Bmper (BMP-binding endothelial regulator) - Rat Genome Database

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Gene: Bmper (BMP-binding endothelial regulator) Rattus norvegicus
Analyze
Symbol: Bmper
Name: BMP-binding endothelial regulator
RGD ID: 1563373
Description: Predicted to be involved in several processes, including blood vessel endothelial cell proliferation involved in sprouting angiogenesis; cell surface receptor protein serine/threonine kinase signaling pathway; and positive regulation of intracellular signal transduction. Predicted to act upstream of or within inner ear development and negative regulation of BMP signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in opiate dependence. Orthologous to human BMPER (BMP binding endothelial regulator); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: BMP-binding endothelial regulator protein; LOC300455; RGD1563373; similar to Crossveinless 2
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8830,008,049 - 30,253,201 (+)NCBIGRCr8
mRatBN7.2821,732,225 - 21,977,261 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl821,732,225 - 21,977,256 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx825,759,640 - 26,007,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0824,056,975 - 24,305,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0821,963,092 - 22,208,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0824,369,916 - 24,615,484 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl824,369,916 - 24,615,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0824,409,998 - 24,655,253 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4822,975,570 - 23,096,066 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera823,311,494 - 23,555,945 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-nitropyrene  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diazinon  (EXP)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
fonofos  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
furan  (EXP,ISO)
gentamycin  (EXP)
glucose  (ISO)
glyphosate  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel sulfate  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pravastatin  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
terbufos  (ISO)
testosterone  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Substance dependence low-density whole genome association study in two distinct American populations. Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.
Additional References at PubMed
PMID:12897139   PMID:16545622   PMID:18787191   PMID:21795542   PMID:24006456   PMID:28124060  


Genomics

Comparative Map Data
Bmper
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8830,008,049 - 30,253,201 (+)NCBIGRCr8
mRatBN7.2821,732,225 - 21,977,261 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl821,732,225 - 21,977,256 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx825,759,640 - 26,007,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0824,056,975 - 24,305,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0821,963,092 - 22,208,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0824,369,916 - 24,615,484 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl824,369,916 - 24,615,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0824,409,998 - 24,655,253 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4822,975,570 - 23,096,066 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera823,311,494 - 23,555,945 (+)NCBICelera
Cytogenetic Map8q13NCBI
BMPER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38733,904,915 - 34,156,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl733,904,308 - 34,156,427 (+)EnsemblGRCh38hg38GRCh38
GRCh37733,944,527 - 34,196,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36733,911,048 - 34,162,009 (+)NCBINCBI36Build 36hg18NCBI36
Celera733,926,362 - 34,175,842 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef733,824,354 - 34,076,851 (+)NCBIHuRef
CHM1_1733,944,099 - 34,195,741 (+)NCBICHM1_1
T2T-CHM13v2.0734,044,656 - 34,296,293 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2733,988,876 - 34,239,892 (+)NCBI
Bmper
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39923,134,372 - 23,396,511 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl923,134,372 - 23,396,496 (+)EnsemblGRCm39 Ensembl
GRCm38923,223,076 - 23,485,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl923,223,076 - 23,485,200 (+)EnsemblGRCm38mm10GRCm38
MGSCv37923,027,520 - 23,289,646 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36922,973,478 - 23,235,604 (+)NCBIMGSCv36mm8
Celera920,484,051 - 20,745,958 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map99.55NCBI
BMPER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2638,706,699 - 38,956,652 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1787,031,420 - 87,281,703 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0734,508,583 - 34,759,860 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1734,903,178 - 35,152,110 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl734,903,178 - 35,152,110 (+)Ensemblpanpan1.1panPan2
BMPER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11445,910,634 - 46,154,922 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1445,910,739 - 46,153,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1445,346,415 - 45,596,871 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01445,846,768 - 46,092,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1445,846,476 - 46,092,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11445,953,080 - 46,196,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01445,632,493 - 45,876,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01446,006,152 - 46,250,841 (+)NCBIUU_Cfam_GSD_1.0
Bmper
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511890,493,879 - 90,846,200 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364789,705,604 - 9,941,340 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364789,705,634 - 9,941,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMPER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1839,412,838 - 39,663,592 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11839,417,830 - 39,664,010 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21843,216,784 - 43,461,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BMPER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12124,255,857 - 24,500,790 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2124,255,866 - 24,500,720 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604280,155,605 - 80,400,846 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmper
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477619,160,501 - 19,459,227 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477619,159,906 - 19,462,607 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bmper
893 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:477
Count of miRNA genes:263
Interacting mature miRNAs:322
Transcripts:ENSRNOT00000033460
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat

Markers in Region
BE102482  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2821,858,496 - 21,858,650 (+)MAPPERmRatBN7.2
Rnor_6.0824,496,726 - 24,496,879NCBIRnor6.0
Rnor_5.0824,536,495 - 24,536,648UniSTSRnor5.0
RGSC_v3.4822,976,897 - 22,977,050UniSTSRGSC3.4
Celera823,437,175 - 23,437,328UniSTS
RH 3.4 Map8190.6UniSTS
Cytogenetic Map8q13UniSTS
G45792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2821,972,896 - 21,973,160 (+)MAPPERmRatBN7.2
Rnor_6.0824,611,122 - 24,611,383NCBIRnor6.0
Rnor_5.0824,650,891 - 24,651,152UniSTSRnor5.0
RGSC_v3.4823,091,709 - 23,091,970UniSTSRGSC3.4
Celera823,551,598 - 23,551,849UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 8 12 20 5
Low 3 39 45 35 2 35 8 11 64 6 21 6 8
Below cutoff 12 6 16 6 2 10

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000033460   ⟹   ENSRNOP00000038791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl821,732,225 - 21,977,256 (+)Ensembl
Rnor_6.0 Ensembl824,369,916 - 24,615,479 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100771   ⟹   ENSRNOP00000097461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl821,732,225 - 21,971,285 (+)Ensembl
RefSeq Acc Id: NM_001135799   ⟹   NP_001129271
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8830,008,166 - 30,253,198 (+)NCBI
mRatBN7.2821,732,225 - 21,977,256 (+)NCBI
Rnor_6.0824,369,916 - 24,615,479 (+)NCBI
Rnor_5.0824,409,998 - 24,655,253 (+)NCBI
RGSC_v3.4822,975,570 - 23,096,066 (+)RGD
Celera823,311,494 - 23,555,945 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242715   ⟹   XP_006242777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8830,055,492 - 30,253,201 (+)NCBI
mRatBN7.2821,779,827 - 21,977,261 (+)NCBI
Rnor_6.0824,416,147 - 24,615,484 (+)NCBI
Rnor_5.0824,409,998 - 24,655,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081015   ⟹   XP_038936943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8830,055,494 - 30,253,201 (+)NCBI
mRatBN7.2821,779,393 - 21,977,261 (+)NCBI
RefSeq Acc Id: XM_039081016   ⟹   XP_038936944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8830,069,118 - 30,253,201 (+)NCBI
mRatBN7.2821,793,173 - 21,977,261 (+)NCBI
RefSeq Acc Id: XR_010053940
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8830,008,049 - 30,174,309 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001129271 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936944 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83373 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038791
  ENSRNOP00000038791.5
  ENSRNOP00000097461.1
Reference Protein Sequences
RefSeq Acc Id: NP_001129271   ⟸   NM_001135799
- Peptide Label: precursor
- UniProtKB: F1M661 (UniProtKB/TrEMBL),   A6JYA2 (UniProtKB/TrEMBL),   A0A8I6GMI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242777   ⟸   XM_006242715
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000038791   ⟸   ENSRNOT00000033460
RefSeq Acc Id: XP_038936943   ⟸   XM_039081015
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936944   ⟸   XM_039081016
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000097461   ⟸   ENSRNOT00000100771
Protein Domains
VWFC   VWFD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M661-F1-model_v2 AlphaFold F1M661 1-685 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695810
Promoter ID:EPDNEW_R6334
Type:multiple initiation site
Name:Bmper_1
Description:BMP-binding endothelial regulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0824,370,387 - 24,370,447EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563373 AgrOrtholog
BioCyc Gene G2FUF-31356 BioCyc
Ensembl Genes ENSRNOG00000015357 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033460 ENTREZGENE
  ENSRNOT00000033460.6 UniProtKB/TrEMBL
  ENSRNOT00000100771.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.200.20 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Prot_Inh_CR_TIL UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/TrEMBL
  Unchr_dom_Cys-rich UniProtKB/TrEMBL
  VWF_C UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
KEGG Report rno:300455 UniProtKB/TrEMBL
NCBI Gene 300455 ENTREZGENE
PANTHER CROSSVEINLESS 2 UniProtKB/TrEMBL
  CROSSVEINLESS 2 UniProtKB/TrEMBL
Pfam PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PhenoGen Bmper PhenoGen
PROSITE VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015357 RatGTEx
SMART SM00832 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP Cysrich_TIL UniProtKB/TrEMBL
  FnI-like domain UniProtKB/TrEMBL
UniProt A0A8I6GMI8 ENTREZGENE, UniProtKB/TrEMBL
  A6JYA2 ENTREZGENE, UniProtKB/TrEMBL
  F1M661 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Bmper  BMP-binding endothelial regulator   Bmper_predicted  BMP-binding endothelial regulator (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Bmper_predicted  BMP-binding endothelial regulator (predicted)  RGD1563373_predicted  similar to Crossveinless 2 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1563373_predicted  similar to Crossveinless 2 (predicted)  LOC300455  similar to Crossveinless 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC300455  similar to Crossveinless 2      Symbol and Name status set to provisional 70820 PROVISIONAL