Zfp12 (zinc finger protein 12) - Rat Genome Database

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Gene: Zfp12 (zinc finger protein 12) Rattus norvegicus
Analyze
Symbol: Zfp12
Name: zinc finger protein 12
RGD ID: 1564396
Description: Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in centrosome and nucleoplasm. Orthologous to human ZNF12 (zinc finger protein 12); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC126572.1; LOC288486; RGD1564396; similar to hypothetical protein C530015C18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,430,546 - 16,446,063 (-)NCBIGRCr8
mRatBN7.21211,316,971 - 11,330,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,316,872 - 11,330,558 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01213,370,504 - 13,384,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,372,302 - 13,374,500 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01215,411,254 - 15,424,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,679,147 - 11,689,899 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,110,319 - 13,123,753 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16806083  


Genomics

Comparative Map Data
Zfp12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,430,546 - 16,446,063 (-)NCBIGRCr8
mRatBN7.21211,316,971 - 11,330,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,316,872 - 11,330,558 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01213,370,504 - 13,384,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,372,302 - 13,374,500 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01215,411,254 - 15,424,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,679,147 - 11,689,899 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,110,319 - 13,123,753 (-)NCBICelera
Cytogenetic Map12p11NCBI
ZNF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,688,433 - 6,706,947 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,688,433 - 6,706,947 (-)EnsemblGRCh38hg38GRCh38
GRCh3776,728,064 - 6,746,578 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,694,589 - 6,713,091 (-)NCBINCBI36Build 36hg18NCBI36
Build 3476,501,306 - 6,513,785NCBI
Celera75,988,584 - 6,007,102 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,599,688 - 6,618,206 (-)NCBIHuRef
CHM1_176,727,699 - 6,746,152 (-)NCBICHM1_1
T2T-CHM13v2.076,807,510 - 6,826,041 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,775,090 - 6,793,604 (-)NCBI
Zfp12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,220,910 - 143,233,712 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,220,918 - 143,234,589 (+)EnsemblGRCm39 Ensembl
GRCm385143,235,138 - 143,248,834 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,235,163 - 143,248,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv375143,996,887 - 144,009,649 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,500,348 - 143,513,090 (+)NCBIMGSCv36mm8
Celera5140,279,532 - 140,292,231 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.02NCBI
Znf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,028,116 - 13,034,444 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,019,068 - 13,034,601 (+)NCBIChiLan1.0ChiLan1.0
ZNF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2610,967,464 - 10,986,235 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,292,177 - 59,310,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,739,745 - 6,758,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,880,295 - 6,898,636 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,880,295 - 6,898,636 (-)Ensemblpanpan1.1panPan2
ZNF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,008,747 - 12,049,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,037,104 - 12,048,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,631,410 - 13,667,898 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,008,693 - 12,052,026 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,037,234 - 12,051,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,884,325 - 11,927,579 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,863,353 - 11,906,647 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,090,745 - 12,134,105 (-)NCBIUU_Cfam_GSD_1.0
Znf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,248,010 - 140,265,675 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765239,119 - 247,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765239,070 - 256,731 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,455,021 - 4,470,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,455,011 - 4,470,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23144,234,837 - 144,249,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,902,671 - 15,918,898 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,903,481 - 15,910,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102116,234 - 133,882 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474030,634,885 - 30,650,101 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp12
57 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:131
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000038577, ENSRNOT00000038584, ENSRNOT00000071488, ENSRNOT00000074128
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat

Markers in Region
RH141581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21816,520,969 - 16,521,163 (+)MAPPERmRatBN7.2
mRatBN7.21211,317,019 - 11,317,213 (-)MAPPERmRatBN7.2
mRatBN7.21211,317,019 - 11,317,213 (+)MAPPERmRatBN7.2
mRatBN7.21816,520,969 - 16,521,163 (-)MAPPERmRatBN7.2
Rnor_6.01817,428,863 - 17,429,056NCBIRnor6.0
Rnor_6.01213,370,553 - 13,370,746NCBIRnor6.0
Rnor_5.01215,411,303 - 15,411,496UniSTSRnor5.0
Rnor_5.01817,182,865 - 17,183,058UniSTSRnor5.0
RGSC_v3.41817,099,133 - 17,099,326UniSTSRGSC3.4
RGSC_v3.41211,677,551 - 11,677,744UniSTSRGSC3.4
Celera1213,110,368 - 13,110,561UniSTS
Celera1816,431,882 - 16,432,075UniSTS
Cytogenetic Map18p12UniSTS
Cytogenetic Map12p11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000038577   ⟹   ENSRNOP00000038579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,316,923 - 11,330,491 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099113   ⟹   ENSRNOP00000086388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,316,872 - 11,330,558 (-)Ensembl
RefSeq Acc Id: NM_001427192   ⟹   NP_001414121
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,430,561 - 16,444,068 (-)NCBI
RefSeq Acc Id: XM_063271140   ⟹   XP_063127210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,430,546 - 16,438,897 (-)NCBI
RefSeq Acc Id: XM_063271141   ⟹   XP_063127211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,430,546 - 16,439,228 (-)NCBI
RefSeq Acc Id: XM_221917   ⟹   XP_221917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,430,546 - 16,446,063 (-)NCBI
mRatBN7.21211,316,971 - 11,330,498 (-)NCBI
Rnor_6.01213,370,504 - 13,384,034 (-)NCBI
Rnor_5.01215,411,254 - 15,424,734 (-)NCBI
RGSC_v3.41211,679,147 - 11,689,899 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_221917   ⟸   XM_221917
- Peptide Label: isoform X1
- UniProtKB: A6K1M1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038579   ⟸   ENSRNOT00000038577
RefSeq Acc Id: ENSRNOP00000086388   ⟸   ENSRNOT00000099113
RefSeq Acc Id: XP_063127211   ⟸   XM_063271141
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127210   ⟸   XM_063271140
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414121   ⟸   NM_001427192
- UniProtKB: A6K1M0 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A296-F1-model_v2 AlphaFold D4A296 1-602 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564396 AgrOrtholog
BioCyc Gene G2FUF-19996 BioCyc
Ensembl Genes ENSRNOG00000006958 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038577.6 UniProtKB/TrEMBL
  ENSRNOT00000099113.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:288486 UniProtKB/TrEMBL
NCBI Gene 288486 ENTREZGENE
PANTHER GENE 10130-RELATED UniProtKB/TrEMBL
  KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 436 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 696 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp12 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006958 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP KRAB domain (Kruppel-associated box) UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A6K1M0 ENTREZGENE, UniProtKB/TrEMBL
  A6K1M1 ENTREZGENE, UniProtKB/TrEMBL
  D4A296_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Zfp12  zinc finger protein 12  AC126572.1    Data merged from RGD:15003323 737654 PROVISIONAL
2019-11-08 AC126572.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-03-07 Zfp12  zinc finger protein 12  RGD1564396_predicted  similar to hypothetical protein C530015C18 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564396_predicted  similar to hypothetical protein C530015C18 (predicted)  LOC288486  similar to hypothetical protein C530015C18  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288486  similar to hypothetical protein C530015C18      Symbol and Name status set to provisional 70820 PROVISIONAL