Ndufa13-ps1 (NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1) - Rat Genome Database

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Gene: Ndufa13-ps1 (NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ndufa13-ps1 (Ensembl: AABR07056686.1)
Name: NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1 (Ensembl:NADH:ubiquinone oxidoreductase subunit A13, pseudo 1)
RGD ID: 1565358
Description: Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 28 and thyroid gland Hurthle cell carcinoma. Orthologous to human NDUFA13 (NADH:ubiquinone oxidoreductase subunit A13); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC314759; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like; NADH:ubiquinone oxidoreductase subunit A13; Ndufa13; RGD1565358; similar to genes associated with retinoid-IFN-induced mortality 19
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Ndufa13  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8732,257,003 - 32,257,472 (+)NCBIGRCr8
mRatBN7.2730,370,156 - 30,370,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,370,154 - 30,370,588 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0736,826,357 - 36,826,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0736,876,603 - 36,877,083 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4732,937,677 - 32,938,111 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera727,440,592 - 27,441,072 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23271731   PMID:23386605  


Genomics

Variants

.
Variants in Ndufa13-ps1
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:69
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000027980
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029783   ⟹   ENSRNOP00000034694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl730,370,154 - 30,370,588 (+)Ensembl
Rnor_6.0 Ensembl736,826,360 - 36,826,788 (+)Ensembl
RefSeq Acc Id: XM_039080581   ⟹   XP_038936509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2730,370,139 - 30,370,634 (+)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZC5-F1-model_v2 AlphaFold F1LZC5 1-143 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565358 AgrOrtholog
BioCyc Gene G2FUF-34329 BioCyc
Ensembl Genes ENSRNOG00000021688 Ensembl, ENTREZGENE
NCBI Gene 314759 ENTREZGENE
PhenoGen Ndufa13-ps1 PhenoGen
RatGTEx ENSRNOG00000021688 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-03 Ndufa13-ps1  NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1  Ndufa13  NADH:ubiquinone oxidoreductase subunit A13  Name and Symbol changed 629549 APPROVED
2015-11-30 Ndufa13  NADH:ubiquinone oxidoreductase subunit A13  Ndufa13  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ndufa13  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13  RGD1565358_predicted  similar to genes associated with retinoid-IFN-induced mortality 19 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565358_predicted  similar to genes associated with retinoid-IFN-induced mortality 19 (predicted)  LOC314759  similar to genes associated with retinoid-IFN-induced mortality 19  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314759  similar to genes associated with retinoid-IFN-induced mortality 19      Symbol and Name status set to provisional 70820 PROVISIONAL