Fam193b (family with sequence similarity 193, member B) - Rat Genome Database

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Gene: Fam193b (family with sequence similarity 193, member B) Rattus norvegicus
Analyze
Symbol: Fam193b
Name: family with sequence similarity 193, member B
RGD ID: 1562335
Description: Predicted to be located in nuclear speck and nucleolus. Predicted to be active in cytoplasm and nucleus. Orthologous to human FAM193B (family with sequence similarity 193 member B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498703; LOC498703; RGD1562335; similar to mKIAA1931 protein; uncharacterized protein LOC498703
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,071,974 - 9,104,659 (+)NCBIGRCr8
mRatBN7.2179,066,818 - 9,099,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,084,349 - 9,115,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,614,369 - 10,645,593 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,080,738 - 9,112,166 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,595,742 - 9,628,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,595,761 - 9,628,413 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,704,516 - 11,737,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,112,073 - 15,143,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,146,729 - 9,178,104 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
nuclear speck  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21177767  


Genomics

Comparative Map Data
Fam193b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,071,974 - 9,104,659 (+)NCBIGRCr8
mRatBN7.2179,066,818 - 9,099,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,084,349 - 9,115,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,614,369 - 10,645,593 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,080,738 - 9,112,166 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,595,742 - 9,628,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,595,761 - 9,628,413 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,704,516 - 11,737,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,112,073 - 15,143,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,146,729 - 9,178,104 (+)NCBICelera
Cytogenetic Map17p14NCBI
FAM193B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,519,788 - 177,554,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,519,789 - 177,554,586 (-)EnsemblGRCh38hg38GRCh38
GRCh375176,946,789 - 176,981,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,879,396 - 176,914,144 (-)NCBINCBI36Build 36hg18NCBI36
Celera5171,520,903 - 171,555,672 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,866,585 - 171,901,166 (-)NCBIHuRef
CHM1_15176,379,285 - 176,413,866 (-)NCBICHM1_1
T2T-CHM13v2.05178,062,047 - 178,096,824 (-)NCBIT2T-CHM13v2.0
Fam193b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,687,129 - 55,718,920 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,687,129 - 55,718,933 (-)EnsemblGRCm39 Ensembl
GRCm381355,539,316 - 55,571,120 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,539,316 - 55,571,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv371355,640,677 - 55,672,481 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,548,941 - 55,559,631 (-)NCBIMGSCv36mm8
Celera1356,593,438 - 56,625,240 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Fam193b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,758,629 - 29,774,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBIChiLan1.0ChiLan1.0
FAM193B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,602,864 - 172,637,492 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,742,405 - 170,777,717 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,820,255 - 172,855,574 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,881,778 - 179,915,942 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,884,021 - 179,915,964 (-)Ensemblpanpan1.1panPan2
FAM193B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1435,818,805 - 35,852,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl435,818,087 - 35,852,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha435,786,745 - 35,819,886 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,185,479 - 36,218,631 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,185,360 - 36,218,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,011,091 - 36,044,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,196,837 - 36,229,992 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,704,314 - 36,739,341 (+)NCBIUU_Cfam_GSD_1.0
Fam193b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,770,762 - 122,802,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,798,347 - 1,813,164 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,795,669 - 1,827,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM193B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,396,371 - 80,430,071 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,396,371 - 80,430,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,859,341 - 81,890,913 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM193B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,530,685 - 79,567,667 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,530,172 - 79,559,701 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,723,112 - 10,759,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam193b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,551,274 - 12,567,785 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,535,844 - 12,569,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam193b
149 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:60
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000017349
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat

Markers in Region
BE120524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,088,684 - 9,088,846 (+)MAPPERmRatBN7.2
Rnor_6.0179,617,589 - 9,617,750NCBIRnor6.0
Rnor_5.01711,726,325 - 11,726,486UniSTSRnor5.0
RGSC_v3.41715,132,673 - 15,132,834UniSTSRGSC3.4
Celera179,167,279 - 9,167,440UniSTS
RH 3.4 Map1777.9UniSTS
Cytogenetic Map17p14UniSTS
RH141479  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map1778.2UniSTS
Cytogenetic Map17p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 41 25 19 25 73 29 34 11
Low 9 16 16 16 8 11 1 6 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB717749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB719022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN936834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017349   ⟹   ENSRNOP00000017350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,068,082 - 9,099,508 (+)Ensembl
Rnor_6.0 Ensembl179,596,957 - 9,628,413 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089990   ⟹   ENSRNOP00000068724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,886 - 9,099,508 (+)Ensembl
Rnor_6.0 Ensembl179,595,761 - 9,628,411 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099981   ⟹   ENSRNOP00000097809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,822 - 9,099,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100699   ⟹   ENSRNOP00000096762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,837 - 9,099,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114459   ⟹   ENSRNOP00000079577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,079,739 - 9,099,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116388   ⟹   ENSRNOP00000093024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117137   ⟹   ENSRNOP00000088708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)Ensembl
RefSeq Acc Id: NM_001170408   ⟹   NP_001163879
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,233 - 9,104,659 (+)NCBI
mRatBN7.2179,068,082 - 9,099,511 (+)NCBI
Rnor_6.0179,596,957 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
RGSC_v3.41715,112,073 - 15,143,497 (+)RGD
Celera179,146,729 - 9,178,104 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253646   ⟹   XP_006253708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,979 - 9,104,659 (+)NCBI
mRatBN7.2179,066,838 - 9,099,511 (+)NCBI
Rnor_6.0179,595,742 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253651   ⟹   XP_006253713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,207 - 9,104,659 (+)NCBI
mRatBN7.2179,066,995 - 9,099,511 (+)NCBI
Rnor_6.0179,595,767 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600642   ⟹   XP_017456131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,155 - 9,104,659 (+)NCBI
mRatBN7.2179,067,006 - 9,099,511 (+)NCBI
Rnor_6.0179,595,929 - 9,628,414 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095995   ⟹   XP_038951923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,980 - 9,104,659 (+)NCBI
mRatBN7.2179,066,818 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095996   ⟹   XP_038951924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,177 - 9,104,659 (+)NCBI
mRatBN7.2179,067,001 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095998   ⟹   XP_038951926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,230 - 9,104,659 (+)NCBI
mRatBN7.2179,068,055 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095999   ⟹   XP_038951927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,302 - 9,104,659 (+)NCBI
mRatBN7.2179,068,149 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096000   ⟹   XP_038951928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,159 - 9,104,659 (+)NCBI
mRatBN7.2179,067,008 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096001   ⟹   XP_038951929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,175 - 9,104,659 (+)NCBI
mRatBN7.2179,067,007 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096002   ⟹   XP_038951930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,974 - 9,104,659 (+)NCBI
mRatBN7.2179,066,995 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096003   ⟹   XP_038951931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,978 - 9,095,167 (+)NCBI
mRatBN7.2179,066,833 - 9,090,018 (+)NCBI
RefSeq Acc Id: XM_039096004   ⟹   XP_038951932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,980 - 9,104,659 (+)NCBI
mRatBN7.2179,066,837 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_063276686   ⟹   XP_063132756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,207 - 9,104,659 (+)NCBI
RefSeq Acc Id: XR_005495313
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,978 - 9,100,282 (+)NCBI
mRatBN7.2179,066,833 - 9,095,030 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001163879   ⟸   NM_001170408
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253708   ⟸   XM_006253646
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A731 (UniProtKB/TrEMBL),   A0A8I6AF06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253713   ⟸   XM_006253651
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456131   ⟸   XM_017600642
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ATD9 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068724   ⟸   ENSRNOT00000089990
RefSeq Acc Id: ENSRNOP00000017350   ⟸   ENSRNOT00000017349
RefSeq Acc Id: XP_038951923   ⟸   XM_039095995
- Peptide Label: isoform X3
- UniProtKB: A0A8I6B4R3 (UniProtKB/TrEMBL),   A0A8I6AF06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951931   ⟸   XM_039096003
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951932   ⟸   XM_039096004
- Peptide Label: isoform X9
- UniProtKB: B2RYL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951930   ⟸   XM_039096002
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951924   ⟸   XM_039095996
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951929   ⟸   XM_039096001
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951928   ⟸   XM_039096000
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951926   ⟸   XM_039095998
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951927   ⟸   XM_039095999
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000096762   ⟸   ENSRNOT00000100699
RefSeq Acc Id: ENSRNOP00000093024   ⟸   ENSRNOT00000116388
RefSeq Acc Id: ENSRNOP00000088708   ⟸   ENSRNOT00000117137
RefSeq Acc Id: ENSRNOP00000079577   ⟸   ENSRNOT00000114459
RefSeq Acc Id: ENSRNOP00000097809   ⟸   ENSRNOT00000099981
RefSeq Acc Id: XP_063132756   ⟸   XM_063276686
- Peptide Label: isoform X6
- UniProtKB: A6KAR0 (UniProtKB/TrEMBL)
Protein Domains
FAM193 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDR1-F1-model_v2 AlphaFold D3ZDR1 1-777 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700303
Promoter ID:EPDNEW_R10823
Type:initiation region
Name:Fam193b_1
Description:family with sequence similarity 193, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0179,595,683 - 9,595,743EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562335 AgrOrtholog
BioCyc Gene G2FUF-10215 BioCyc
Ensembl Genes ENSRNOG00000039807 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017349 ENTREZGENE
  ENSRNOT00000017349.7 UniProtKB/TrEMBL
  ENSRNOT00000089990.2 UniProtKB/TrEMBL
  ENSRNOT00000099981.1 UniProtKB/TrEMBL
  ENSRNOT00000100699.1 UniProtKB/TrEMBL
  ENSRNOT00000114459.1 UniProtKB/TrEMBL
  ENSRNOT00000116388.1 UniProtKB/TrEMBL
  ENSRNOT00000117137.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367512 IMAGE-MGC_LOAD
InterPro FAM193 UniProtKB/TrEMBL
  FAM193_C UniProtKB/TrEMBL
KEGG Report rno:498703 UniProtKB/TrEMBL
MGC_CLONE MGC:188694 IMAGE-MGC_LOAD
NCBI Gene 498703 ENTREZGENE
PANTHER PTHR15109 UniProtKB/TrEMBL
  PTHR15109:SF3 UniProtKB/TrEMBL
Pfam FAM193_C UniProtKB/TrEMBL
PhenoGen Fam193b PhenoGen
RatGTEx ENSRNOG00000039807 RatGTEx
UniProt A0A8I6A731 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AF06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B4R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5I0 ENTREZGENE, UniProtKB/TrEMBL
  A6KAR0 ENTREZGENE, UniProtKB/TrEMBL
  B2RYL2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDR1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-25 Fam193b  family with sequence similarity 193, member B  RGD1562335  similar to mKIAA1931 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562335  similar to mKIAA1931 protein   RGD1562335_predicted  similar to mKIAA1931 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562335_predicted  similar to mKIAA1931 protein (predicted)  LOC498703  similar to mKIAA1931 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498703  similar to mKIAA1931 protein      Symbol and Name status set to provisional 70820 PROVISIONAL