACCATGCTCGAGTAT
AGCATTTCATGCCAATTAAAATGTTTTCAGTGGCATGGTGTTTACAGATGTGTTAGGACCACTG
CCACATGACAGTTAAGATTTTATTTTTAAGCCATTTGGGCAATAAAAATTCAAAGCCACTTCAT
AAGCTAAGTTCAGATAGCTAAAACTACTAACATTACATTTTTGAGATTTATAAAGCATTATATT
TTATTTTATATATGTGACTGTTATAATTTCTAAGAGGAATGTGGATTATGAAGCAATGGGGGAA
AGACAGAAGTGACTAATAGTGCAAGAGCATTGGGTGAAGGGACGGCTGATGAGGATATGGGAGA
CCTGGGTGGTGATCTTTTCCTTACCGACGGTGCGGTGCGGCGATCTCTGTACCGCCAGGGCTTT
CTATCATTGCCAATACTTTTGTAATTAAAGAGATTTTCAACTACATACCACTACTAAAGTAAGA
CAGTGTAAAACTTTGGCTTTTGTAATTGACACTCTGGACACTGGTGTGTTGTTCATTTCTAGAA
CAATCGTAGGCTCTTTTCTCTGTTTCTGCTGCATGTTTCTTCATGAGAAGTATGTTACTATTGA
CAGTAATGACACTGACAGTGACTGTAGACGTAGGCCCAGACTTCTCCTGGGTGGATTTTCATCC
AGCAGCTTTTAAGTGCCTCGCCCTGCTCGTCTCTGCACATAGCCGCCGACACAAGCCCTCGCTT
GATGATGCAGATAGTCCATCTGCCTTTCTCTCCCCTTGCCCTGCTATGACTGTTGCATTAAATT
CATCATGCTGCCAAAAGACAA

hide sequence

RefSeq Acc Id:

XM_006233455 ⟹ XP_006233517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,434 - 237,991,026 (+)	NCBI
mRatBN7.2	2	235,298,164 - 235,330,750 (+)	NCBI
Rnor_6.0	2	252,263,323 - 252,296,049 (+)	NCBI
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI

Sequence:

show sequence

GGAAAGCGGCGAGAGGCGGGCCGGGCGGACCCGGCGGGCTGGAGGCTGCGCGGAACCGCTGCGT
GCCGCCGCGGGTGCGGGCCCGCGGGCTACGGGAGGCGTGAGCCGCTCCCGGTGCCGTGACGGTG
AGCGGCGGGATTGTGACGCGCAGCCGGGGAGGGCGCCGGGCTGGACGTGGGCGCATGCACCCGG
GCCGGCACTGGGCGGGCTCGTCGCGGCCGTTGCAGCGGTTGGAGAGCGTTGCTGCCAGCCGCCT
GCAGCGGGAAGTGTGAGGAGATGCTCACGTAGGAGAGTGACAGGAGCTGTTGTGCATGCCCCAG
CACTGAACTGCCTTCTCAGGGACCCTGGCTCTGGGACTGGCTATGGGAGATTGGATGACTGTTA
CAGATCCAGTTCTGTGTACAGAAAACAAAAATCTCTCTCAATATACCTCAGAAACAAAGATGTC
TCCGTCAAGTTTATACTCGCAGCAAGTACTGTGCTCTGCAACACCTTTATCCAAGAATGTGCAT
GGTGTTTTCAGTGCCTTCTGCACAGGAGAGAACATCGAACAGAGTATTTCGTATCTTGATCAGG
AACTGACTACCTTCGGTTTCCCTTCCTTGTATGAAGAATCCAAAAGTAAGGAGGCGAAGCGAGA
GTTAAGTATAGTTGCTCTTCTGAACTGCATGAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTC
CTGGCCCAAGAAAGCGTGGAGACACAGAATCTGAAGCTGGGCAGTGACATGGACCACCTGCAGA
GCTGCTACGCCAAACTTAAGGAACAGTTGGAGGCCTCCAGGCGAGAGATGATCAGCCTTCAGGA
GAGAGACAGACAGCTACAGTGCAAAAACAGGAATTTGCATCAGCTCCTGAAAAACGAGAAAGAA
GAGGTACAAAAATTACAAAATATCATAGCCAGTCGGGCTACTCAGTATAATCATGATGTGAAGA
GAAAGGAGCGGGAGTACAATAAACTGAAGGAGCGTCTGCATCAGCTTGTTATGAACAAGAAGGA
TAAAAATATAGCCATGGACGTTTTAAATTACGTGGGCCGAGTGGATGGAAAGCGAGGCTCCTGG
AGGACTGATAAAACAGAAGCCAGGAATGAAGATGAAATGTACAAAATTCTGCTGAATGATTATG
AGTACCGCCAGAAGCAGATCCTGCTGGAGAATGCGGAGCTGAAGAAGGTCCTCCAGCAGATGAA
GAAAGAGATGATCTCTCTCCTTTCTCCTCAAAAGAAGAAACCCAGAGAAAGAGCAGAGGACAGC
ACAGGCACTGTTGTCATCTCCGATGTAGAAGACGACGCTGGGGAGCTGAGCAGAGATGGTGTGT
GGAGCCTTTCCTGTGACACTGTCAGGGAGCAGCTTACAAACAGCATCAGGAAGCAGTGGAGAAT
TCTGAAAAGCCATGTGGAAAAACTTGATAACCAAGCTTCAAAGGTACACTCAGAGGGCTTTCAT
GAAGAGGACGTCATCTCACGACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTG
AGCGGTGTAAAGAGATGATCAAGGCTCAGCAGCAGCTCTTACAGCAACAGCTGGCCACTGCGTG
TGATGACGACACCACCTCACTGTTGCGAGACTGTTACTTGCTTGAAGAAAAGGAACGCCTTAAA
GAAGAGTGGTCCCTTTTTAAAGAGCAAAAAAAGAATTTTGAGAGAGAAAGACGAAGCTTTACAG
AAGCTGCTATTCGCTTGGGGTTGGAGAGAAAGGCGTTTGAGGAAGAGCGAGCCAGCTGGGTGAA
GCAGCAGTTTTTAAACATGACGACCTTTGATCACCAGAACTCAGAAAATGTGAAACTTTTCAGT
GCCTTTTCAGGAAGTTCTGATCCAGACAATCTTATAGTCCACCCACGGCCACGGCAAAAGAAGC
CACACAGTGTCGCTAATGGGGTACCAGCTTGCACATCCAAACTGGCTAAGTCTCTTCCGACCTC
ACCTTCAGACTTCTGCCCGTCTCGCTCATGTGTGTCTGAGCACAGTCCCGTCAGTGCGCTGACT
GTGACTCCTGAAGAAACCAAACCGAATGAGGTTGGAAGAGAAAGTACGGACCAGAAGTGGAGCG
TGGTGTCCAGACCCAGCTCCCGGGAGGGTTGCTACGGTGGATGCTCCTCGGCCTACACAAGCTC
CCACGTGGAACGAGATGACTTACCATAGGTGCTCGGGCTGCAGCGCTGTCCTGGAGTGCATGAG
AGGAATTGACACGGGGTGTAGCATAAAGTCAGCCATCTACCTTAAGATGTCGGAGTTGTTTGTT
TGGACTTCCCAGTCTTTCCCCAAAGAGCTGAAACGCTTTAGAGGATGCGAAAGCTTTGGCTGTG
TGTTAGTAACAGAAGCCTCTGGCTCTGTGAGTAAAGGAATGTATGGTGTTTGGTGGGAAACAAA
AGCACGAGAATGATTTCCTCTTCCGGGTACTGAGAATAGCACTTTTAGGGACTGATTCTTGTAA
ACATTAAATTTTTGTCCCAAGTATGGTTGGCATTGGAAGTTTAGTCTTTACTTGAATGTACACT
GTAGATTTTTAACAAAGCAGTTCTATATTTATTATGTTTAGTGTGATTTTGGGATTACCTCTTT
CATATGTTTTCTGCCTGTACATAAATATACATGACTATGTTAAGAGGCTTTAAGGTTTAAAAAT
TTCACACCATGCTCGAGTATAGCATTTCATGCCAATTAAAATGTTTTCAGTGGCATGGTGTTTA
CAGATGTGTTAGGACCACTGCCACATGACAGTTAAGATTTTATTTTTAAGCCATTTGGGCAATA
AAAATTCAAAGCCACTTCATAAGCTAAGTTCAGATAGCTAAAACTACTAACATTACATTTTTGA
GATTTATAAAGCATTATATTTTATTTTATATATGTGACTGTTATAATTTCTAAGAGGAATGTGG
ATTATGAAGCAATGGGGGAAAGACAGAAGTGACTAATAGTGCAAGAGCATTGGGTGAAGGGACG
GCTGATGAGGATATGGGAGACCTGGGTGGTGATCTTTTCCTTACCGACGGTGCGGTGCGGCGAT
CTCTGTACCGCCAGGGCTTTCTATCATTGCCAATACTTTTGTAATTAAAGAGATTTTCAACTAC
ATACCACTACTAAAGTAAGACAGTGTAAAACTTTGGCTTTTGTAATTGACACTCTGGACACTGG
TGTGTTGTTCATTTCTAGAACAATCGTAGGCTCTTTTCTCTGTTTCTGCTGCATGTTTCTTCAT
GAGAAGTATGTTACTATTGACAGTAATGACACTGACAGTGACTGTAGACGTAGGCCCAGACTTC
TCCTGGGTGGATTTTCATCCAGCAGCTTTTAAGTGCCTCGCCCTGCTCGTCTCTGCACATAGCC
GCCGACACAAGCCCTCGCTTGATGATGCAGATAGTCCATCTGCCTTTCTCTCCCCTTGCCCTGC
TATGACTGTTGCATTAAATTCATCATGCTGCCAAAAGACAA

hide sequence

RefSeq Acc Id:

XM_006233458 ⟹ XP_006233520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,971,330 - 237,991,026 (+)	NCBI
mRatBN7.2	2	235,311,064 - 235,330,750 (+)	NCBI
Rnor_6.0	2	252,275,999 - 252,296,049 (+)	NCBI
Rnor_5.0	2	270,790,310 - 270,823,013 (+)	NCBI

Sequence:

show sequence

CGGTCATCCTCCTGCCTCAGTGCCCTGCCACAGGAGGCCATGGGCTTCAGATTCGATTCAGGAC
TGTGTTTAAAACCTGAGGTTCTTTTGCATATAGGAAGATGATTTCCAGAAATGTGTACACAGTT
GTTACTCTGCTTCTCGCTGTCTGTGCTGAAGGCCTTGATTTTACTGTGGAGAGGCTCTGCTGAG
TCTGTAGAAAGTTAGGAAATACTTACCTTCTGGGGGAAGTGAGGATTCTCTCACCTGATCCAGC
CGTACTGATAAAGGACAGCTTCATAACACATGGATGCCAAGAAAAAATATGCCCATGATCCTAT
GGTACATACCCATGATCCTACGGTACATACCCATGATCCTACGGTACATACCCATGATCCTAGG
GTACATACCCATGATCCTACGGTACATACCCATGATCCTACAGTACATACCCATGTTCCTACGG
TACATACCCATGATCCTACGGTACATACCCATGATCCTACGGTACATTCCCATGTTCCTAGGGT
ACATTCCCATGTTCCTAGGGTACATACAACAAAGAATGGGATTGGGGGAATGAGCCAGACAGCG
TCTGACCCTAAGGATGTCCAGCACTGCAGGGGAGACTGTAGTCTTCTGTGGCCACTGGAACAGT
TGGAGGCCTCCAGGCGAGAGATGATCAGCCTTCAGGAGAGAGACAGACAGCTACAGTGCAAAAA
CAGGAATTTGCATCAGCTCCTGAAAAACGAGAAAGAAGAGGTACAAAAATTACAAAATATCATA
GCCAGTCGGGCTACTCAGTATAATCATGATGTGAAGAGAAAGGAGCGGGAGTACAATAAACTGA
AGGAGCGTCTGCATCAGCTTGTTATGAACAAGAAGGATAAAAATATAGCCATGGACGTTTTAAA
TTACGTGGGCCGAGTGGATGGAAAGCGAGGCTCCTGGAGGACTGATAAAACAGAAGCCAGGAAT
GAAGATGAAATGTACAAAATTCTGCTGAATGATTATGAGTACCGCCAGAAGCAGATCCTGCTGG
AGAATGCGGAGCTGAAGAAGGTCCTCCAGCAGATGAAGAAAGAGATGATCTCTCTCCTTTCTCC
TCAAAAGAAGAAACCCAGAGAAAGAGCAGAGGACAGCACAGGCACTGTTGTCATCTCCGATGTA
GAAGACGACGCTGGGGAGCTGAGCAGAGATGGTGTGTGGAGCCTTTCCTGTGACACTGTCAGGG
AGCAGCTTACAAACAGCATCAGGAAGCAGTGGAGAATTCTGAAAAGCCATGTGGAAAAACTTGA
TAACCAAGCTTCAAAGGTACACTCAGAGGGCTTTCATGAAGAGGACGTCATCTCACGACAAGAC
CATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTGAGCGGTGTAAAGAGATGATCAAGGCTC
AGCAGCAGCTCTTACAGCAACAGCTGGCCACTGCGTGTGATGACGACACCACCTCACTGTTGCG
AGACTGTTACTTGCTTGAAGAAAAGGAACGCCTTAAAGAAGAGTGGTCCCTTTTTAAAGAGCAA
AAAAAGAATTTTGAGAGAGAAAGACGAAGCTTTACAGAAGCTGCTATTCGCTTGGGGTTGGAGA
GAAAGGCGTTTGAGGAAGAGCGAGCCAGCTGGGTGAAGCAGCAGTTTTTAAACATGACGACCTT
TGATCACCAGAACTCAGAAAATGTGAAACTTTTCAGTGCCTTTTCAGGAAGTTCTGATCCAGAC
AATCTTATAGTCCACCCACGGCCACGGCAAAAGAAGCCACACAGTGTCGCTAATGGGGTACCAG
CTTGCACATCCAAACTGGCTAAGTCTCTTCCGACCTCACCTTCAGACTTCTGCCCGTCTCGCTC
ATGTGTGTCTGAGCACAGTCCCGTCAGTGCGCTGACTGTGACTCCTGAAGAAACCAAACCGAAT
GAGGTTGGAAGAGAAAGTACGGACCAGAAGTGGAGCGTGGTGTCCAGACCCAGCTCCCGGGAGG
GTTGCTACGGTGGATGCTCCTCGGCCTACACAAGCTCCCACGTGGAACGAGATGACTTACCATA
GGTGCTCGGGCTGCAGCGCTGTCCTGGAGTGCATGAGAGGAATTGACACGGGGTGTAGCATAAA
GTCAGCCATCTACCTTAAGATGTCGGAGTTGTTTGTTTGGACTTCCCAGTCTTTCCCCAAAGAG
CTGAAACGCTTTAGAGGATGCGAAAGCTTTGGCTGTGTGTTAGTAACAGAAGCCTCTGGCTCTG
TGAGTAAAGGAATGTATGGTGTTTGGTGGGAAACAAAAGCACGAGAATGATTTCCTCTTCCGGG
TACTGAGAATAGCACTTTTAGGGACTGATTCTTGTAAACATTAAATTTTTGTCCCAAGTATGGT
TGGCATTGGAAGTTTAGTCTTTACTTGAATGTACACTGTAGATTTTTAACAAAGCAGTTCTATA
TTTATTATGTTTAGTGTGATTTTGGGATTACCTCTTTCATATGTTTTCTGCCTGTACATAAATA
TACATGACTATGTTAAGAGGCTTTAAGGTTTAAAAATTTCACACCATGCTCGAGTATAGCATTT
CATGCCAATTAAAATGTTTTCAGTGGCATGGTGTTTACAGATGTGTTAGGACCACTGCCACATG
ACAGTTAAGATTTTATTTTTAAGCCATTTGGGCAATAAAAATTCAAAGCCACTTCATAAGCTAA
GTTCAGATAGCTAAAACTACTAACATTACATTTTTGAGATTTATAAAGCATTATATTTTATTTT
ATATATGTGACTGTTATAATTTCTAAGAGGAATGTGGATTATGAAGCAATGGGGGAAAGACAGA
AGTGACTAATAGTGCAAGAGCATTGGGTGAAGGGACGGCTGATGAGGATATGGGAGACCTGGGT
GGTGATCTTTTCCTTACCGACGGTGCGGTGCGGCGATCTCTGTACCGCCAGGGCTTTCTATCAT
TGCCAATACTTTTGTAATTAAAGAGATTTTCAACTACATACCACTACTAAAGTAAGACAGTGTA
AAACTTTGGCTTTTGTAATTGACACTCTGGACACTGGTGTGTTGTTCATTTCTAGAACAATCGT
AGGCTCTTTTCTCTGTTTCTGCTGCATGTTTCTTCATGAGAAGTATGTTACTATTGACAGTAAT
GACACTGACAGTGACTGTAGACGTAGGCCCAGACTTCTCCTGGGTGGATTTTCATCCAGCAGCT
TTTAAGTGCCTCGCCCTGCTCGTCTCTGCACATAGCCGCCGACACAAGCCCTCGCTTGATGATG
CAGATAGTCCATCTGCCTTTCTCTCCCCTTGCCCTGCTATGACTGTTGCATTAAATTCATCATG
CTGCCAAAAGACAA

hide sequence

RefSeq Acc Id:

XM_039102140 ⟹ XP_038958068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,524 - 237,991,026 (+)	NCBI
mRatBN7.2	2	235,298,414 - 235,330,750 (+)	NCBI

RefSeq Acc Id:

XM_039102141 ⟹ XP_038958069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,593 - 237,991,026 (+)	NCBI
mRatBN7.2	2	235,298,406 - 235,330,750 (+)	NCBI

RefSeq Acc Id:

XM_063281685 ⟹ XP_063137755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,564 - 237,991,026 (+)	NCBI

RefSeq Acc Id:

XM_063281686 ⟹ XP_063137756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	237,958,591 - 237,991,026 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_783187	(Get FASTA)	NCBI Sequence Viewer
	XP_006233516	(Get FASTA)	NCBI Sequence Viewer
	XP_006233517	(Get FASTA)	NCBI Sequence Viewer
	XP_006233520	(Get FASTA)	NCBI Sequence Viewer
	XP_038958068	(Get FASTA)	NCBI Sequence Viewer
	XP_038958069	(Get FASTA)	NCBI Sequence Viewer
	XP_063137755	(Get FASTA)	NCBI Sequence Viewer
	XP_063137756	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78687	(Get FASTA)	NCBI Sequence Viewer
	AAO15016	(Get FASTA)	NCBI Sequence Viewer
	EDL82420	(Get FASTA)	NCBI Sequence Viewer
	EDL82421	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043877
	ENSRNOP00000043877.3
	ENSRNOP00000072590
	ENSRNOP00000072590.2
	ENSRNOP00000075933.1
	ENSRNOP00055035207
	ENSRNOP00060000365
	ENSRNOP00065016154
GenBank Protein	Q8CGZ2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_783187 ⟸ NM_175597

- UniProtKB:

Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL), A6HWD5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSATPLSKNVHGVFSAFCTGENIEQ
SISYLDQELTTFGFPSLYEESKSKEAKRELSIVALLNCMNELLVLQRKNLLAQESVETQNLKLG
SDMDHLQSCYAKLKEQLEASRREMISLQERDRQLQCKNRNLHQLLKNEKEEVQKLQNIIASRAT
QYNHDVKRKEREYNKLKERLHQLVMNKKDKNIAMDVLNYVGRVDGKRGSWRTDKTEARNEDEMY
KILLNDYEYRQKQILLENAELKKVLQQMKKEMISLLSPQKKKPRERAEDSTGTVVISDVEDDAG
ELSRDGVWSLSCDTVREQLTNSIRKQWRILKSHVEKLDNQASKVHSEGFHEEDVISRQDHEQET
EKLELEIERCKEMIKAQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFE
RERRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTTFDHQNSENVKLFSAFSGSSDPDNLIVH
PRPRQKKPHSVANGVPACTSKLAKSLPTSPSDFCPSRSCVSEHSPVSALTVTPEETKPNEVGRE
STDQKWSVVSRPSSREGCYGGCSSAYTSSHVERDDLP

hide sequence

RefSeq Acc Id:	XP_006233517 ⟸ XM_006233455
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL), A6HWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSATPLSKNVHGVFSAFCTGENIEQ SISYLDQELTTFGFPSLYEESKSKEAKRELSIVALLNCMNELLVLQRKNLLAQESVETQNLKLG SDMDHLQSCYAKLKEQLEASRREMISLQERDRQLQCKNRNLHQLLKNEKEEVQKLQNIIASRAT QYNHDVKRKEREYNKLKERLHQLVMNKKDKNIAMDVLNYVGRVDGKRGSWRTDKTEARNEDEMY KILLNDYEYRQKQILLENAELKKVLQQMKKEMISLLSPQKKKPRERAEDSTGTVVISDVEDDAG ELSRDGVWSLSCDTVREQLTNSIRKQWRILKSHVEKLDNQASKVHSEGFHEEDVISRQDHEQET EKLELEIERCKEMIKAQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFE RERRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTTFDHQNSENVKLFSAFSGSSDPDNLIVH PRPRQKKPHSVANGVPACTSKLAKSLPTSPSDFCPSRSCVSEHSPVSALTVTPEETKPNEVGRE STDQKWSVVSRPSSREGCYGGCSSAYTSSHVERDDLP hide sequence

RefSeq Acc Id:	XP_006233516 ⟸ XM_006233454
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL), A6HWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSATPLSKNVHGVFSAFCTGENIEQ SISYLDQELTTFGFPSLYEESKSKEAKRELSIVALLNCMNELLVLQRKNLLAQESVETQNLKLG SDMDHLQSCYAKLKEQLEASRREMISLQERDRQLQCKNRNLHQLLKNEKEEVQKLQNIIASRAT QYNHDVKRKEREYNKLKERLHQLVMNKKDKNIAMDVLNYVGRVDGKRGSWRTDKTEARNEDEMY KILLNDYEYRQKQILLENAELKKVLQQMKKEMISLLSPQKKKPRERAEDSTGTVVISDVEDDAG ELSRDGVWSLSCDTVREQLTNSIRKQWRILKSHVEKLDNQASKVHSEGFHEEDVISRQDHEQET EKLELEIERCKEMIKAQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFE RERRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTTFDHQNSENVKLFSAFSGSSDPDNLIVH PRPRQKKPHSVANGVPACTSKLAKSLPTSPSDFCPSRSCVSEHSPVSALTVTPEETKPNEVGRE STDQKWSVVSRPSSREGCYGGCSSAYTSSHVERDDLP hide sequence

RefSeq Acc Id:	XP_006233520 ⟸ XM_006233458
- Peptide Label:	isoform X2
- UniProtKB:	A6HWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAKKKYAHDPMVHTHDPTVHTHDPTVHTHDPRVHTHDPTVHTHDPTVHTHVPTVHTHDPTVHT HDPTVHSHVPRVHSHVPRVHTTKNGIGGMSQTASDPKDVQHCRGDCSLLWPLEQLEASRREMIS LQERDRQLQCKNRNLHQLLKNEKEEVQKLQNIIASRATQYNHDVKRKEREYNKLKERLHQLVMN KKDKNIAMDVLNYVGRVDGKRGSWRTDKTEARNEDEMYKILLNDYEYRQKQILLENAELKKVLQ QMKKEMISLLSPQKKKPRERAEDSTGTVVISDVEDDAGELSRDGVWSLSCDTVREQLTNSIRKQ WRILKSHVEKLDNQASKVHSEGFHEEDVISRQDHEQETEKLELEIERCKEMIKAQQQLLQQQLA TACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERAS WVKQQFLNMTTFDHQNSENVKLFSAFSGSSDPDNLIVHPRPRQKKPHSVANGVPACTSKLAKSL PTSPSDFCPSRSCVSEHSPVSALTVTPEETKPNEVGRESTDQKWSVVSRPSSREGCYGGCSSAY TSSHVERDDLP hide sequence

RefSeq Acc Id:

ENSRNOP00000043877 ⟸ ENSRNOT00000041186

RefSeq Acc Id:

ENSRNOP00000075993 ⟸ ENSRNOT00000092931

RefSeq Acc Id:

ENSRNOP00000075933 ⟸ ENSRNOT00000092913

RefSeq Acc Id:

ENSRNOP00000072590 ⟸ ENSRNOT00000084034

RefSeq Acc Id:	XP_038958069 ⟸ XM_039102141
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL), A6HWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958068 ⟸ XM_039102140
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL), A6HWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137755 ⟸ XM_063281685
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137756 ⟸ XM_063281686
- Peptide Label:	isoform X1
- UniProtKB:	Q8CGZ2 (UniProtKB/Swiss-Prot), A6HWD4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CGZ2-F1-model_v2	AlphaFold	Q8CGZ2	1-613	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708490	AgrOrtholog
BioCyc Gene	G2FUF-50903	BioCyc
Ensembl Genes	ENSRNOG00000015425	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00000051456	Ensembl
	ENSRNOG00055025031	UniProtKB/Swiss-Prot
	ENSRNOG00060000856	UniProtKB/Swiss-Prot
	ENSRNOG00065012819	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000041186	ENTREZGENE
	ENSRNOT00000041186.6	UniProtKB/Swiss-Prot
	ENSRNOT00000084034.2	UniProtKB/TrEMBL
	ENSRNOT00000092913.2	UniProtKB/TrEMBL
	ENSRNOT00055043153	UniProtKB/Swiss-Prot
	ENSRNOT00060001060	UniProtKB/Swiss-Prot
	ENSRNOT00065020949	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7115887	IMAGE-MGC_LOAD
InterPro	Afadin/alpha-actinin-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:308023	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93056	IMAGE-MGC_LOAD
NCBI Gene	308023	ENTREZGENE
PANTHER	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	UniProtKB/Swiss-Prot
	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	UniProtKB/Swiss-Prot
	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	UniProtKB/TrEMBL
	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	ADIP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ssx2ip	PhenoGen
RatGTEx	ENSRNOG00000015425	RatGTEx
	ENSRNOG00000051456	RatGTEx
	ENSRNOG00055025031	RatGTEx
	ENSRNOG00060000856	RatGTEx
	ENSRNOG00065012819	RatGTEx
UniProt	A0A1B0GWK8_RAT	UniProtKB/TrEMBL
	A0A8L2R647_RAT	UniProtKB/TrEMBL
	A6HWD4	ENTREZGENE, UniProtKB/TrEMBL
	A6HWD5	ENTREZGENE, UniProtKB/TrEMBL
	ADIP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ssx2ip	SSX family member 2 interacting protein	LOC100909794	afadin- and alpha-actinin-binding protein-like	Data merged from RGD:6501544	737654	PROVISIONAL
2016-06-03	Ssx2ip	SSX family member 2 interacting protein	Ssx2ip	synovial sarcoma, X breakpoint 2 interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100909794	afadin- and alpha-actinin-binding protein-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-02-11	Ssx2ip	synovial sarcoma, X breakpoint 2 interacting protein	LOC308023	afadin- and alpha-actinin-binding protein ADIP	Symbol and Name updated to reflect Human and Mouse nomenclature	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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