Lhfpl3 (LHFPL tetraspan subfamily member 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lhfpl3 (LHFPL tetraspan subfamily member 3) Rattus norvegicus
Analyze
Symbol: Lhfpl3
Name: LHFPL tetraspan subfamily member 3
RGD ID: 1559727
Description: Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3); INTERACTS WITH bisphenol A; Soman; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
Previously known as: lipoma HMGIC fusion partner-like 3; LOC499977; RGD1559727; similar to lipoma HMGIC fusion partner-like 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.048,537,590 - 8,994,097 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.048,374,309 - 8,997,308 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.447,403,888 - 7,785,897 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera47,616,322 - 7,991,065 (-)NCBICelera
Cytogenetic Map4q11NCBI


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Lhfpl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.048,537,590 - 8,994,097 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.048,374,309 - 8,997,308 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.447,403,888 - 7,785,897 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera47,616,322 - 7,991,065 (-)NCBICelera
Cytogenetic Map4q11NCBI
LHFPL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387104,328,603 - 104,908,561 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7104,328,603 - 104,908,561 (+)EnsemblGRCh38hg38GRCh38
GRCh377103,969,051 - 104,549,008 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367103,756,340 - 104,336,241 (+)NCBINCBI36Build 36hg18NCBI36
Build 347103,563,054 - 104,141,630NCBI
Celera798,775,122 - 99,354,695 (+)NCBICelera
Cytogenetic Map7q22.2-q22.3NCBI
HuRef798,328,801 - 98,908,945 (+)NCBIHuRef
CHM1_17103,902,093 - 104,482,319 (+)NCBICHM1_1
T2T-CHM13v2.07105,642,866 - 106,223,396 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27103,329,569 - 103,909,709 (+)NCBI
Lhfpl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,951,052 - 23,480,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl522,951,057 - 23,480,595 (+)EnsemblGRCm39 Ensembl
GRCm38522,746,054 - 23,275,597 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl522,746,059 - 23,275,597 (+)EnsemblGRCm38mm10GRCm38
MGSCv37522,252,011 - 22,781,415 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36522,257,883 - 22,787,421 (+)NCBIMGSCv36mm8
Celera519,692,811 - 20,216,542 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map510.07NCBI
Lhfpl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554109,122,222 - 9,637,273 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554109,121,854 - 9,633,760 (+)NCBIChiLan1.0ChiLan1.0
LHFPL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26141,180,346 - 141,757,632 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17189,450,310 - 190,028,228 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0796,316,385 - 96,896,361 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17109,059,223 - 109,629,948 (+)NCBIpanpan1.1PanPan1.1panPan2
LHFPL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1815,069,231 - 15,639,292 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01815,726,611 - 16,298,866 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1815,727,817 - 16,298,795 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11815,508,141 - 16,068,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01815,431,570 - 16,001,171 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01815,711,534 - 16,273,580 (-)NCBIUU_Cfam_GSD_1.0
LHFPL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9104,275,423 - 104,827,405 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19104,269,664 - 104,828,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29115,316,780 - 115,497,078 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12173,260,773 - 73,822,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604230,158,814 - 30,727,267 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhfpl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473924,555,164 - 25,154,476 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473924,555,435 - 25,154,784 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Markers in Region
D4Arb19  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2412,292,659 - 12,292,765 (+)MAPPERmRatBN7.2
Rnor_6.048,843,105 - 8,843,210NCBIRnor6.0
Rnor_5.048,844,377 - 8,844,482UniSTSRnor5.0
RGSC_v3.447,697,100 - 7,697,206RGDRGSC3.4
RGSC_v3.447,697,101 - 7,697,206UniSTSRGSC3.4
RGSC_v3.147,697,100 - 7,697,206RGD
Celera47,902,325 - 7,902,430UniSTS
Cytogenetic Map4q11UniSTS
BF386939  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2411,926,978 - 11,927,177 (+)MAPPERmRatBN7.2
Rnor_6.048,460,313 - 8,460,511NCBIRnor6.0
Rnor_5.048,464,933 - 8,465,131UniSTSRnor5.0
RGSC_v3.447,326,509 - 7,326,707UniSTSRGSC3.4
Celera47,538,021 - 7,538,219UniSTS
RH 3.4 Map428.7UniSTS
Cytogenetic Map4q11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008762671   ⟹   XP_008760893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.048,537,590 - 8,994,097 (-)NCBI
RefSeq Acc Id: XM_008775653   ⟹   XP_008773875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera47,616,322 - 7,991,065 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008760893 (Get FASTA)   NCBI Sequence Viewer  
  XP_008773875 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008773875   ⟸   XM_008775653
RefSeq Acc Id: XP_008760893   ⟸   XM_008762671


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559727 AgrOrtholog
NCBI Gene 499977 ENTREZGENE
PhenoGen Lhfpl3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-05 Lhfpl3  LHFPL tetraspan subfamily member 3  Lhfpl3  lipoma HMGIC fusion partner-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Lhfpl3  lipoma HMGIC fusion partner-like 3  RGD1559727_predicted  similar to lipoma HMGIC fusion partner-like 3 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559727_predicted  similar to lipoma HMGIC fusion partner-like 3 (predicted)  LOC499977  similar to lipoma HMGIC fusion partner-like 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499977  similar to lipoma HMGIC fusion partner-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL