Atg4d (autophagy related 4D, cysteine peptidase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atg4d (autophagy related 4D, cysteine peptidase) Rattus norvegicus
Analyze
Symbol: Atg4d
Name: autophagy related 4D, cysteine peptidase
RGD ID: 1596392
Description: Predicted to enable cysteine-type endopeptidase activity; cysteine-type exopeptidase activity; and protein-phosphatidylethanolamide deconjugating activity. Predicted to be involved in macroautophagy and protein processing. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be active in cytoplasm. Orthologous to human ATG4D (autophagy related 4D cysteine peptidase); PARTICIPATES IN autophagy pathway; INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATG4 autophagy related 4 homolog D; ATG4 autophagy related 4 homolog D (S. cerevisiae); autophagy-related 4D; autophagy-related 4D (S. cerevisiae); cysteine protease ATG4D; LOC686505; similar to APG4-D protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,083,902 - 28,093,491 (+)NCBIGRCr8
mRatBN7.2819,807,733 - 19,817,321 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,807,766 - 19,817,321 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,827,592 - 23,837,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,125,441 - 22,134,991 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,037,455 - 20,047,010 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,291,445 - 22,301,331 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,291,445 - 22,301,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,344,081 - 22,353,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera821,199,310 - 21,208,865 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
mitochondrion  (IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
autophagy pathway  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
4. Hepatic interferon regulatory factor 8 expression mediates liver ischemia/reperfusion injury in mice. Shi G, etal., Biochem Pharmacol. 2021 Oct;192:114728. doi: 10.1016/j.bcp.2021.114728. Epub 2021 Aug 13.
5. LC3 conjugation system in mammalian autophagy. Tanida I, etal., Int J Biochem Cell Biol. 2004 Dec;36(12):2503-18.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:21177865  


Genomics

Comparative Map Data
Atg4d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,083,902 - 28,093,491 (+)NCBIGRCr8
mRatBN7.2819,807,733 - 19,817,321 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,807,766 - 19,817,321 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,827,592 - 23,837,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,125,441 - 22,134,991 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,037,455 - 20,047,010 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,291,445 - 22,301,331 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,291,445 - 22,301,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,344,081 - 22,353,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera821,199,310 - 21,208,865 (+)NCBICelera
Cytogenetic Map8q13NCBI
ATG4D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,543,904 - 10,553,418 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,543,895 - 10,553,418 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,654,580 - 10,664,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,515,647 - 10,525,094 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,515,646 - 10,525,093NCBI
Celera1910,549,363 - 10,558,810 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,232,683 - 10,242,060 (+)NCBIHuRef
CHM1_11910,655,287 - 10,664,815 (+)NCBICHM1_1
T2T-CHM13v2.01910,664,918 - 10,679,876 (+)NCBIT2T-CHM13v2.0
Atg4d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,176,496 - 21,186,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,176,589 - 21,189,068 (+)EnsemblGRCm39 Ensembl
GRCm38921,265,205 - 21,274,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,265,293 - 21,277,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,069,743 - 21,078,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,015,701 - 21,024,770 (+)NCBIMGSCv36mm8
Celera918,534,424 - 18,543,493 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.75NCBI
Atg4d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,739,982 - 1,746,362 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,739,982 - 1,746,362 (+)NCBIChiLan1.0ChiLan1.0
ATG4D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,462,360 - 15,471,847 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,460,973 - 14,470,447 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,095,768 - 10,105,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,758,544 - 10,767,712 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,758,544 - 10,767,712 (+)Ensemblpanpan1.1panPan2
ATG4D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,618,458 - 50,623,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,618,459 - 50,624,179 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,490,720 - 50,495,909 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,141,597 - 51,146,788 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,141,586 - 51,146,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,348,430 - 50,353,618 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,776,503 - 50,781,692 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,017,552 - 51,022,743 (-)NCBIUU_Cfam_GSD_1.0
Atg4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,513,140 - 209,531,379 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659823,172 - 830,521 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659823,318 - 830,642 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG4D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,320,331 - 69,328,519 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,320,313 - 69,328,522 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,706,013 - 69,714,211 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG4D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,555,792 - 9,565,295 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,555,780 - 9,568,814 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,424,399 - 10,434,629 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg4d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,617,773 - 2,624,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,617,853 - 2,624,756 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atg4d
44 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000075174
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat

Markers in Region
RH136985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,817,106 - 19,817,287 (+)MAPPERmRatBN7.2
Rnor_6.0822,301,117 - 22,301,297NCBIRnor6.0
Rnor_5.0822,353,753 - 22,353,933UniSTSRnor5.0
Celera821,208,651 - 21,208,831UniSTS
RH 3.4 Map8180.05UniSTS
RH140242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,809,947 - 19,810,155 (+)MAPPERmRatBN7.2
Rnor_6.0822,293,627 - 22,293,834NCBIRnor6.0
Rnor_5.0822,346,263 - 22,346,470UniSTSRnor5.0
Celera821,201,492 - 21,201,699UniSTS
RH 3.4 Map8182.7UniSTS
AI228232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,817,106 - 19,817,309 (+)MAPPERmRatBN7.2
Rnor_6.0822,301,117 - 22,301,319NCBIRnor6.0
Rnor_5.0822,353,753 - 22,353,955UniSTSRnor5.0
Celera821,208,651 - 21,208,853UniSTS
RH 3.4 Map8205.59UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075174   ⟹   ENSRNOP00000064764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,807,766 - 19,817,321 (+)Ensembl
Rnor_6.0 Ensembl822,291,445 - 22,301,331 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083194   ⟹   ENSRNOP00000068960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,809,174 - 19,817,321 (+)Ensembl
Rnor_6.0 Ensembl822,291,463 - 22,301,325 (+)Ensembl
RefSeq Acc Id: NM_001101013   ⟹   NP_001094483
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,083,936 - 28,093,491 (+)NCBI
mRatBN7.2819,807,766 - 19,817,321 (+)NCBI
Rnor_6.0822,291,445 - 22,301,331 (+)NCBI
Rnor_5.0822,344,081 - 22,353,967 (+)NCBI
Celera821,199,310 - 21,208,865 (+)RGD
Sequence:
RefSeq Acc Id: XM_039082159   ⟹   XP_038938087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,085,555 - 28,093,486 (+)NCBI
mRatBN7.2819,809,387 - 19,817,321 (+)NCBI
RefSeq Acc Id: XR_005487922
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,083,902 - 28,092,302 (+)NCBI
mRatBN7.2819,807,733 - 19,816,132 (+)NCBI
RefSeq Acc Id: XR_005487923
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,083,902 - 28,092,302 (+)NCBI
mRatBN7.2819,807,733 - 19,816,132 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001094483 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938087 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07651 (Get FASTA)   NCBI Sequence Viewer  
  AAI68141 (Get FASTA)   NCBI Sequence Viewer  
  EDL78309 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064764
  ENSRNOP00000064764.1
  ENSRNOP00000068960.2
Reference Protein Sequences
RefSeq Acc Id: NP_001094483   ⟸   NM_001101013
- UniProtKB: B4F756 (UniProtKB/TrEMBL),   M0R5T6 (UniProtKB/TrEMBL),   A6JNQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064764   ⟸   ENSRNOT00000075174
RefSeq Acc Id: ENSRNOP00000068960   ⟸   ENSRNOT00000083194
RefSeq Acc Id: XP_038938087   ⟸   XM_039082159
- Peptide Label: isoform X1
- UniProtKB: A6JNQ8 (UniProtKB/TrEMBL)
Protein Domains
Peptidase C54 catalytic

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R5T6-F1-model_v2 AlphaFold M0R5T6 1-473 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695777
Promoter ID:EPDNEW_R6301
Type:multiple initiation site
Name:Atg4d_1
Description:autophagy related 4D, cysteine peptidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0822,291,456 - 22,291,516EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596392 AgrOrtholog
BioCyc Gene G2FUF-31430 BioCyc
Ensembl Genes ENSRNOG00000047625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075174 ENTREZGENE
  ENSRNOT00000075174.3 UniProtKB/TrEMBL
  ENSRNOT00000083194.2 UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C54 UniProtKB/TrEMBL
  Peptidase_C54_cat UniProtKB/TrEMBL
KEGG Report rno:686505 UniProtKB/TrEMBL
NCBI Gene 686505 ENTREZGENE
PANTHER CYSTEINE PROTEASE ATG4D UniProtKB/TrEMBL
  PTHR22624 UniProtKB/TrEMBL
Pfam Peptidase_C54 UniProtKB/TrEMBL
PhenoGen Atg4d PhenoGen
RatGTEx ENSRNOG00000047625 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A0G2JU44_RAT UniProtKB/TrEMBL
  A6JNQ6 ENTREZGENE, UniProtKB/TrEMBL
  A6JNQ8 ENTREZGENE, UniProtKB/TrEMBL
  B4F756 ENTREZGENE, UniProtKB/TrEMBL
  M0R5T6 ENTREZGENE, UniProtKB/TrEMBL
  Q3B7D7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-07 Atg4d  autophagy related 4D, cysteine peptidase  Atg4d  ATG4 autophagy related 4 homolog D (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-03 Atg4d  autophagy-related 4D (S. cerevisiae)  LOC686505  similar to APG4-D protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-03 Atg4d  ATG4 autophagy related 4 homolog D (S. cerevisiae)  Atg4d  autophagy-related 4D (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686505  similar to APG4-D protein      Symbol and Name status set to provisional 70820 PROVISIONAL