Adgrg1 (adhesion G protein-coupled receptor G1)

Gene: Adgrg1 (adhesion G protein-coupled receptor G1) Rattus norvegicus

Analyze

Symbol:

Adgrg1

Name:

adhesion G protein-coupled receptor G1

RGD ID:

628617

Description:

Predicted to enable several functions, including collagen binding activity; extracellular matrix binding activity; and heparin binding activity. Predicted to be involved in several processes, including intracellular signal transduction; positive regulation of Rho protein signal transduction; and seminiferous tubule development. Predicted to act upstream of or within cerebral cortex regionalization; hematopoietic stem cell homeostasis; and positive regulation of neural precursor cell proliferation. Predicted to be located in glial limiting end-foot. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in bilateral frontoparietal polymicrogyria and bilateral perisylvian polymicrogyria. Orthologous to human ADGRG1 (adhesion G protein-coupled receptor G1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

adhesion G-protein coupled receptor G1; G protein-coupled receptor 56; G-protein coupled receptor 56; Gpr56; LOC102554158; uncharacterized LOC102554158

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,009,983 - 10,047,138 (-)	NCBI		GRCr8
mRatBN7.2	19	10,003,963 - 10,041,122 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,003,975 - 10,041,108 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	9,968,201 - 10,005,273 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,735,039 - 10,772,116 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,021,858 - 10,058,994 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,423,534 - 10,460,674 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,423,501 - 10,460,674 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,403,001 - 10,442,286 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,438,332 - 10,475,607 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	10,443,185 - 10,480,433 (-)	NCBI
Celera	19	9,891,471 - 9,928,021 (-)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

bilateral frontoparietal polymicrogyria (ISO)

bilateral perisylvian polymicrogyria (ISO)

developmental and epileptic encephalopathy (ISO)

Developmental Disabilities (ISO)

early infantile epileptic encephalopathy (ISO)

epilepsy (ISO)

Familial Prostate Cancer (ISO)

genetic disease (ISO)

Nervous System Malformations (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrolein (ISO)

acrylamide (EXP,ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atazanavir sulfate (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chenodeoxycholic acid (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

cortisol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deoxycholic acid (ISO)

dimethylarsinic acid (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

enzacamene (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fipronil (EXP)

formaldehyde (ISO)

FR900359 (ISO)

genistein (ISO)

gentamycin (EXP)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

hydrazine (ISO)

inulin (ISO)

iron atom (ISO)

iron(0) (ISO)

isobutanol (ISO)

Lasiocarpine (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

mifepristone (ISO)

mitomycin C (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N(4)-hydroxycytidine (ISO)

N-nitrosodiethylamine (EXP)

N-Nitrosopyrrolidine (ISO)

nefazodone (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

nicotine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

quercitrin (ISO)

raloxifene (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulforaphane (ISO)

Sunset Yellow FCF (ISO)

tamoxifen (ISO)

tartrazine (ISO)

temozolomide (ISO)

thioacetamide (EXP)

trametinib (ISO)

trichloroethene (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin D (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IBA)

angiogenesis (IEA,ISO,ISS)

brain development (ISO)

cell adhesion (IEA,ISO,ISS)

cell differentiation (IEA)

cell migration (ISO,ISS)

cell surface receptor signaling pathway (IEA)

cerebral cortex radial glia-guided migration (ISO,ISS)

cerebral cortex regionalization (IEA,ISO)

G protein-coupled receptor signaling pathway (IEA)

hematopoietic stem cell homeostasis (IEA,ISO)

layer formation in cerebral cortex (IEA,ISO,ISS)

negative regulation of cell population proliferation (IEA,ISO,ISS)

negative regulation of neuron migration (IEA,ISO,ISS)

nervous system development (IEA)

neural precursor cell proliferation (IEA,ISO)

positive regulation of cell adhesion (IEA,ISO,ISS)

positive regulation of neural precursor cell proliferation (IEA,ISO)

positive regulation of Rho protein signal transduction (IEA,ISO,ISS)

protein kinase C signaling (IEA,ISO,ISS)

Rho protein signal transduction (IEA,ISO,ISS)

seminiferous tubule development (IEA,ISO)

vascular endothelial growth factor production (IEA,ISO,ISS)

Cellular Component

extracellular region (IEA)

glial limiting end-foot (IEA,ISO,ISS)

membrane raft (IEA)

plasma membrane (IBA,IEA)

Molecular Function

collagen binding (IEA,ISO,ISS)

extracellular matrix binding (IEA,ISO,ISS)

G protein-coupled receptor activity (IBA,IEA,ISO,ISS)

heparin binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GPR56, a novel secretin-like human G-protein-coupled receptor gene.	Liu M, etal., Genomics 1999 Feb 1;55(3):296-305.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15044805	PMID:16757564	PMID:17945200	PMID:18509043	PMID:20981830	PMID:21349848	PMID:21708946	PMID:21724588	PMID:21768377	PMID:22871113	PMID:23376485	PMID:23533145
PMID:24531968	PMID:27068534	PMID:31304602

Genomics

Comparative Map Data

Adgrg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,009,983 - 10,047,138 (-)	NCBI		GRCr8
mRatBN7.2	19	10,003,963 - 10,041,122 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,003,975 - 10,041,108 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	9,968,201 - 10,005,273 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,735,039 - 10,772,116 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,021,858 - 10,058,994 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,423,534 - 10,460,674 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,423,501 - 10,460,674 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,403,001 - 10,442,286 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,438,332 - 10,475,607 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	10,443,185 - 10,480,433 (-)	NCBI
Celera	19	9,891,471 - 9,928,021 (-)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

ADGRG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,619,738 - 57,665,567 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,610,652 - 57,665,580 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	57,653,650 - 57,699,479 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,211,459 - 56,256,445 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	56,220,022 - 56,256,438	NCBI
Celera	16	42,155,129 - 42,200,163 (+)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,521,500 - 43,566,585 (+)	NCBI		HuRef
CHM1_1	16	59,061,969 - 59,107,000 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,414,941 - 63,460,767 (+)	NCBI		T2T-CHM13v2.0

Adgrg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	95,701,321 - 95,740,836 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	95,701,379 - 95,740,845 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	94,974,756 - 95,014,208 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	94,974,751 - 95,014,217 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,508,503 - 97,538,091 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	97,873,732 - 97,903,320 (+)	NCBI		MGSCv36	mm8
Celera	8	99,309,115 - 99,341,094 (+)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

Adgrg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,259,720 - 15,289,151 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	15,253,196 - 15,288,982 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADGRG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,090,347 - 67,136,251 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,011,226 - 73,057,121 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	37,896,177 - 37,942,040 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,027,946 - 57,074,221 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,036,425 - 57,074,221 (+)	Ensembl	panpan1.1		panPan2

ADGRG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,805,737 - 58,842,618 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,805,834 - 58,852,684 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,435,490 - 55,472,410 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,344,120 - 59,381,257 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,344,129 - 59,381,633 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	56,175,783 - 56,212,651 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	57,183,275 - 57,220,434 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	58,076,631 - 58,113,771 (-)	NCBI		UU_Cfam_GSD_1.0

Adgrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,905,813 - 49,935,816 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,671,868 - 9,681,988 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,653,233 - 9,683,258 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADGRG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,527,648 - 19,570,893 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	19,523,618 - 19,570,891 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,648,674 - 17,671,453 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADGRG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,559,792 - 43,595,906 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,570,189 - 43,596,087 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,602,512 - 32,646,023 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adgrg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,436,895 - 28,476,926 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	28,439,855 - 28,476,551 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Adgrg1
253 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	74
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000020921
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24688055	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat

Markers in Region

AI412938

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,004,184 - 10,004,323 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	10,423,756 - 10,423,894	NCBI	Rnor6.0
Rnor_5.0	19	10,403,223 - 10,403,361	UniSTS	Rnor5.0
RGSC_v3.4	19	10,438,554 - 10,438,692	UniSTS	RGSC3.4
Celera	19	9,891,693 - 9,891,831	UniSTS
RH 3.4 Map	19	95.01	UniSTS
Cytogenetic Map	19	p13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	25	28	20	11	20		2	74	35	40	10
Low		18	29	21	8	21	8	9			1	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_152242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF529886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB766806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK482497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO557428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV116515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EX488169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000020921 ⟹ ENSRNOP00000020921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	10,004,011 - 10,041,108 (-)	Ensembl
Rnor_6.0 Ensembl	19	10,423,582 - 10,460,674 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081223 ⟹ ENSRNOP00000072630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	10,423,542 - 10,460,674 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088048 ⟹ ENSRNOP00000071610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	10,003,975 - 10,034,234 (-)	Ensembl
Rnor_6.0 Ensembl	19	10,423,501 - 10,450,186 (-)	Ensembl

RefSeq Acc Id:

NM_152242 ⟹ NP_689448

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,983 - 10,047,138 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,041,122 (-)	NCBI
Rnor_6.0	19	10,423,534 - 10,460,674 (-)	NCBI
Rnor_5.0	19	10,403,001 - 10,442,286 (-)	NCBI
RGSC_v3.4	19	10,438,332 - 10,475,607 (-)	RGD
Celera	19	9,891,471 - 9,928,021 (-)	NCBI

Sequence:

show sequence

AGACCGTGTGATCCCAGCCTCCCACAAGGCAGCTCTTACTAACCAGGGAAGAGATGCCAAAAGT
CCACGGAGGCTGAAGACCCTGTAAAGCTTCGCCAGAAAACCTAGGAGTGTTCGAGGGCACTTGG
CACCGGAAGCTAGACCTGTAGGCGGAGCCTCACCTGGGTTGAGTTCACAGCTGCCTAGACAGGC
TCAGACTAGGTGCTGGGCACCTGGAAGGAGGAGGCAGAGGCACCAGCAGTAAAGCCTATCTATC
AACAGAAGGGCCTGCCTAGGCTTGGAGGTATAATGGCTGTCCAGGTGCTACTGCAGATGGTCTA
CTTCCTACTGACTCTGCTCTTTCTGGTGCAAGGTGCCCATGGTGCCAGCCCCCGAGAAGACTTC
CGCTTCTGTGGCCAGCGGAACCAGACACGTCAGAGCAACCTCCATTATGATCAAACTTCAGAGC
CTCACATTTTTGTATGGAACACAGACGAGAGCCTCACGATCCGTGCCCCATTCCCGGCAGCCCC
AGACATTCCCTACTTCTTCCCGGAACCTAGAGGACTCTATCATTTCTGCCTCTACTGGAGCCGC
CACACTGGGAGGCTCCACCTGCGCTATGGCAAGAATGATTACCTGCTTAGTAGCCGAGCCTCCA
ACCTCCTCTGCTACCGGAAACAGGAGGAGAGCCTGAAACAGGGGGCTCCACTGGTTGCCACCTC
TGTCAGCTCCTGGCAGAGCCCACAGAACACCAGCCTGCCGGGAGCTCCAAGCTTCATCTTCTCC
TTCCATAATGCCCCACATAAGGTCTCCCACAATGCATCTGTGAACATGTGTGACCTCAAGAAGG
AACTGCAGTTGCTTAGCAAGTTCCTGCAGCATCCTCACAAGGCCTCCAAGCGGCCCTCGGCAGC
GTTCATCAGTCAGCAGTTGCAGAACCTAGAGTCAAAGCTGACCTCCGTGAGCTTCCTGGGAGAC
ACACTGTCTTTTGAGGAGAACCGGGTCAATGCCACAGTGTGGAAGCTGCCACCCACAGCCGGGC
TGGAGGATCTGCAAATCCACTCCCAGCAGGAGGAGGAGCAGAGTGAGGTCCAGGCCTACTCCGT
GTTGCTTCCCCGGGCCGTATTCCAGCAGACCAGAGGCCGTCGCCGGGATGCCGCCAAGAGGCTC
CTGGTAGTCGACTTCAGCAGCCAAGCTTTGTTCCAGGACAAGAATTCTAGCCAAGTCCTGGGTG
AGAAGGTCTTGGGTATCGTCGTGCAGAACACCAAAGTCACTAACCTCTCAGATCCCGTGGTACT
CACCTTCCAGCACCAGCCACAGCCAAAGAACGTGACTCTGCAGTGTGTGTTCTGGGTTGAAGAC
CCGACATCAAGCAGCCCTGGGAGCTGGAGCAGTGAGGGCTGTGAGACTGTTAGCAGAGACACAC
AGACATCCTGCCTGTGTAACCATCTGACCTACTTTGCAGTGCTGATGGTGTCATCCATGGAGGT
AGAAGCCACTCACAAACACTACCTCACGCTCCTGTCCTACGTGGGCTGTGTCATCTCTGCCCTA
GCTTGTGTCTTCACCATCGCTGCGTACCTGTGCACCAGGAGGAAGTCACGTGACTACACCATCA
AAGTGCACATGAACCTGCTTCTGGCCGTCTTCCTCCTGGACGTGAGCTTCCTGCTCAGTGAGCC
CGTGGCGCTGATGGGCTCTGAAGCAGCCTGTCGCACCAGTGCCATGTTCCTGCACTTCTCCCTG
CTTGCCTGCCTCTCCTGGATGGGCCTGGAGGGCTACAATCTCTACCGACTGGTGGTGGAGGTCT
TCGGTACCTATGTCCCTGGCTATCTGCTCAAGCTGAGCACCGTGGGCTGGGGTTTTCCTGTCTT
CCTGGTCACTCTGGTGGCGTTGGTCGACGTGAATAACTATGGCCCCATCATCCTAGCTGTGCGC
CGGACTCCGGACCATGTCATCTACCCCTCTATGTGCTGGATCCGGGACTCTGTAGTTAGCTATG
TCACTAACCTGGGCCTCTTCAGCCTGGTGATCCTGTTCAACATGGCTATGCTGGCCACCATGGT
GGTGCAGATCCTGCGGCTTCGCCCACACAGCCAGAAGTGGCCCCACGTGCTGACTTTGCTGGGC
CTCAGCCTGGTCCTTGGCCTTCCCTGGGCCTTGGTCTTCTTTTCCTTTGCTTCTGGTACCTTCC
AGCTTGTCATCATCTACCTTTTCAGCATCATGACTTCCTTCCAAGGCTTCCTCATCTTCCTGTG
GTACTGGTCCATGAGGTTCCAGGCCCAAGGCGGTCCCTCTCCTCTGAAGAACAATTCAGACAGC
GCCAAGCTCCCCATCAGCTCCGGCAGCACCTCTTCCAGCCGCATCTAGGCCACCGCCACACCTC
CCCTCCCCTCTGGGGTTGGGGGTGCACATGCATGGCGTCTGCTCACATTGTCTGTGGCCTGGTG
CTGTGCCCAGCCTTGGTTGGTTAGTGGCATACTAGAGAAGGCCCTGGTCCTTGAAGGGGTAGGA
CTGTTGCTCTGGTAGGTAGATACCTAGCTTGCCTTGGGGATCACTCTGGTCCCCAAAGGACTCA
GAAGCACACTGCCATTCCGTTTGTGGGCCTGCCCTATTTCAGCCCGGAGCTGAGGCCTTGTCTT
TCTGGCCACCTCTGGGTCCAGCTGTTGCTGCTGGGTGTTGAGACCTGCAGGCCCAAGCTAGGGT
TAGATCTTGAAGGAGGCTGACACATCCAGCCTGAGACACAGCTGCCTTGGCTCTTGCTGCTCTG
TCTCTGTGGTCACCACGCAGATCAGGAGGTTGGCACTGGGGGTAAATGGACTGGGAGGAGGTTA
GGAGCTGAGCATCTTCCAAACCTGTCTGTAACTCCTTCTCTTCATTCCCCACCTCACCCCCTCC
TCTGTGGTCCCCTAGCACTCTACCTGCATCCTGGGGTCCTAGACCAGTGCTGTGATTAGGGGTA
GTAGTTCCCAGGAGTTTTCCTGGTGCCAGCTATAAACTTCTGTCTATTGTGTGGGCTTTGGCCT
CTGACTCAGGGCAGGTTCCTGGGCTGAACCAGGCCAACCTGTCTGAGCCTCTCTCCAAGCTGCC
TCATCTTTGTTCACACCTCAGAGGGGCCACCGCCTCTCCTGAAGACTCCCTCTGGCAAGAACTG
TGGGATACAGCCTACTTTTCAACCCAGCATTCCGAAGACCAAGACGGCACCCTCTGGTGACAGT
GGCCAAGCTTGATGCTCTCCTGAGAAGTGGTCTTCAAATCCCTGTGGGTGTATCTGAAGATACT
GGGCTTGCCTGTCGTGAATTCTGTCTTGCTAACATACAGTGAGGGGACCCCCCCGCCCCCCACG
AAAGCTCTCACGAAGTCCTGGAGCTTTAGGCATGGGGCTGAGAATCCAGGAGGACTTCCTGCAG
GAGGCAGCGTTTCATCTTGACCTCAGCCTTCTAGTTGGGGAGGAGGATGTTCTTTTTTAAAGAC
CAGTTCATTTGTCTTTTGATATTAAAGCTCTTTGTAGAGAGTTTGGAAACTGTAGGAGATTGTT
GAGAAGAAAAATAAAAATCAGCTGTTATCTAATGCCATGGTAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_008772264 ⟹ XP_008770486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,044,975 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,034,338 (-)	NCBI
Rnor_6.0	19	10,423,534 - 10,456,145 (-)	NCBI

Sequence:

show sequence

CAACCCCTCCCTGTTGCTTTCTAATCCATAGCCATGGGTTCCTGTGTCCCTGAAGAGCTCTCCT
TGGTGCCCAGAGAGCAGGTGCTAATATTTTGTCTTCGCCTAACAGCGAAGGGGTAGCTGGGTAG
AGATGCTTGCCCAAGTCACCATCTGGCAGAGGAGTCTGCTGTAGCCAGTTGGCCAGGGGTCCGC
ATCAGTATTCTCTCTTCCATTTCTTATAAAGAAAGGGCAACTGTCAGCTTCCTGTGCTCCCCAC
CCCATGCTGACTCTGTCACCAGCCTGTAGTCCCACAGCCCTCCCTGTGGAGCCCTTTTCTAGCT
GAGTCCTGGCCTGGTGCTTCTAGTAGCCATGGGAACCAGAGAGGACATGTGGTTCCCTAATGCT
ACAGATCCACTCTGCATTAGGGTAGCCTTTTCTCGCCGTCTCCCAGATTTGCACCCTACTCCTG
ACATGTATACATGTCAGGGATGCTTTTGATACCTCCCCTTTCCCTGTTTGGCTTTCCTCAGCCT
TGTTTGTCTCAGACTTTGGATACAAGACTTTACCCCAGCTTTTCTCTGTCTCTATCTTCAAGAC
ACGGCCTGAGCTCAGCCACTTGTCCACACCTCACGTCATACCCACCCAGTTTAAGAGGAGAGCC
AGGCCAAAAGGATAACCACCTGGGAATTCTGTTAAATTTTAGGTTCTTATGAGACAGATCTGGG
GCATATCTGAAATCTGAGGTTTCTGGCAATTTTTCATAACTTGAGCCCTGAGCACAATCCTTCT
TGTGAGAGTGGATTTTTTTTCAAAATCTTCCATTATCTGGATCCATTTCCTTCAAATGGCTCTC
CCTACCTCTCCACCCCTGTTGCTGTTACCCCTAGCAGTTTCTTCTGAAGGTCTCTTTTTCTTGA
ACTTCCTAACTTCTCCAATATTCGGCTGGGCTCGGGAGCCATTTGGTCCACACCCAGCCTTTGG
AGGGTGTGGCTGAGAGCCCCTTGCTTTCTCTGTACACGGTCCTGCTCTGTATGGTGGAGACATG
GTGGAGATGTTGAGGCTAAGGGCCTGTACCTGCTGGATGTTTGCTGAGAGCCCGAGAGCCAGCT
GCATCTCACGGAGTGGTGGTGGTGTGCAGTGGACCACTGGGCGCCTGCTTGCCACCTCTACTTC
CCCAGCTGTGAGACCTTGAAGAAGTTAACTACCTTCCCTGAGCATCATCCCCCCCCCTCCCTTG
CCCCTCTTCCTTCTTCATTACCACATTCCTGGAGAATTCCTTCGGACTCATTAATTGTCTGGGC
AGGGGCTGGGAAGCAGGGAGGAGGCAGAGGGAAGCCTGGAATGCCGAGCTGCAAGGCCTGCTAT
TTTGTTACGGCCATTAGTGTTATTGTTGCCACTTGCCCTCATTAGGTTGTGAAATCCTCTCCGG
TGCTTCATTTTGCTCACACAGTATGGGGTATGGGAGAGCAAAGTCCGGAGGCTTCACTCTGGAG
GGCCATGTTTATCCAAAACACTCCCCCTGCCACCCACTTCCCTCCCTTCCCCCAACCCCCTGGG
CTGTGCAGGACCAGTGAACCTCAGCGGTGGACGGTACATCTAACAGACAGCAGCCAGAGTAGGC
ATGATGGGGTTGGCTCACTCCCAAATTGTTCTTTCTGAGGTTTTGGAATGACTCTTTACCTGGG
CCTCAGTTTCCCATTTGGCTCAGCTGATAGACAGGCTATTTCCGGAAGTCCCTGGGGTCTCAGG
GTCCAGGATGTGAGTTTTGAAAGGTTGAGACTGAGGTCTGGCTCCCTGCTGGGAAGACACTCAG
AGACATGGGTCAGCAGTCAGCCATATGTGGCCTCCAGCCAGGCGGCCTGATACCCCCTTCCTCT
TGGAGTGCTTTCCGCTCTGCCAGTCAGCGCTGGCTCTGCCTGCTGCCACGGAGGTTAGACTGTC
CTTCAGGAAGGGGTAGTTGTTGGCTGGGCCTGGAGGAAGGGGCAGCATCCGAGTGGCCTGTTGC
CATGGCAAACTGGCTTTTTTGAAAGAACTTCAGGGGAGCAGCCCCCAGGGACTCAATAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACTCATCCCAGCTCAT
ACCCATTTTTGAAACTGTCACCAGGGTGCTGGGATGATGAGAGGAGAGACCCTGGTCCCCACTT
GCCAGGCCTGAGTCATGGGCATCCCCCAAGGTCCCCGCCTCACCTCCGTCAGCCCTGCCTCCCT
CTGAGAAAGCCATGACTCACAGTTCGCCAGTCATCTCATCGCCAGCCTGAAGGGAGGAGCCGAG
CAAGAGCAGGGGGGTGTCCCGGCCCTCCCCCGGTCCTCCGGTTCTCCCGGCTCCACACAGGCTG
CCGCCTGGTCTCTACTATGGGAAAGGGGGCTGCCGGCTGGTAGGAGCCTTCCCCCCACCCCAGC
CAGTGCACTTGCTAGCTCTCGCTCACACTCTTACCAGAGACTTAGACTGGAAGAATCAGCGTTG
GAGGTGAATCCTGAAAGGTGGTCCAGCTGCCTGGCTCCTTCCAGAACCCGCTGCATGGCACCAG
GTATAATGGCTGTCCAGGTGCTACTGCAGATGGTCTACTTCCTACTGACTCTGCTCTTTCTGGT
GCAAGGTGCCCATGGTGCCAGCCCCCGAGAAGACTTCCGCTTCTGTGGCCAGCGGAACCAGACA
CGTCAGAGCAACCTCCATTATGATCAAACTTCAGAGCCTCACATTTTTGTATGGAACACAGACG
AGAGCCTCACGATCCGTGCCCCATTCCCGGCAGCCCCAGACATTCCCTACTTCTTCCCGGAACC
TAGAGGACTCTATCATTTCTGCCTCTACTGGAGCCGCCACACTGGGAGGCTCCACCTGCGCTAT
GGCAAGAATGATTACCTGCTTAGTAGCCGAGCCTCCAACCTCCTCTGCTACCGGAAACAGGAGG
AGAGCCTGAAACAGGGGGCTCCACTGGTTGCCACCTCTGTCAGCTCCTGGCAGAGCCCACAGAA
CACCAGCCTGCCGGGAGCTCCAAGCTTCATCTTCTCCTTCCATAATGCCCCACATAAGGTCTCC
CACAATGCATCTGTGAACATGTGTGACCTCAAGAAGGAACTGCAGTTGCTTAGCAAGTTCCTGC
AGCATCCTCACAAGGCCTCCAAGCGGCCCTCGGCAGCGTTCATCAGTCAGCAGTTGCAGAACCT
AGAGTCAAAGCTGACCTCCGTGAGCTTCCTGGGAGACACACTGTCTTTTGAGGAGAACCGGGTC
AATGCCACAGTGTGGAAGCTGCCACCCACAGCCGGGCTGGAGGATCTGCAAATCCACTCCCAGC
AGGAGGAGGAGCAGAGTGAGGTCCAGGCCTACTCCGTGTTGCTTCCCCGGGCCGTATTCCAGCA
GACCAGAGGCCGTCGCCGGGATGCCGCCAAGAGGCTCCTGGTAGTCGACTTCAGCAGCCAAGCT
TTGTTCCAGGACAAGAATTCTAGCCAAGTCCTGGGTGAGAAGGTCTTGGGTATCGTCGTGCAGA
ACACCAAAGTCACTAACCTCTCAGATCCCGTGGTACTCACCTTCCAGCACCAGCCACAGCCAAA
GAACGTGACTCTGCAGTGTGTGTTCTGGGTTGAAGACCCGACATCAAGCAGCCCTGGGAGCTGG
AGCAGTGAGGGCTGTGAGACTGTTAGCAGAGACACACAGACATCCTGCCTGTGTAACCATCTGA
CCTACTTTGCAGTGCTGATGGTGTCATCCATGGAGGTAGAAGCCACTCACAAACACTACCTCAC
GCTCCTGTCCTACGTGGGCTGTGTCATCTCTGCCCTAGCTTGTGTCTTCACCATCGCTGCGTAC
CTGTGCACCAGGAGGAAGTCACGTGACTACACCATCAAAGTGCACATGAACCTGCTTCTGGCCG
TCTTCCTCCTGGACGTGAGCTTCCTGCTCAGTGAGCCCGTGGCGCTGATGGGCTCTGAAGCAGC
CTGTCGCACCAGTGCCATGTTCCTGCACTTCTCCCTGCTTGCCTGCCTCTCCTGGATGGGCCTG
GAGGGCTACAATCTCTACCGACTGGTGGTGGAGGTCTTCGGTACCTATGTCCCTGGCTATCTGC
TCAAGCTGAGCACCGTGGGCTGGGGTTTTCCTGTCTTCCTGGTCACTCTGGTGGCGTTGGTCGA
CGTGAATAACTATGGCCCCATCATCCTAGCTGTGCGCCGGACTCCGGACCATGTCATCTACCCC
TCTATGTGCTGGATCCGGGACTCTGTAGTTAGCTATGTCACTAACCTGGGCCTCTTCAGCCTGG
TGATCCTGTTCAACATGGCTATGCTGGCCACCATGGTGGTGCAGATCCTGCGGCTTCGCCCACA
CAGCCAGAAGTGGCCCCACGTGCTGACTTTGCTGGGCCTCAGCCTGGTCCTTGGCCTTCCCTGG
GCCTTGGTCTTCTTTTCCTTTGCTTCTGGTACCTTCCAGCTTGTCATCATCTACCTTTTCAGCA
TCATGACTTCCTTCCAAGGCTTCCTCATCTTCCTGTGGTACTGGTCCATGAGGTTCCAGGCCCA
AGGCGGTCCCTCTCCTCTGAAGAACAATTCAGACAGCGCCAAGCTCCCCATCAGCTCCGGCAGC
ACCTCTTCCAGCCGCATCTAGGCCACCGCCACACCTCCCCTCCCCTCTGGGGTTGGGGGTGCAC
ATGCATGGCGTCTGCTCACATTGTCTGTGGCCTGGTGCTGTGCCCAGCCTTGGTTGGTTAGTGG
CATACTAGAGAAGGCCCTGGTCCTTGAAGGGGTAGGACTGTTGCTCTGGTAGGTAGATACCTAG
CTTGCCTTGGGGATCACTCTGGTCCCCAAAGGACTCAGAAGCACACTGCCATTCCGTTTGTGGG
CCTGCCCTATTTCAGCCCGGAGCTGAGGCCTTGTCTTTCTGGCCACCTCTGGGTCCAGCTGTTG
CTGCTGGGTGTTGAGACCTGCAGGCCCAAGCTAGGGTTAGATCTTGAAGGAGGCTGACACATCC
AGCCTGAGACACAGCTGCCTTGGCTCTTGCTGCTCTGTCTCTGTGGTCACCACGCAGATCAGGA
GGTTGGCACTGGGGGTAAATGGACTGGGAGGAGGTTAGGAGCTGAGCATCTTCCAAACCTGTCT
GTAACTCCTTCTCTTCATTCCCCACCTCACCCCCTCCTCTGTGGTCCCCTAGCACTCTACCTGC
ATCCTGGGGTCCTAGACCAGTGCTGTGATTAGGGGTAGTAGTTCCCAGGAGTTTTCCTGGTGCC
AGCTATAAACTTCTGTCTATTGTGTGGGCTTTGGCCTCTGACTCAGGGCAGGTTCCTGGGCTGA
ACCAGGCCAACCTGTCTGAGCCTCTCTCCAAGCTGCCTCATCTTTGTTCACACCTCAGAGGGGC
CACCGCCTCTCCTGAAGACTCCCTCTGGCAAGAACTGTGGGATACAGCCTACTTTTCAACCCAG
CATTCCGAAGACCAAGACGGCACCCTCTGGTGACAGTGGCCAAGCTTGATGCTCTCCTGAGAAG
TGGTCTTCAAATCCCTGTGGGTGTATCTGAAGATACTGGGCTTGCCTGTCGTGAATTCTGTCTT
GCTAACATACAGTGAGGGGACCCCCCCGCCCCCCACGAAAGCTCTCACGAAGTCCTGGAGCTTT
AGGCATGGGGCTGAGAATCCAGGAGGACTTCCTGCAGGAGGCAGCGTTTCATCTTGACCTCAGC
CTTCTAGTTGGGGAGGAGGATGTTCTTTTTTAAAGACCAGTTCATTTGTCTTTTGATATTAAAG
CTCTTTGTAGAGAGTTTGGAAACTGTAGGAGATTGTTGAGAAGAAAAATAAAAATCAGCTGTTA
TCTAATGCCATGGTAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_008772267 ⟹ XP_008770489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,029,517 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,023,490 (-)	NCBI
Rnor_6.0	19	10,423,534 - 10,443,050 (-)	NCBI

Sequence:

show sequence

TTTTTCGGCTCTTTTTTCCTCCCTTCTCCTGCTTTCCACCATCTCCATTTCTTCTCCTTTCTTC
GCTCTCTTTCCTGTAATCCTGCATCCTCTCCCTCCTCCCTCCTCTGACACTGACATGTAGCTAA
TGGGTGGTGGGTTTTCGGGACCCTGGAGGCCATCATAGCTGGCCCTCTAAGGGGACACGAACAG
CCTGGAGAGCCATCAGGAAGTGGTTAGGGGCAGCCACACTCCCTCTCTCTCTAGCTGAACATTT
TTGAGTCTCAGCTGTAGCCGGTAGCCGTGGTCACAGCATAGGTCTCAGAGAAGGGTGGTGAAGG
TAGATGGACAAGGAGAGCTGGTAACACCACAGCCTTGGGAAGAGCCAGGGAGAAGCCGAGATCC
GAGATCCGTTGTTACCTGGTATAATGGCTGTCCAGGTGCTACTGCAGATGGTCTACTTCCTACT
GACTCTGCTCTTTCTGGTGCAAGGTGCCCATGGTGCCAGCCCCCGAGAAGACTTCCGCTTCTGT
GGCCAGCGGAACCAGACACGTCAGAGCAACCTCCATTATGATCAAACTTCAGAGCCTCACATTT
TTGTATGGAACACAGACGAGAGCCTCACGATCCGTGCCCCATTCCCGGCAGCCCCAGACATTCC
CTACTTCTTCCCGGAACCTAGAGGACTCTATCATTTCTGCCTCTACTGGAGCCGCCACACTGGG
AGGCTCCACCTGCGCTATGGCAAGAATGATTACCTGCTTAGTAGCCGAGCCTCCAACCTCCTCT
GCTACCGGAAACAGGAGGAGAGCCTGAAACAGGGGGCTCCACTGGTTGCCACCTCTGTCAGCTC
CTGGCAGAGCCCACAGAACACCAGCCTGCCGGGAGCTCCAAGCTTCATCTTCTCCTTCCATAAT
GCCCCACATAAGGTCTCCCACAATGCATCTGTGAACATGTGTGACCTCAAGAAGGAACTGCAGT
TGCTTAGCAAGTTCCTGCAGCATCCTCACAAGGCCTCCAAGCGGCCCTCGGCAGCGTTCATCAG
TCAGCAGTTGCAGAACCTAGAGTCAAAGCTGACCTCCGTGAGCTTCCTGGGAGACACACTGTCT
TTTGAGGAGAACCGGGTCAATGCCACAGTGTGGAAGCTGCCACCCACAGCCGGGCTGGAGGATC
TGCAAATCCACTCCCAGCAGGAGGAGGAGCAGAGTGAGGTCCAGGCCTACTCCGTGTTGCTTCC
CCGGGCCGTATTCCAGCAGACCAGAGGCCGTCGCCGGGATGCCGCCAAGAGGCTCCTGGTAGTC
GACTTCAGCAGCCAAGCTTTGTTCCAGGACAAGAATTCTAGCCAAGTCCTGGGTGAGAAGGTCT
TGGGTATCGTCGTGCAGAACACCAAAGTCACTAACCTCTCAGATCCCGTGGTACTCACCTTCCA
GCACCAGCCACAGCCAAAGAACGTGACTCTGCAGTGTGTGTTCTGGGTTGAAGACCCGACATCA
AGCAGCCCTGGGAGCTGGAGCAGTGAGGGCTGTGAGACTGTTAGCAGAGACACACAGACATCCT
GCCTGTGTAACCATCTGACCTACTTTGCAGTGCTGATGGTGTCATCCATGGAGGTAGAAGCCAC
TCACAAACACTACCTCACGCTCCTGTCCTACGTGGGCTGTGTCATCTCTGCCCTAGCTTGTGTC
TTCACCATCGCTGCGTACCTGTGCACCAGGAGGAAGTCACGTGACTACACCATCAAAGTGCACA
TGAACCTGCTTCTGGCCGTCTTCCTCCTGGACGTGAGCTTCCTGCTCAGTGAGCCCGTGGCGCT
GATGGGCTCTGAAGCAGCCTGTCGCACCAGTGCCATGTTCCTGCACTTCTCCCTGCTTGCCTGC
CTCTCCTGGATGGGCCTGGAGGGCTACAATCTCTACCGACTGGTGGTGGAGGTCTTCGGTACCT
ATGTCCCTGGCTATCTGCTCAAGCTGAGCACCGTGGGCTGGGGTTTTCCTGTCTTCCTGGTCAC
TCTGGTGGCGTTGGTCGACGTGAATAACTATGGCCCCATCATCCTAGCTGTGCGCCGGACTCCG
GACCATGTCATCTACCCCTCTATGTGCTGGATCCGGGACTCTGTAGTTAGCTATGTCACTAACC
TGGGCCTCTTCAGCCTGGTGATCCTGTTCAACATGGCTATGCTGGCCACCATGGTGGTGCAGAT
CCTGCGGCTTCGCCCACACAGCCAGAAGTGGCCCCACGTGCTGACTTTGCTGGGCCTCAGCCTG
GTCCTTGGCCTTCCCTGGGCCTTGGTCTTCTTTTCCTTTGCTTCTGGTACCTTCCAGCTTGTCA
TCATCTACCTTTTCAGCATCATGACTTCCTTCCAAGGCTTCCTCATCTTCCTGTGGTACTGGTC
CATGAGGTTCCAGGCCCAAGGCGGTCCCTCTCCTCTGAAGAACAATTCAGACAGCGCCAAGCTC
CCCATCAGCTCCGGCAGCACCTCTTCCAGCCGCATCTAGGCCACCGCCACACCTCCCCTCCCCT
CTGGGGTTGGGGGTGCACATGCATGGCGTCTGCTCACATTGTCTGTGGCCTGGTGCTGTGCCCA
GCCTTGGTTGGTTAGTGGCATACTAGAGAAGGCCCTGGTCCTTGAAGGGGTAGGACTGTTGCTC
TGGTAGGTAGATACCTAGCTTGCCTTGGGGATCACTCTGGTCCCCAAAGGACTCAGAAGCACAC
TGCCATTCCGTTTGTGGGCCTGCCCTATTTCAGCCCGGAGCTGAGGCCTTGTCTTTCTGGCCAC
CTCTGGGTCCAGCTGTTGCTGCTGGGTGTTGAGACCTGCAGGCCCAAGCTAGGGTTAGATCTTG
AAGGAGGCTGACACATCCAGCCTGAGACACAGCTGCCTTGGCTCTTGCTGCTCTGTCTCTGTGG
TCACCACGCAGATCAGGAGGTTGGCACTGGGGGTAAATGGACTGGGAGGAGGTTAGGAGCTGAG
CATCTTCCAAACCTGTCTGTAACTCCTTCTCTTCATTCCCCACCTCACCCCCTCCTCTGTGGTC
CCCTAGCACTCTACCTGCATCCTGGGGTCCTAGACCAGTGCTGTGATTAGGGGTAGTAGTTCCC
AGGAGTTTTCCTGGTGCCAGCTATAAACTTCTGTCTATTGTGTGGGCTTTGGCCTCTGACTCAG
GGCAGGTTCCTGGGCTGAACCAGGCCAACCTGTCTGAGCCTCTCTCCAAGCTGCCTCATCTTTG
TTCACACCTCAGAGGGGCCACCGCCTCTCCTGAAGACTCCCTCTGGCAAGAACTGTGGGATACA
GCCTACTTTTCAACCCAGCATTCCGAAGACCAAGACGGCACCCTCTGGTGACAGTGGCCAAGCT
TGATGCTCTCCTGAGAAGTGGTCTTCAAATCCCTGTGGGTGTATCTGAAGATACTGGGCTTGCC
TGTCGTGAATTCTGTCTTGCTAACATACAGTGAGGGGACCCCCCCGCCCCCCACGAAAGCTCTC
ACGAAGTCCTGGAGCTTTAGGCATGGGGCTGAGAATCCAGGAGGACTTCCTGCAGGAGGCAGCG
TTTCATCTTGACCTCAGCCTTCTAGTTGGGGAGGAGGATGTTCTTTTTTAAAGACCAGTTCATT
TGTCTTTTGATATTAAAGCTCTTTGTAGAGAGTTTGGAAACTGTAGGAGATTGTTGAGAAGAAA
AATAAAAATCAGCTGTTATCTAATGCCATGGTAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_008772270 ⟹ XP_008770492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,029,686 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,023,662 (-)	NCBI
Rnor_6.0	19	10,423,534 - 10,444,900 (-)	NCBI

Sequence:

show sequence

TTTTCCTCTTCCTCCAGACCCAAAATAGAGCCTGAATGGTCCCAGGCTCTGGCAATGAGACAAT
AGTGGCCTGCTGACCGAGGCAGCCTGCTGGCCTGGGTCCATGGGCTGGAGGCAGTGGGCTAGCA
TGCTCAGGGCTCCAAGCCCAGCTGCTTTTCCCAGGGCCCGTGCCAGTCCTTCCACCTGAGGCGT
GGAATCTCCTAGAGTCAAAGGTGCTCTGAGGAAAGTCTTGCAGTGACTCAGGCTCATTAGAGGC
CTGGGACCCTGTGCCTCAGCCTTCAGAGTCCCACTCGGTCCTTATCTGCTGCTGACTGGAGCTG
GAGGCCTTTAGTTACCTCTCTGCTCTCACTCAAGTTTGGAGGTCAGAGGTGACCTCCTGGGATG
AATATCTTCCCTTTTGACTCACTGGGTAGAAATGGGTCACAGAGCTAAGAGCTGTGCCCACTTA
GAAAGGAGTGAGTGCCCTGTTTAAGGGGAGGGGACCAGACGGGATGAGATGGCTCATTAGAGTC
TCAGAGATCTGCCTTTGAGTTTCATATCCTGCCCTTCCCAGCGAGGTAGCCTTGAGCAATCACA
GCCTCTCTTCAGACTCTAGAGTCTTGGTTCAGCATGGGCTCAGAGTGGTAGAAATGAGTTTCTA
AAACGCCCAGTGCTAGGTGCAAGGCCTCAGAAGCCTTGAATGTCCTGCTCTCTTCTTGGACAGG
AAAAGAGAGCCCAGAAACTCCATCCATAGTCTGGGAGTGCCTGAAGAGAGATAAGCAGAAGGAG
CCTCAGGCCTGGGCTGACTCACGAAGGGGACTCTGAGTGAGCCGAGGCAATCTGGGAAGGCTTC
TAGGAGGAGGCAGACTCTTGGCCTTTTCAGGGAAGGATGGCATACACTCTGTTTACTGCAGCCA
ATGGTAGGGATTAGAGGGTAGGCCACCTGACTTGTGGCCAAGGCCATAGGGAGGCAGGCAGCAA
GTGCCCTCCTCCAACAGGTACTCATTTGGTCAAGGGTCTTAACTCCCATCCTGTTCTAAAACCA
CACAGTCATTCTGGGGGTTAGAAGTTGTGGTACACATCTGAGAGCTCAGGACTCGAGGCTGAGG
CAGGAGGATAGCAAATTCTCTCTCCTGTAACCTTGTATCTCCCCCCACCCATCTCCCCAGATGC
TCACATTAGCTAATGGCGGTGTGTTGTCGGGGAACCCTAGGGAAGGACCGTCAGACATAGCTGG
TCCTCTAAGGGGATACACACAGCATACTTGCCTGGACTACATCGCAAGTCCTTCCTTCCCTCAT
GCTTCTACCCTCCAAGGAAAAAATGTCATTGCTGACTGACTGGAAGAGTTTGTGCATAAATCTT
CCATTCTGCTTCTCTAGAGAACTTGGGTGCTCCGGGGCTTTGGGGTCCCCTCAAGACAGATCCC
TGATACTCTAGGACCTGCTCTCTCACATGTGAACCCAGTTTGTCCCTGCCAGCACCGGCCTAGC
CTGGGGGGCCTTAGGATGAATGCGCTCATGCTTTGGTACAGACAAGTTAGAGAGCCCGCGCTCT
AAGCCAGGCAGTGACGCAGTCCATGCAGCTGCCAACGGTTGCCAGGGGAACGGTTGCCAGGGGC
TGCTGTCACCTGCGCCCCTTCCTCCCCCTTGGCGCTGGAGGCCCAGCTTCTCAGCCCAGCTTCC
CGCCTGCCCCCTTTGTTTGGAGCGCTAGTAAGGGGGTGGTGACTGGGGGGCAGGCTTTCATGCG
ACCTTCAGCCCCCTATTCTAGGGGAAAGTGTCCCTTATTCCAGTATTCTGCTGCCTGCAAACAG
GGAGTTTTCATCCAGTCACTCTAGCCTGGAGGAGAAAGCCAGGTATAATGGCTGTCCAGGTGCT
ACTGCAGATGGTCTACTTCCTACTGACTCTGCTCTTTCTGGTGCAAGGTGCCCATGGTGCCAGC
CCCCGAGAAGACTTCCGCTTCTGTGGCCAGCGGAACCAGACACGTCAGAGCAACCTCCATTATG
ATCAAACTTCAGAGCCTCACATTTTTGTATGGAACACAGACGAGAGCCTCACGATCCGTGCCCC
ATTCCCGGCAGCCCCAGACATTCCCTACTTCTTCCCGGAACCTAGAGGACTCTATCATTTCTGC
CTCTACTGGAGCCGCCACACTGGGAGGCTCCACCTGCGCTATGGCAAGAATGATTACCTGCTTA
GTAGCCGAGCCTCCAACCTCCTCTGCTACCGGAAACAGGAGGAGAGCCTGAAACAGGGGGCTCC
ACTGGTTGCCACCTCTGTCAGCTCCTGGCAGAGCCCACAGAACACCAGCCTGCCGGGAGCTCCA
AGCTTCATCTTCTCCTTCCATAATGCCCCACATAAGGTCTCCCACAATGCATCTGTGAACATGT
GTGACCTCAAGAAGGAACTGCAGTTGCTTAGCAAGTTCCTGCAGCATCCTCACAAGGCCTCCAA
GCGGCCCTCGGCAGCGTTCATCAGTCAGCAGTTGCAGAACCTAGAGTCAAAGCTGACCTCCGTG
AGCTTCCTGGGAGACACACTGTCTTTTGAGGAGAACCGGGTCAATGCCACAGTGTGGAAGCTGC
CACCCACAGCCGGGCTGGAGGATCTGCAAATCCACTCCCAGCAGGAGGAGGAGCAGAGTGAGGT
CCAGGCCTACTCCGTGTTGCTTCCCCGGGCCGTATTCCAGCAGACCAGAGGCCGTCGCCGGGAT
GCCGCCAAGAGGCTCCTGGTAGTCGACTTCAGCAGCCAAGCTTTGTTCCAGGACAAGAATTCTA
GCCAAGTCCTGGGTGAGAAGGTCTTGGGTATCGTCGTGCAGAACACCAAAGTCACTAACCTCTC
AGATCCCGTGGTACTCACCTTCCAGCACCAGCCACAGCCAAAGAACGTGACTCTGCAGTGTGTG
TTCTGGGTTGAAGACCCGACATCAAGCAGCCCTGGGAGCTGGAGCAGTGAGGGCTGTGAGACTG
TTAGCAGAGACACACAGACATCCTGCCTGTGTAACCATCTGACCTACTTTGCAGTGCTGATGGT
GTCATCCATGGAGGTAGAAGCCACTCACAAACACTACCTCACGCTCCTGTCCTACGTGGGCTGT
GTCATCTCTGCCCTAGCTTGTGTCTTCACCATCGCTGCGTACCTGTGCACCAGGAGGAAGTCAC
GTGACTACACCATCAAAGTGCACATGAACCTGCTTCTGGCCGTCTTCCTCCTGGACGTGAGCTT
CCTGCTCAGTGAGCCCGTGGCGCTGATGGGCTCTGAAGCAGCCTGTCGCACCAGTGCCATGTTC
CTGCACTTCTCCCTGCTTGCCTGCCTCTCCTGGATGGGCCTGGAGGGCTACAATCTCTACCGAC
TGGTGGTGGAGGTCTTCGGTACCTATGTCCCTGGCTATCTGCTCAAGCTGAGCACCGTGGGCTG
GGGTTTTCCTGTCTTCCTGGTCACTCTGGTGGCGTTGGTCGACGTGAATAACTATGGCCCCATC
ATCCTAGCTGTGCGCCGGACTCCGGACCATGTCATCTACCCCTCTATGTGCTGGATCCGGGACT
CTGTAGTTAGCTATGTCACTAACCTGGGCCTCTTCAGCCTGGTGATCCTGTTCAACATGGCTAT
GCTGGCCACCATGGTGGTGCAGATCCTGCGGCTTCGCCCACACAGCCAGAAGTGGCCCCACGTG
CTGACTTTGCTGGGCCTCAGCCTGGTCCTTGGCCTTCCCTGGGCCTTGGTCTTCTTTTCCTTTG
CTTCTGGTACCTTCCAGCTTGTCATCATCTACCTTTTCAGCATCATGACTTCCTTCCAAGGCTT
CCTCATCTTCCTGTGGTACTGGTCCATGAGGTTCCAGGCCCAAGGCGGTCCCTCTCCTCTGAAG
AACAATTCAGACAGCGCCAAGCTCCCCATCAGCTCCGGCAGCACCTCTTCCAGCCGCATCTAGG
CCACCGCCACACCTCCCCTCCCCTCTGGGGTTGGGGGTGCACATGCATGGCGTCTGCTCACATT
GTCTGTGGCCTGGTGCTGTGCCCAGCCTTGGTTGGTTAGTGGCATACTAGAGAAGGCCCTGGTC
CTTGAAGGGGTAGGACTGTTGCTCTGGTAGGTAGATACCTAGCTTGCCTTGGGGATCACTCTGG
TCCCCAAAGGACTCAGAAGCACACTGCCATTCCGTTTGTGGGCCTGCCCTATTTCAGCCCGGAG
CTGAGGCCTTGTCTTTCTGGCCACCTCTGGGTCCAGCTGTTGCTGCTGGGTGTTGAGACCTGCA
GGCCCAAGCTAGGGTTAGATCTTGAAGGAGGCTGACACATCCAGCCTGAGACACAGCTGCCTTG
GCTCTTGCTGCTCTGTCTCTGTGGTCACCACGCAGATCAGGAGGTTGGCACTGGGGGTAAATGG
ACTGGGAGGAGGTTAGGAGCTGAGCATCTTCCAAACCTGTCTGTAACTCCTTCTCTTCATTCCC
CACCTCACCCCCTCCTCTGTGGTCCCCTAGCACTCTACCTGCATCCTGGGGTCCTAGACCAGTG
CTGTGATTAGGGGTAGTAGTTCCCAGGAGTTTTCCTGGTGCCAGCTATAAACTTCTGTCTATTG
TGTGGGCTTTGGCCTCTGACTCAGGGCAGGTTCCTGGGCTGAACCAGGCCAACCTGTCTGAGCC
TCTCTCCAAGCTGCCTCATCTTTGTTCACACCTCAGAGGGGCCACCGCCTCTCCTGAAGACTCC
CTCTGGCAAGAACTGTGGGATACAGCCTACTTTTCAACCCAGCATTCCGAAGACCAAGACGGCA
CCCTCTGGTGACAGTGGCCAAGCTTGATGCTCTCCTGAGAAGTGGTCTTCAAATCCCTGTGGGT
GTATCTGAAGATACTGGGCTTGCCTGTCGTGAATTCTGTCTTGCTAACATACAGTGAGGGGACC
CCCCCGCCCCCCACGAAAGCTCTCACGAAGTCCTGGAGCTTTAGGCATGGGGCTGAGAATCCAG
GAGGACTTCCTGCAGGAGGCAGCGTTTCATCTTGACCTCAGCCTTCTAGTTGGGGAGGAGGATG
TTCTTTTTTAAAGACCAGTTCATTTGTCTTTTGATATTAAAGCTCTTTGTAGAGAGTTTGGAAA
CTGTAGGAGATTGTTGAGAAGAAAAATAAAAATCAGCTGTTATCTAATGCCATGGTAAAAAGCA

hide sequence

RefSeq Acc Id:

XM_039097527 ⟹ XP_038953455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,028,290 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,022,277 (-)	NCBI

RefSeq Acc Id:

XM_039097528 ⟹ XP_038953456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,024,553 (-)	NCBI
mRatBN7.2	19	10,003,963 - 10,018,543 (-)	NCBI

RefSeq Acc Id:

XM_063277826 ⟹ XP_063133896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,040,355 (-)	NCBI

RefSeq Acc Id:

XM_063277827 ⟹ XP_063133897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,009,986 - 10,021,973 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_689448	(Get FASTA)	NCBI Sequence Viewer
	XP_008770486	(Get FASTA)	NCBI Sequence Viewer
	XP_008770489	(Get FASTA)	NCBI Sequence Viewer
	XP_008770492	(Get FASTA)	NCBI Sequence Viewer
	XP_038953455	(Get FASTA)	NCBI Sequence Viewer
	XP_038953456	(Get FASTA)	NCBI Sequence Viewer
	XP_063133896	(Get FASTA)	NCBI Sequence Viewer
	XP_063133897	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAM94855	(Get FASTA)	NCBI Sequence Viewer
	EDL87310	(Get FASTA)	NCBI Sequence Viewer
	EDL87311	(Get FASTA)	NCBI Sequence Viewer
	EDL87312	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020921
	ENSRNOP00000020921.3
	ENSRNOP00000071610
	ENSRNOP00000071610.2
GenBank Protein	Q8K3V3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_689448 ⟸ NM_152242
- Peptide Label:	precursor
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), A0A0G2JSP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVQVLLQMVYFLLTLLFLVQGAHGASPREDFRFCGQRNQTRQSNLHYDQTSEPHIFVWNTDES LTIRAPFPAAPDIPYFFPEPRGLYHFCLYWSRHTGRLHLRYGKNDYLLSSRASNLLCYRKQEES LKQGAPLVATSVSSWQSPQNTSLPGAPSFIFSFHNAPHKVSHNASVNMCDLKKELQLLSKFLQH PHKASKRPSAAFISQQLQNLESKLTSVSFLGDTLSFEENRVNATVWKLPPTAGLEDLQIHSQQE EEQSEVQAYSVLLPRAVFQQTRGRRRDAAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNT KVTNLSDPVVLTFQHQPQPKNVTLQCVFWVEDPTSSSPGSWSSEGCETVSRDTQTSCLCNHLTY FAVLMVSSMEVEATHKHYLTLLSYVGCVISALACVFTIAAYLCTRRKSRDYTIKVHMNLLLAVF LLDVSFLLSEPVALMGSEAACRTSAMFLHFSLLACLSWMGLEGYNLYRLVVEVFGTYVPGYLLK LSTVGWGFPVFLVTLVALVDVNNYGPIILAVRRTPDHVIYPSMCWIRDSVVSYVTNLGLFSLVI LFNMAMLATMVVQILRLRPHSQKWPHVLTLLGLSLVLGLPWALVFFSFASGTFQLVIIYLFSIM TSFQGFLIFLWYWSMRFQAQGGPSPLKNNSDSAKLPISSGSTSSSRI hide sequence

RefSeq Acc Id:	XP_008770486 ⟸ XM_008772264
- Peptide Label:	isoform X2
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), F1LMW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPGIMAVQVLLQMVYFLLTLLFLVQGAHGASPREDFRFCGQRNQTRQSNLHYDQTSEPHIFVW NTDESLTIRAPFPAAPDIPYFFPEPRGLYHFCLYWSRHTGRLHLRYGKNDYLLSSRASNLLCYR KQEESLKQGAPLVATSVSSWQSPQNTSLPGAPSFIFSFHNAPHKVSHNASVNMCDLKKELQLLS KFLQHPHKASKRPSAAFISQQLQNLESKLTSVSFLGDTLSFEENRVNATVWKLPPTAGLEDLQI HSQQEEEQSEVQAYSVLLPRAVFQQTRGRRRDAAKRLLVVDFSSQALFQDKNSSQVLGEKVLGI VVQNTKVTNLSDPVVLTFQHQPQPKNVTLQCVFWVEDPTSSSPGSWSSEGCETVSRDTQTSCLC NHLTYFAVLMVSSMEVEATHKHYLTLLSYVGCVISALACVFTIAAYLCTRRKSRDYTIKVHMNL LLAVFLLDVSFLLSEPVALMGSEAACRTSAMFLHFSLLACLSWMGLEGYNLYRLVVEVFGTYVP GYLLKLSTVGWGFPVFLVTLVALVDVNNYGPIILAVRRTPDHVIYPSMCWIRDSVVSYVTNLGL FSLVILFNMAMLATMVVQILRLRPHSQKWPHVLTLLGLSLVLGLPWALVFFSFASGTFQLVIIY LFSIMTSFQGFLIFLWYWSMRFQAQGGPSPLKNNSDSAKLPISSGSTSSSRI hide sequence

RefSeq Acc Id:	XP_008770492 ⟸ XM_008772270
- Peptide Label:	isoform X3
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), A0A0G2JSP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVQVLLQMVYFLLTLLFLVQGAHGASPREDFRFCGQRNQTRQSNLHYDQTSEPHIFVWNTDES LTIRAPFPAAPDIPYFFPEPRGLYHFCLYWSRHTGRLHLRYGKNDYLLSSRASNLLCYRKQEES LKQGAPLVATSVSSWQSPQNTSLPGAPSFIFSFHNAPHKVSHNASVNMCDLKKELQLLSKFLQH PHKASKRPSAAFISQQLQNLESKLTSVSFLGDTLSFEENRVNATVWKLPPTAGLEDLQIHSQQE EEQSEVQAYSVLLPRAVFQQTRGRRRDAAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNT KVTNLSDPVVLTFQHQPQPKNVTLQCVFWVEDPTSSSPGSWSSEGCETVSRDTQTSCLCNHLTY FAVLMVSSMEVEATHKHYLTLLSYVGCVISALACVFTIAAYLCTRRKSRDYTIKVHMNLLLAVF LLDVSFLLSEPVALMGSEAACRTSAMFLHFSLLACLSWMGLEGYNLYRLVVEVFGTYVPGYLLK LSTVGWGFPVFLVTLVALVDVNNYGPIILAVRRTPDHVIYPSMCWIRDSVVSYVTNLGLFSLVI LFNMAMLATMVVQILRLRPHSQKWPHVLTLLGLSLVLGLPWALVFFSFASGTFQLVIIYLFSIM TSFQGFLIFLWYWSMRFQAQGGPSPLKNNSDSAKLPISSGSTSSSRI hide sequence

RefSeq Acc Id:	XP_008770489 ⟸ XM_008772267
- Peptide Label:	isoform X3
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), A0A0G2JSP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVQVLLQMVYFLLTLLFLVQGAHGASPREDFRFCGQRNQTRQSNLHYDQTSEPHIFVWNTDES LTIRAPFPAAPDIPYFFPEPRGLYHFCLYWSRHTGRLHLRYGKNDYLLSSRASNLLCYRKQEES LKQGAPLVATSVSSWQSPQNTSLPGAPSFIFSFHNAPHKVSHNASVNMCDLKKELQLLSKFLQH PHKASKRPSAAFISQQLQNLESKLTSVSFLGDTLSFEENRVNATVWKLPPTAGLEDLQIHSQQE EEQSEVQAYSVLLPRAVFQQTRGRRRDAAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNT KVTNLSDPVVLTFQHQPQPKNVTLQCVFWVEDPTSSSPGSWSSEGCETVSRDTQTSCLCNHLTY FAVLMVSSMEVEATHKHYLTLLSYVGCVISALACVFTIAAYLCTRRKSRDYTIKVHMNLLLAVF LLDVSFLLSEPVALMGSEAACRTSAMFLHFSLLACLSWMGLEGYNLYRLVVEVFGTYVPGYLLK LSTVGWGFPVFLVTLVALVDVNNYGPIILAVRRTPDHVIYPSMCWIRDSVVSYVTNLGLFSLVI LFNMAMLATMVVQILRLRPHSQKWPHVLTLLGLSLVLGLPWALVFFSFASGTFQLVIIYLFSIM TSFQGFLIFLWYWSMRFQAQGGPSPLKNNSDSAKLPISSGSTSSSRI hide sequence

RefSeq Acc Id:

ENSRNOP00000020921 ⟸ ENSRNOT00000020921

RefSeq Acc Id:

ENSRNOP00000072630 ⟸ ENSRNOT00000081223

RefSeq Acc Id:

ENSRNOP00000071610 ⟸ ENSRNOT00000088048

RefSeq Acc Id:	XP_038953455 ⟸ XM_039097527
- Peptide Label:	isoform X3
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), A0A0G2JSP0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953456 ⟸ XM_039097528
- Peptide Label:	isoform X3
- UniProtKB:	Q8K3V3 (UniProtKB/Swiss-Prot), A0A0G2JSP0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133896 ⟸ XM_063277826
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133897 ⟸ XM_063277827
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JSP0 (UniProtKB/TrEMBL)

Protein Domains

G-protein coupled receptors family 2 profile GPS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8K3V3-F1-model_v2	AlphaFold	Q8K3V3	1-687	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700935

Promoter ID:

EPDNEW_R11459

Type:

multiple initiation site

Name:

Adgrg1_1

Description:

adhesion G protein-coupled receptor G1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	10,460,480 - 10,460,540	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628617	AgrOrtholog
BioCyc Gene	G2FUF-6521	BioCyc
Ensembl Genes	ENSRNOG00000014963	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020921	ENTREZGENE
	ENSRNOT00000020921.7	UniProtKB/TrEMBL
	ENSRNOT00000088048.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.220.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	GAIN_A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GAIN_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_secretin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPR1/GPR3/GPR5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:260326	UniProtKB/TrEMBL
NCBI Gene	260326	ENTREZGENE
PANTHER	ADHESION G-PROTEIN COUPLED RECEPTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ADHESION G-PROTEIN COUPLED RECEPTOR G1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GAIN_A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Adgrg1	PhenoGen
PRINTS	GPCRSECRETIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPR56ORPHANR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F2_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014963	RatGTEx
SMART	GPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot
UniProt	A0A0G2JSP0	ENTREZGENE, UniProtKB/TrEMBL
	AGRG1_RAT	UniProtKB/Swiss-Prot
	F1LMW3	ENTREZGENE, UniProtKB/TrEMBL
	Q8K3V3	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Adgrg1	adhesion G protein-coupled receptor G1	LOC102554158	uncharacterized LOC102554158	Data merged from RGD:7523177	737654	PROVISIONAL
2015-03-16	Adgrg1	adhesion G protein-coupled receptor G1	Gpr56	G protein-coupled receptor 56	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-17	LOC102554158	uncharacterized LOC102554158			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Gpr56	G protein-coupled receptor 56			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Gpr56	G protein-coupled receptor 56			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in heart and brain, with high level of expression in the hippocampus and hypothalamic nuclei	708336
gene_homology	has similarity to class B secretin-like G-protein coupled receptors	708336

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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