Arl5a (ADP-ribosylation factor like GTPase 5A)

Gene: Arl5a (ADP-ribosylation factor like GTPase 5A) Rattus norvegicus

Analyze

Symbol:

Arl5a

Name:

ADP-ribosylation factor like GTPase 5A

RGD ID:

621327

Description:

Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5A (ADP ribosylation factor like GTPase 5A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ADP-ribosylation factor-like 5; ADP-ribosylation factor-like 5A; ADP-ribosylation factor-like protein 5A; Arl5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARL5A (ADP ribosylation factor like GTPase 5A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arl5a (ADP-ribosylation factor-like 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arl5a (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARL5A (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARL5A (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arl5a (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARL5A (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARL5A (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arl5a (ADP ribosylation factor like GTPase 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ARL5B (ADP ribosylation factor like GTPase 5B)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ARL5A (ADP ribosylation factor like GTPase 5A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arl5a (ADP-ribosylation factor-like 5A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arl5a (ADP-ribosylation factor-like 5A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Arl5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	arl-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arl5a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	57,287,599 - 57,312,488 (-)	NCBI		GRCr8
mRatBN7.2	3	36,878,461 - 36,903,362 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	36,880,712 - 36,903,211 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	40,267,972 - 40,288,877 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	48,852,750 - 48,873,658 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	46,637,309 - 46,658,237 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	37,922,544 - 37,947,434 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,924,793 - 37,947,283 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	43,026,193 - 43,047,118 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	33,905,755 - 33,926,681 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	33,800,410 - 33,822,902 (-)	NCBI
Celera	3	35,024,333 - 35,045,257 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

idiopathic generalized epilepsy (ISO)

nemaline myopathy 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

calciol (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

haloperidol (EXP)

hydrogen peroxide (ISO)

isobutanol (ISO)

lead(0) (ISO)

maneb (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

miconazole (ISO)

N-nitrosodiethylamine (ISO)

nefazodone (EXP)

ochratoxin A (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propiconazole (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trimellitic anhydride (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IBA)

protein localization to Golgi membrane (IBA,ISO)

vesicle-mediated transport (IBA)

Cellular Component

trans-Golgi network (IBA)

Molecular Function

GTP binding (TAS)

GTPase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cloning of a novel member (ARL5) of the ARF-family of Ras-related GTPases.	Breiner M, etal., Biochim Biophys Acta 1996 Jul 31;1308(1):1-6.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:25795912

Genomics

Comparative Map Data

Arl5a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	57,287,599 - 57,312,488 (-)	NCBI		GRCr8
mRatBN7.2	3	36,878,461 - 36,903,362 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	36,880,712 - 36,903,211 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	40,267,972 - 40,288,877 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	48,852,750 - 48,873,658 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	46,637,309 - 46,658,237 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	37,922,544 - 37,947,434 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,924,793 - 37,947,283 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	43,026,193 - 43,047,118 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	33,905,755 - 33,926,681 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	33,800,410 - 33,822,902 (-)	NCBI
Celera	3	35,024,333 - 35,045,257 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

ARL5A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	151,798,797 - 151,828,421 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	151,788,984 - 151,828,492 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	152,655,311 - 152,684,935 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	152,365,726 - 152,393,255 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	152,484,611 - 152,510,503	NCBI
Celera	2	146,272,160 - 146,299,690 (-)	NCBI		Celera
Cytogenetic Map	2	q23.3	NCBI
HuRef	2	144,543,720 - 144,571,242 (-)	NCBI		HuRef
CHM1_1	2	152,663,024 - 152,690,587 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	152,250,228 - 152,279,855 (-)	NCBI		T2T-CHM13v2.0

Arl5a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	52,287,961 - 52,314,886 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	52,287,963 - 52,314,913 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	52,397,949 - 52,424,874 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	52,397,951 - 52,424,901 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	52,253,471 - 52,280,394 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	52,219,960 - 52,246,883 (-)	NCBI		MGSCv36	mm8
Celera	2	54,127,859 - 54,154,901 (-)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	29.98	NCBI

Arl5a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	17,329,450 - 17,361,646 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	17,329,450 - 17,341,836 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARL5A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	54,470,488 - 54,511,667 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	54,485,468 - 54,526,631 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	39,092,366 - 39,133,505 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	156,337,533 - 156,368,974 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	156,344,048 - 156,368,974 (-)	Ensembl	panpan1.1		panPan2

ARL5A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	52,949,533 - 52,973,408 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	52,947,922 - 52,973,406 (-)	NCBI	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	19	52,947,922 - 52,973,406 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	28,675,656 - 28,708,540 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	54,460,665 - 54,493,585 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	54,467,067 - 54,493,507 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	53,175,806 - 53,208,574 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	53,245,457 - 53,278,872 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	54,710,455 - 54,743,297 (-)	NCBI		UU_Cfam_GSD_1.0

Arl5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	115,844,085 - 115,867,473 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	25,750,247 - 25,773,693 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	25,750,247 - 25,773,693 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL5A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	467,995 - 498,883 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	467,925 - 498,889 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARL5A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	37,206,303 - 37,236,255 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	162,310,303 - 162,342,420 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl5a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624866	5,291,158 - 5,319,841 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624866	5,291,025 - 5,319,841 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arl5a
142 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	485
Count of miRNA genes:	211
Interacting mature miRNAs:	267
Transcripts:	ENSRNOT00000009181
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	25013911	38192233	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	27494621	44188411	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	27494621	50302886	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	27494621	50302886	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	27494621	50302886	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat

Markers in Region

RH141305

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	36,882,480 - 36,882,681 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	37,926,562 - 37,926,762	NCBI	Rnor6.0
Rnor_5.0	3	43,026,246 - 43,026,446	UniSTS	Rnor5.0
RGSC_v3.4	3	33,905,808 - 33,906,008	UniSTS	RGSC3.4
Celera	3	35,024,386 - 35,024,586	UniSTS
RH 3.4 Map	3	446.82	UniSTS
Cytogenetic Map	3	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	10	74	35	34	11	8
Low		1						1			7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X78604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000009181 ⟹ ENSRNOP00000009181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,880,712 - 36,903,211 (-)	Ensembl
Rnor_6.0 Ensembl	3	37,924,793 - 37,947,283 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	37,926,794 - 37,946,999 (-)	Ensembl

RefSeq Acc Id:

NM_053979 ⟹ NP_446431

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,291,562 - 57,312,488 (-)	NCBI
mRatBN7.2	3	36,882,428 - 36,903,362 (-)	NCBI
Rnor_6.0	3	37,926,509 - 37,947,434 (-)	NCBI
Rnor_5.0	3	43,026,193 - 43,047,118 (-)	NCBI
RGSC_v3.4	3	33,905,755 - 33,926,681 (-)	RGD
Celera	3	35,024,333 - 35,045,257 (-)	RGD

Sequence:

show sequence

CCGCGAGCCAGGCGAGCGCCGCGGCGGTAGCGGCGGGGCCTCGCGCGTGGCTAGGTGGCCTGGG
CTGCGGCCTCCCCGCGGGTCCCTGGAAGCGGGCGCGCGGCCGGCGCGGGAGCAGAGGCGGAGGC
CCCGGCGCGTCCTTCTGCCCCGCAGCCTGAGCCCGGGCGGCTGGAGGGCTCCGCTGCCCGAGGA
TGGGAATTCTCTTCACCCGGATCTGGAGACTGTTCAATCACCAGGAGCACAAAGTTATTATTGT
TGGGCTGGACAATGCCGGGAAGACTACCATCCTTTACCAGTTTTCCATGAATGAAGTTGTACAT
ACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACACGTTTCCTGATGT
GGGATATTGGTGGCCAAGAATCCCTTCGTTCTTCCTGGAACACTTATTATACTAACACAGAGTT
TGTAATAGTTGTGGTGGACAGCACAGACAGAGAAAGAATTTCTGTAACTAGAGAAGAGCTCTAC
AAAATGCTAGCCCACGAGGACCTAAGGAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGATG
TTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTCACTTCTATAAAAGACCA
CCAATGGCATATCCAAGCATGCTGTGCTCTCACTGGCGAGGGGTTATGCCAAGGACTTGAATGG
ATGATGTCACGGCTGAAGATCAGATGATCTCTTCTGACCCCTTCTCATGGACTCTGTATAAACA
AAGTGCTGGACTTTATCTGAAAGCTGCAAAAAATGGTTTAGATATATTTATAATAAACTGACTT
AAGAGTTTTCTACAAGAAGAAAATTAAGACCATTTATTTGAAAACAGATGAAATGTCACCACCT
CGTTTGCTCTCTCATTCCTTCCAAACCTGTGACTGGTATTTTCTCATGATGAATCCTCTCCGGA
CATGGGAGAGTTCTAATGAATACAAGGGAGAGGAAGACATTTGAACTTGGAGCTTTATTTCCTC
GACGAGCCCACCCTGCCCCAAGTGAATGTTCCCTTTTCATTACATTGAATCAAATACGGATCAG
CACGGATACTGTTTCCAGTTTTTAAAAATGTAATAATATTATGGAAAGTATTTTACTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008761696 ⟹ XP_008759918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,287,599 - 57,312,188 (-)	NCBI
mRatBN7.2	3	36,878,461 - 36,903,053 (-)	NCBI
Rnor_6.0	3	37,922,544 - 37,947,172 (-)	NCBI

Sequence:

show sequence

CCCGGCCCTTGTCGGGCGGAGGGGGTCGCCTTTGTCTCTCGGGAGCTGGGGAGAGCTTCCTCCC
GCCATACACCCATTGCTCCGATTTGATCGCGAGCGCGAAAGGTGTCCTGCTCCACGCCGGGGGC
CCAACGCGCGGCCTGGCCTGCCTCCATCCGCGTCGCCGGCCGGCAGTTGTGTTTGGGCCGCACT
GACAACAGCTGGGGTTCTAGGGTGAAGACCGAGGGCCCTGGCCCTAGAGGCGCCACCGAGCCCA
CAGTTTGCAGAATGCGGAAAACTGGAACTAGTGCTGGACTCGTCTGAGCACAAAGTTATTATTG
TTGGGCTGGACAATGCCGGGAAGACTACCATCCTTTACCAGTTTTCCATGAATGAAGTTGTACA
TACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACACGTTTCCTGATG
TGGGATATTGGTGGCCAAGAATCCCTTCGTTCTTCCTGGAACACTTATTATACTAACACAGAGT
TTGTAATAGTTGTGGTGGACAGCACAGACAGAGAAAGAATTTCTGTAACTAGAGAAGAGCTCTA
CAAAATGCTAGCCCACGAGGACCTAAGGAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGAT
GTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTCACTTCTATAAAAGACC
ACCAATGGCATATCCAAGCATGCTGTGCTCTCACTGGCGAGGGGTTATGCCAAGGACTTGAATG
GATGATGTCACGGCTGAAGATCAGATGATCTCTTCTGACCCCTTCTCATGGACTCTGTATAAAC
AAAGTGCTGGACTTTATCTGAAAGCTGCAAAAAATGGTTTAGATATATTTATAATAAACTGACT
TAAGAGTTTTCTACAAGAAGAAAATTAAGACCATTTATTTGAAAACAGATGAAATGTCACCACC
TCGTTTGCTCTCTCATTCCTTCCAAACCTGTGACTGGTATTTTCTCATGATGAATCCTCTCCGG
ACATGGGAGAGTTCTAATGAATACAAGGGAGAGGAAGACATTTGAACTTGGAGCTTTATTTCCT
CGACGAGCCCACCCTGCCCCAAGTGAATGTTCCCTTTTCATTACATTGAATCAAATACGGATCA
GCACGGATACTGTTTCCAGTTTTTAAAAATGTAATAATATTATGGAAAGTATTTTACTTAAAGT
TGAATATGTATTGTGTATATACCTCAAGTTCAGGTTAATGGCTTTGATTTATTTGTGTTCTAAA
GGAAAGCAAATAACACAAGTTAATGACGTTATTTTCCTGATGTCACTGAGTACCATCTTGGTGT
TAATTGTCACTGTTTAGTTTACCCTCTGTTCTCTGTATTGTTCTAACAAGCCAACCCCAGCCCA
GAATCGGTAAGCTGCTCCTTAAAAATGAAACGGGAGAAAGCTTGACATTGTGTACCTATTTTTG
TTGCTCAGTCATACAGATGGAAATCCATAACGCAAGTGGGTAGAGTCTGCTGGACTCCTGGCCT
GGTGTGGCCGGGCAGAATTACTCGAGAAGCAGTTGTCAGACTTTCCCTTCTGCTGGTCCTAATT
CAGCCAATTCAGCTACTAATCGGTCATTCATAAATTGTGATTAAAATGATCAGGTAATTTTTAA
TTGAAAATCATGTTGTGAAATATATCTACCCAAAGAGGTAACATCCTATAAATAGTAATAATTA
ATTTAGCTGCAGCCTTTTCAGGTATTAAATTATATGACAAACAGTTAAAATGAATTTAAGAGTA
AACATAAGGCATAGTTTTCAGTGAACATTAATAATTTCTCAATTTGCAGATTAGCATCTGCAAA
GGTATCTTCTTCCATTGCATAAAATGCCTTGTTTAATAGTTAACTAATCAAATATTCTGAATGA
CTTCAAAAATTTGATTGAAAATTTGAGATATCACATTATTTGTACTAGGATTTGACCTAAAACA
CCTTTTATATTTGTTAACCTTTCTTAAATTTAGTTAAAATTTGAAGTATTTCTGTCGTAATTAT
AAACAAAATTATTTTGTGTTTTAACATATTCTTGGTGACTCTTTATACTTTTTGTGCCCTGAAA
ATTTGAAGGTTACTCCAAACTGTCAAGATTTAGGATATTCAAGAAAAGATTTAACTAGTTTTAG
TGTCAGACTTTAAAATTTCCTAAGGAATTTGGTAAGAAATAGAAGTCCACTCTATAAGCATTGA
GGAAACTTTGAAAAACCTTTAAGTAAATGTAAGACTCTTAATGACTAAACCCATCGGAGTGGAT
GAGTGTTCCCCTGGAGGCTTGTGTTTGAGACCTGTGCTGTAAGCCTCCCACTTGACCTTCAGCG
TAATGTTTCCCACCTGCTCAGAGTGTCAGCACTCGTCACTAGGCTTTCCAGGGCTAAGTCCTTC
CTGTTCACATGTTCTCACACTTTTTCAAATCATGAGGCTTTCTCCTGTATAGTAAAAATCCCCT
TAAAGACTCAAATCTACGTCGTAGTTTTGTCAGAGACCAATAGTCCATCGAGCCCCCACCTACC
CCAGATCTGCAGCTTCTTAGCTTTTATCTGAATAGTCCTTGCACAGTTGCTTGCCTCTCTGTCA
CATCAGTTCAGCACATAGCAGCACATCCTGGTGTTGCCGAGGTATTGGCTAGAATTTATTCTTA
ATTAGATGTTTAAAGCATTTACTCCACTGTTAAAGTTGTCTTAGTGTAGTCAGGTATTGACATG
ACATAAGAAAGCATGAAACTACCACATTTACAAAATATGAGGGATTTGGGGTTTGGTTTTTTTT
GTTTGTTTGGTTGGTTTTTTTTTTTTTTGGTTTTTAACTATTTTAGACTCAAATAATATCATAC
CTGTGTACTTGTACATAAAAACAAAATTATTACTGAGTAAAAAGATTAATATATGAACTATCAC
AGCTGTCGTTAACAGTATTAATGAGGTCTGAATCCGGAGGGTCCCCTGATTACCATGCTGACAG
TTCACATGTCATAGGGCAGAACTCAGCAAGTCCTGTGGTTTCAGGTGTTAATAAGTAAACGTCT
CATCCAACCTCACTGTGCTCAGCTTTGAAAAGAACAAAGATTATACCTCTGTACATGTGGGTAG
ATTTAAAGTGTCCTGTTTTGATACTAATTTTGAAAGTTGTTTATCTTCTCTTGATATCTTGGTA
AAACTGGCCGTAAGAGAAACCATTTGAATATATTTGATTTTGTCATAGCATTTATAAAATGTAT
GTTTCCCATTATATTGAGAGTTTTATTTTAAAAATCCCCTTATGTTTCTAGCACACCTTGGCCA
TCACAGTAGACAAAGAATTCAGAGAAGGCGAGTGGGTTAGGCTGGGGGAATGAGTATTCATTTT
TTTCTCCTGACATTGTCTCTTAAGAAGAAAGTGCTGGCTGGCATCTTTAATGCGGGTTGTGAGC
CTAATTACATAAGCATGAGCCAGAAGGGAGAGGACTTTGCTCCCTGGCCTTTAAGAAGTGCCTC
GTAGGTAATCATGGAAGTCACAGGTAAGTGCAGGAGCTTGACCGTAGGCAAGAGGTCTCTAAGG
TGTTCTTTTCCTTTGTCTGAGTGTATAGTATTACGATGCCTAGAAGGGGGGCGCTGTTGGCCCT
CCCTTACAGGCACTTTCTATTTCTTGCTGTAACTACAGCAATCACATACAGTACAGACAACCTC
AATCTGTTTATATTAGTGTGTAAATAGAAAAACTGTAAACAGCTGTCTAGTCTTCTCCGCAGGC
ATTTTGGGAATGCTTCTATACTCTGTTCTACTTTGTTAATGGGGAATAACAGCACATCCTAGAT
CACCTGTGAACTTTGGGGTCTTCTGATTGCCCTTGGTATCCTGATATTCTCATTTCCAAGATGA
GGTAGAGACAGGGTTTCCTTGCATAACAGATTTGAGCACCTGCGTTCTGCAAACACAATCTCAA
GAGCAGTTCCATAGCTCAGCTAGCCATTGCTGCCCCGATGCTTGCCCTCCACCAACGGAGGTCG
CCTCTGCAGAGTCTACACTTTGCCCATAACCCTCATTCCCCAGACCTAGGCTTTGAGTAACTGC
TCTGATTCTGTCCGCCCACCCACCAGTGACTCACCACTCTGCACACTCCCATCTTCAGAGATGC
GGAGTCTCTCAGGACAGCAGCTTCAGATCATGGTATACAGATACCAGTAGAAGAATCGGACATT
GTACTGCCCTTAGCACCTTAACTCTACTTAACAATCACAACTAGATTCAGAAATACAAGAAAGA
TATATAGACTATGTCAGGTCCTTAAGTTAGGAATTAGGACCAAAGGCTATTAACTTACATTCAC
ATTATCCTCATGTAGCCAAGAGTGGTGATGTTTTGGAGAATACCAGTCCAGCCAGGCTAACATG
AAGATGACAGAACTGTGGTGTTGAGCCTGAAGACATCCTAAAATGGTTTCCCTTGCTCCATTTT
TCTTCACATTTGCTTACATAGCAAAGACCAGCATTAAATGTCTAAAGGAATTTTTAATTTGAGA
GCTAGTATTACAAAATAAACCTGCTAAAACGGGCTTTAAAAGACAGCAAAATAAGCCATATGTA
GTGGTGTTAAAACTAATCCCAGCACTCAGGAAGCTGAGACAGGAGACTCGCTGGGCATACAAGG
TCAACCTGGGATAAATAGTATCAGCCACCATGACTACAAAGGGAAAGACTGTCACAAAGGAAAA
GAAGAAGGAAGGAAAAGCCAGCAGTCAACCATCATGTGTTTCTGTAGATTCAGATGTGATAGAT
TCAGGATGCTTCTTATAAAACATCTGTGTCATGTTCCTTAAAGCAGGTGCGCTCCTTTAAGACC
ATGACAGTAGGCTAAGGGAAAGAGTGAAATCCAACACTCAAAGTGAGAGCTTATATTTAACCCT
AAAGTGGATTGAAATCGGGGAGAGATGTAATACAGGATACAGGTGGGCTAATTATGCAATATTT
CTTCTTTCTAATTCTCTAACTCTGTACTGTTCCTAAAAATGGATGAGTGAGTCTCTGTGGTGTT
GCCTGCTCAATGTGCATATCCTTGGTAGACATTTCTCATAGTGTGTACTTAAAAAGTGCCTGAC
ATTGATTTGTGTTGATTTCTAAGTCCATGTAATAAACGATACATGTTTTCTATGATAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446431	(Get FASTA)	NCBI Sequence Viewer
	XP_008759918	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97294	(Get FASTA)	NCBI Sequence Viewer
	CAA55338	(Get FASTA)	NCBI Sequence Viewer
	EDM00435	(Get FASTA)	NCBI Sequence Viewer
	EDM00436	(Get FASTA)	NCBI Sequence Viewer
	EDM00437	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009181
	ENSRNOP00000009181.1
	ENSRNOP00055000781
	ENSRNOP00060026293
	ENSRNOP00065009866
GenBank Protein	P51646	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_446431 ⟸ NM_053979
- UniProtKB:	Q4V8N2 (UniProtKB/Swiss-Prot), P51646 (UniProtKB/Swiss-Prot), A6JF24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLM WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR hide sequence

RefSeq Acc Id:	XP_008759918 ⟸ XM_008761696
- Peptide Label:	isoform X1
- UniProtKB:	A6JF25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL CQGLEWMMSRLKIR hide sequence

RefSeq Acc Id:

ENSRNOP00000009181 ⟸ ENSRNOT00000009181

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P51646-F1-model_v2	AlphaFold	P51646	1-179	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621327	AgrOrtholog
BioCyc Gene	G2FUF-49728	BioCyc
Ensembl Genes	ENSRNOG00000006839	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055000588	UniProtKB/Swiss-Prot
	ENSRNOG00060018741	UniProtKB/Swiss-Prot
	ENSRNOG00065008422	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009181	ENTREZGENE
	ENSRNOT00000009181.3	UniProtKB/Swiss-Prot
	ENSRNOT00055001007	UniProtKB/Swiss-Prot
	ENSRNOT00060032282	UniProtKB/Swiss-Prot
	ENSRNOT00065013338	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7458249	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:117050	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:114279	IMAGE-MGC_LOAD
NCBI Gene	117050	ENTREZGENE
PANTHER	ADP RIBOSYLATION FACTOR-RELATED	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 5A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11711	UniProtKB/Swiss-Prot
Pfam	Arf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Arl5a	PhenoGen
PRINTS	SAR1GTPBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006839	RatGTEx
	ENSRNOG00055000588	RatGTEx
	ENSRNOG00060018741	RatGTEx
	ENSRNOG00065008422	RatGTEx
SMART	ARF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	P-loop containing nucleoside triphosphate hydrolases	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6JF23_RAT	UniProtKB/TrEMBL
	A6JF24	ENTREZGENE, UniProtKB/TrEMBL
	A6JF25	ENTREZGENE, UniProtKB/TrEMBL
	ARL5A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q4V8N2	ENTREZGENE
UniProt Secondary	Q4V8N2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-19	Arl5a	ADP-ribosylation factor like GTPase 5A	Arl5a	ADP-ribosylation factor-like 5A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Arl5a	ADP-ribosylation factor-like 5A	Arl5	ADP-ribosylation factor-like 5	Symbol and Name updated	1299863	APPROVED
2005-01-20	Arl5	ADP-ribosylation factor-like 5			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Arl5	ADP-ribosylation factor-like 5			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	ubiquitously expressed; enriched in brain, intestine, and thymus	724591

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar