Zcchc12 (zinc finger CCHC-type containing 12)

Gene: Zcchc12 (zinc finger CCHC-type containing 12) Rattus norvegicus

Analyze

Symbol:

Zcchc12

Name:

zinc finger CCHC-type containing 12

RGD ID:

1359439

Description:

Predicted to enable SUMO binding activity and transcription coactivator activity. Predicted to act upstream of or within BMP signaling pathway and positive regulation of transcription by RNA polymerase II. Predicted to be located in PML body and nuclear speck. Predicted to be active in nucleus. Orthologous to several human genes including ZCCHC12 (zinc finger CCHC-type containing 12); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313436; similar to RIKEN cDNA 2810028A01; zinc finger CCHC domain-containing protein 12; zinc finger, CCHC domain containing 12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	120,299,138 - 120,302,465 (+)	NCBI		GRCr8
mRatBN7.2	X	115,433,444 - 115,436,691 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	115,433,259 - 115,436,692 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	117,535,737 - 117,538,922 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	121,104,821 - 121,108,006 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	118,651,026 - 118,654,211 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	122,808,581 - 122,811,790 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	122,808,605 - 122,811,789 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	8,729,463 - 8,732,648 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	8,735,023 - 8,738,204 (-)	NCBI
Celera	X	114,669,169 - 114,672,354 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

esophagus squamous cell carcinoma (ISO)

syndromic X-linked intellectual disability Cabezas type (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (EXP)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

irinotecan (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methamphetamine (EXP)

methylisothiazolinone (ISO)

ozone (ISO)

paraquat (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silver atom (ISO)

silver(0) (ISO)

Soman (EXP)

tetraphene (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

BMP signaling pathway (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

Cellular Component

nuclear speck (ISO)

nucleus (IBA,ISO)

PML body (ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

SUMO binding (ISO)

transcription coactivator activity (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	null	JRS Domain-based curation
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:15489334	PMID:19416967	PMID:21172456

Genomics

Comparative Map Data

Zcchc12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	120,299,138 - 120,302,465 (+)	NCBI		GRCr8
mRatBN7.2	X	115,433,444 - 115,436,691 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	115,433,259 - 115,436,692 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	117,535,737 - 117,538,922 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	121,104,821 - 121,108,006 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	118,651,026 - 118,654,211 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	122,808,581 - 122,811,790 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	122,808,605 - 122,811,789 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	8,729,463 - 8,732,648 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	8,735,023 - 8,738,204 (-)	NCBI
Celera	X	114,669,169 - 114,672,354 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

ZCCHC12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	118,823,824 - 118,826,968 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	118,823,824 - 118,826,968 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	117,957,787 - 117,960,931 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	117,841,815 - 117,844,959 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	117,739,668 - 117,742,812	NCBI
Celera	X	118,412,636 - 118,415,780 (+)	NCBI		Celera
Cytogenetic Map	X	q24	NCBI
HuRef	X	107,450,846 - 107,453,876 (+)	NCBI		HuRef
CHM1_1	X	117,868,691 - 117,871,835 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	117,201,557 - 117,204,701 (+)	NCBI		T2T-CHM13v2.0

Zcchc12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	35,459,553 - 35,462,817 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	35,459,557 - 35,462,811 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	36,195,904 - 36,199,164 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	36,195,904 - 36,199,158 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	33,735,899 - 33,739,153 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	32,627,433 - 32,630,595 (+)	NCBI		MGSCv36	mm8
Celera	X	22,924,652 - 22,927,906 (+)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	20.58	NCBI

Zcchc12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955534	1,132,104 - 1,133,312 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955534	1,131,585 - 1,133,382 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZCCHC12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	118,182,772 - 118,185,927 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	118,186,377 - 118,189,531 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	107,831,784 - 107,834,964 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	118,297,824 - 118,301,054 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	118,299,326 - 118,300,534 (+)	Ensembl	panpan1.1		panPan2

ZCCHC12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	91,004,777 - 91,008,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	77,078,676 - 77,081,923 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	92,743,141 - 92,746,388 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	92,743,139 - 92,746,387 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	90,196,340 - 90,199,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	91,955,078 - 91,958,325 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	91,683,385 - 91,686,632 (+)	NCBI		UU_Cfam_GSD_1.0

Zcchc12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	89,962,878 - 89,965,993 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936479	11,021,502 - 11,024,612 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZCCHC12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	31,565,021 - 31,568,265 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zcchc12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624895	2,806,703 - 2,807,908 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624895	2,805,303 - 2,808,429 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zcchc12
2 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	103
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000017567
Prediction methods:	Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
5685004	Bss104	Bone structure and strength QTL 104	3.9		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	X	113805422	126975220	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

Markers in Region

RH140330

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	115,436,518 - 115,436,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	122,811,618 - 122,811,763	NCBI	Rnor6.0
Rnor_5.0	X	122,961,375 - 122,961,520	UniSTS	Rnor5.0
RGSC_v3.4	X	8,729,490 - 8,729,635	UniSTS	RGSC3.4
Celera	X	114,672,182 - 114,672,327	UniSTS
Cytogenetic Map	X	q12	UniSTS

RH139497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	115,436,360 - 115,436,540 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	122,811,460 - 122,811,639	NCBI	Rnor6.0
Rnor_5.0	X	122,961,217 - 122,961,396	UniSTS	Rnor5.0
RGSC_v3.4	X	8,729,614 - 8,729,793	UniSTS	RGSC3.4
Celera	X	114,672,024 - 114,672,203	UniSTS
RH 3.4 Map	5	789.8	UniSTS
Cytogenetic Map	X	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1								74	6	20
Low	2	36	55	41	9	41	3	5		28	21	11	3
Below cutoff		7	2		10		5	6		1			5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF405776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000017567 ⟹ ENSRNOP00000017567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	115,433,414 - 115,436,691 (+)	Ensembl
Rnor_6.0 Ensembl	X	122,808,605 - 122,811,789 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094904 ⟹ ENSRNOP00000077726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	115,433,833 - 115,436,692 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111671 ⟹ ENSRNOP00000090059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	115,433,259 - 115,436,692 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113244 ⟹ ENSRNOP00000079816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	115,433,414 - 115,436,691 (+)	Ensembl

RefSeq Acc Id:

NM_001014065 ⟹ NP_001014087

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,280 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,506 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,605 - 122,811,790 (+)	NCBI
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI
RGSC_v3.4	X	8,729,463 - 8,732,648 (-)	RGD
Celera	X	114,669,169 - 114,672,354 (+)	RGD

Sequence:

show sequence

GTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTATTCGAATCCGGTTACCTG
TGGGGCGACCGGACTCACAGCAGCCTATCGAAGCGGAATCCGAGCTTGAATTCGGTGCAGTTGA
TTGTAGAGCTGGTCTTGATGTCCTGAACATCAGGTTTTGCGACCCCCAGTCGATCGAGGTCCAT
CAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGACACAGGCTACAGAGGCTGGAAAATACT
CGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTGCTGTACTGCTGAAGATAAAGCAGTTTT
TGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTAAGATATCCTATCACTGTTGTCAGAAAT
GGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGGCAGAACTCACCCCTGCCACCTTGGGCT
CATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTCCTTTAATGGCCAGCATGGCAGAGAGAA
ACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCAGGGGGAAGAAACCTTTGAAAACTGGCT
GAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATGCCTGAGGAGGAAAAGGTCAGGCGCCTA
ATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGCGTTTGCTCCAGGCTGCCAATCCCTGCC
TTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGTCTTTGGGGAGTCTGAGAGCAGTGTGAC
AGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCTGGAGAGAAACCATCCCTGTATGTGATC
CGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAGGGGTTTTTGCTGAGAGAGAGGCAAACC
AGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGATGAGTACTGACCTTCGATTCAGGCTTAA
GAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGCCTTCCCAATTTCCTGGAGTTAATCAGG
ATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTATTCATCCAAAGCGGCCCAGGAGATCCC
AGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAGCTCCCCACCAGTAATGATCAGCAGTAT
TGACTGCAATGTGATAGAGATAGATGACTCTCCTGATGATTCCGATGAGGACGTGATCTTGGTG
GAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAGGGCCATCCTTCCTAGGCAGGGCTGTAT
CCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACATTTTTGAGATCCAGGCTCCTTCCACCAG
CAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGGGAGCTGCGCAGAGCCAGGAAGCGCAAA
CACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTCACTCAAAAGAAACCTGTGACAATGAGA
GTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCACCCTGCAGGAGCTGACACATACAGAGGA
GAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTCTCTGAACTACACTAAGATGCTTTGCTC
CAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCAATGGTGGAAAAGTTGGGGGGACAAACT
TCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTTTCTTGAATATCAGTACAGTAAAGAGAA
GTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTGCCTAACAAACAGCCTATTTTCTGTGTG
AACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAAGTGGTATTGTTCATTGTTCAATCCTCA
AGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAACTCTCTACCTTGTGCAACAGTTGTCAA
CCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTGTGTTCCTAGATTAGATATAAGAATAGA
CAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTGTATTTTTTCACCAAAATGTATGTTGTG
GCCTTCTCTGTCAATAAATATATACATATATGTCAGCATCTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257448 ⟹ XP_006257510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,226 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,444 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,581 - 122,811,790 (+)	NCBI
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI

Sequence:

show sequence

CGCTCGTCACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACT
GCGCTATTCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGTAGCAGCCTATCGAAGCGGA
ATCCGAGCTTGAATTCGGTGCAGTTGATTGTAGAGCTGGTCTTGATGTCCTGAACATCAGGTTT
TGCGACCCCCAGTCGATCGAGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGA
CACAGGCTACAGAGGCTGGAAAATACTCGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTG
CTGTACTGCTGAAGATAAAGCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTA
AGATATCCTATCACTGTTGTCAGAAATGGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGG
CAGAACTCACCCCTGCCACCTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTC
CTTTAATGGCCAGCATGGCAGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCA
GGGGGAAGAAACCTTTGAAAACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATG
CCTGAGGAGGAAAAGGTCAGGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGC
GTTTGCTCCAGGCTGCCAATCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGT
CTTTGGGGAGTCTGAGAGCAGTGTGACAGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCT
GGAGAGAAACCATCCCTGTATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAG
GGGTTTTTGCTGAGAGAGAGGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGAT
GAGTACTGACCTTCGATTCAGGCTTAAGAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGC
CTTCCCAATTTCCTGGAGTTAATCAGGATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTA
TTCATCCAAAGCGGCCCAGGAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAG
CTCCCCACCAGTAATGATCAGCAGTATTGACTGCAATGTGATAGAGATAGATGACTCTCCTGAT
GATTCCGATGAGGACGTGATCTTGGTGGAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAG
GGCCATCCTTCCTAGGCAGGGCTGTATCCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACAT
TTTTGAGATCCAGGCTCCTTCCACCAGCAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGG
GAGCTGCGCAGAGCCAGGAAGCGCAAACACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTC
ACTCAAAAGAAACCTGTGACAATGAGAGTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCAC
CCTGCAGGAGCTGACACATACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTC
TCTGAACTACACTAAGATGCTTTGCTCCAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCA
ATGGTGGAAAAGTTGGGGGGACAAACTTCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTT
TCTTGAATATCAGTACAGTAAAGAGAAGTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTG
CCTAACAAACAGCCTATTTTCTGTGTGAACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAA
GTGGTATTGTTCATTGTTCAATCCTCAAGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAA
CTCTCTACCTTGTGCAACAGTTGTCAACCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTG
TGTTCCTAGATTAGATATAAGAATAGACAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTG
TATTTTTTCACCAAAATGTATGTTGTGGCCTTCTCTGTCAATAAATATATACATATATGTCAGC
ATCTA

hide sequence

RefSeq Acc Id:

XM_006257449 ⟹ XP_006257511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,226 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,444 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,581 - 122,811,790 (+)	NCBI
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI

Sequence:

show sequence

CGCTCGTCACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACT
GCGCTATTCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGTAGCAGCCTATCGAAGCGGA
ATCCGAGCTTGAATTCGGTGCAGTTGATTGTAGAGCTGGGTAGGCTAATGTCTTGATGTCCTGA
ACATCAGGTTTTGCGACCCCCAGTCGATCGAGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTC
TCACGGGAGGACACAGGCTACAGAGGCTGGAAAATACTCGTTTCCTAGCTGGTACCCTACTGAG
ATTGGAGACTGCTGTACTGCTGAAGATAAAGCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGC
ATCGTGTATTAAGATATCCTATCACTGTTGTCAGAAATGGCTAGCATCCTTTCACGCATGGGTA
ACAGCCGGGGGCAGAACTCACCCCTGCCACCTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAG
GAGTCTTGGTCCTTTAATGGCCAGCATGGCAGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCA
GAGCCAGCCCAGGGGGAAGAAACCTTTGAAAACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTG
ATTGGCATATGCCTGAGGAGGAAAAGGTCAGGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCG
GGAGGTCATGCGTTTGCTCCAGGCTGCCAATCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCA
ATGAAACTGGTCTTTGGGGAGTCTGAGAGCAGTGTGACAGCCCACAGTAAATTTGTTAACACTG
TTCAGGAACCTGGAGAGAAACCATCCCTGTATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGC
TATCCAGGCAGGGGTTTTTGCTGAGAGAGAGGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTA
GGGGCTGAGATGAGTACTGACCTTCGATTCAGGCTTAAGAGTCTTCTCCGGGTATATGCAAATG
AGCCAGAGCGCCTTCCCAATTTCCTGGAGTTAATCAGGATGATAAGGGAGGAAGAGGAATGGGA
GGAGGCTTTTATTCATCCAAAGCGGCCCAGGAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCT
ACATTTCAGAGCTCCCCACCAGTAATGATCAGCAGTATTGACTGCAATGTGATAGAGATAGATG
ACTCTCCTGATGATTCCGATGAGGACGTGATCTTGGTGGAGCCTGACGACCCACCACTGCCATC
CTCAAGTGCAGGGCCATCCTTCCTAGGCAGGGCTGTATCCGAGGACCAAGTGCTGGTCATTGAG
TCCCCTAACATTTTTGAGATCCAGGCTCCTTCCACCAGCAGTGGTGCTGGAAGGAAGAACAACA
ATAATTTTGGGGAGCTGCGCAGAGCCAGGAAGCGCAAACACACAGTCCATTGTTCCCACTGTGG
TGAGGAGGGTCACTCAAAAGAAACCTGTGACAATGAGAGTGACAGGGGTCAGGTTTTTGAGAAT
CTGATCATCACCCTGCAGGAGCTGACACATACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAG
CCATTGGCCTCTCTGAACTACACTAAGATGCTTTGCTCCAGCCTTAAATTAACCCTTACCCGTA
TTAAATGTTCAATGGTGGAAAAGTTGGGGGGACAAACTTCTAATTGCATGAACAAACCCACAAA
GTAGCTTTCTTTCTTGAATATCAGTACAGTAAAGAGAAGTGGCCTGACCTATGATCTTGTTCTC
TTTCCCCACTGCCTAACAAACAGCCTATTTTCTGTGTGAACCTATCTCCTTGGTGGCTTTATTC
TCTTTGTGAAAGTGGTATTGTTCATTGTTCAATCCTCAAGTAAGAAAAGTATTAAAAAGTACAA
ATTACCCAGAACTCTCTACCTTGTGCAACAGTTGTCAACCCTTTGGTGCCTATCCTAAATATTT
CTCTATATCTGTGTTCCTAGATTAGATATAAGAATAGACAAATGTGATCAAATAGAAGTGTTGT
TCTATATGCTGTATTTTTTCACCAAAATGTATGTTGTGGCCTTCTCTGTCAATAAATATATACA
TATATGTCAGCATCTA

hide sequence

RefSeq Acc Id:

XM_006257451 ⟹ XP_006257513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,138 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,492 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,588 - 122,811,790 (+)	NCBI
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI

Sequence:

show sequence

CACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTAT
TCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGGTAGAATCCATAGCCGAAAACGCCGCA
ATATCCTCTGGCTACCAGAGGATAGCAGCAGCCTATCGAAGCGGAATCCGAGCTTGAATTCGGT
GCAGTTGATTGTAGAGCTGGTCTTGATGTCCTGAACATCAGGTTTTGCGACCCCCAGTCGATCG
AGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGACACAGGCTACAGAGGCTGG
AAAATACTCGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTGCTGTACTGCTGAAGATAAA
GCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTAAGATATCCTATCACTGTTG
TCAGAAATGGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGGCAGAACTCACCCCTGCCAC
CTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTCCTTTAATGGCCAGCATGGC
AGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCAGGGGGAAGAAACCTTTGAA
AACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATGCCTGAGGAGGAAAAGGTCA
GGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGCGTTTGCTCCAGGCTGCCAA
TCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGTCTTTGGGGAGTCTGAGAGC
AGTGTGACAGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCTGGAGAGAAACCATCCCTGT
ATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAGGGGTTTTTGCTGAGAGAGA
GGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGATGAGTACTGACCTTCGATTC
AGGCTTAAGAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGCCTTCCCAATTTCCTGGAGT
TAATCAGGATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTATTCATCCAAAGCGGCCCAG
GAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAGCTCCCCACCAGTAATGATC
AGCAGTATTGACTGCAATGTGATAGAGATAGATGACTCTCCTGATGATTCCGATGAGGACGTGA
TCTTGGTGGAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAGGGCCATCCTTCCTAGGCAG
GGCTGTATCCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACATTTTTGAGATCCAGGCTCCT
TCCACCAGCAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGGGAGCTGCGCAGAGCCAGGA
AGCGCAAACACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTCACTCAAAAGAAACCTGTGA
CAATGAGAGTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCACCCTGCAGGAGCTGACACAT
ACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTCTCTGAACTACACTAAGATG
CTTTGCTCCAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCAATGGTGGAAAAGTTGGGGG
GACAAACTTCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTTTCTTGAATATCAGTACAGT
AAAGAGAAGTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTGCCTAACAAACAGCCTATTT
TCTGTGTGAACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAAGTGGTATTGTTCATTGTTC
AATCCTCAAGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAACTCTCTACCTTGTGCAACA
GTTGTCAACCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTGTGTTCCTAGATTAGATATA
AGAATAGACAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTGTATTTTTTCACCAAAATGT
ATGTTGTGGCCTTCTCTGTCAATAAATATATACATATATGTCAGCATCTA

hide sequence

RefSeq Acc Id:

XM_006257452 ⟹ XP_006257514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,223 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,481 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,591 - 122,811,790 (+)	NCBI
Rnor_5.0	X	122,958,348 - 122,961,547 (+)	NCBI

Sequence:

show sequence

ACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTATTCG
AATCCGGTTACCTGTGGTAGCAGCCTATCGAAGCGGAATCCGAGCTTGAATTCGGTGCAGTTGA
TTGTAGAGCTGGTCTTGATGTCCTGAACATCAGGTTTTGCGACCCCCAGTCGATCGAGGTCCAT
CAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGACACAGGCTACAGAGGCTGGAAAATACT
CGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTGCTGTACTGCTGAAGATAAAGCAGTTTT
TGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTAAGATATCCTATCACTGTTGTCAGAAAT
GGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGGCAGAACTCACCCCTGCCACCTTGGGCT
CATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTCCTTTAATGGCCAGCATGGCAGAGAGAA
ACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCAGGGGGAAGAAACCTTTGAAAACTGGCT
GAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATGCCTGAGGAGGAAAAGGTCAGGCGCCTA
ATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGCGTTTGCTCCAGGCTGCCAATCCCTGCC
TTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGTCTTTGGGGAGTCTGAGAGCAGTGTGAC
AGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCTGGAGAGAAACCATCCCTGTATGTGATC
CGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAGGGGTTTTTGCTGAGAGAGAGGCAAACC
AGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGATGAGTACTGACCTTCGATTCAGGCTTAA
GAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGCCTTCCCAATTTCCTGGAGTTAATCAGG
ATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTATTCATCCAAAGCGGCCCAGGAGATCCC
AGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAGCTCCCCACCAGTAATGATCAGCAGTAT
TGACTGCAATGTGATAGAGATAGATGACTCTCCTGATGATTCCGATGAGGACGTGATCTTGGTG
GAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAGGGCCATCCTTCCTAGGCAGGGCTGTAT
CCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACATTTTTGAGATCCAGGCTCCTTCCACCAG
CAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGGGAGCTGCGCAGAGCCAGGAAGCGCAAA
CACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTCACTCAAAAGAAACCTGTGACAATGAGA
GTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCACCCTGCAGGAGCTGACACATACAGAGGA
GAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTCTCTGAACTACACTAAGATGCTTTGCTC
CAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCAATGGTGGAAAAGTTGGGGGGACAAACT
TCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTTTCTTGAATATCAGTACAGTAAAGAGAA
GTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTGCCTAACAAACAGCCTATTTTCTGTGTG
AACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAAGTGGTATTGTTCATTGTTCAATCCTCA
AGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAACTCTCTACCTTGTGCAACAGTTGTCAA
CCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTGTGTTCCTAGATTAGATATAAGAATAGA
CAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTGTATTTTTTCACCAAAATGTATGTTGTG
GCCTTCTCTGTCAATAAATATATACATATATGTCAGCATCTA

hide sequence

RefSeq Acc Id:

XM_017602034 ⟹ XP_017457523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,241 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,486 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,588 - 122,811,790 (+)	NCBI

Sequence:

show sequence

CACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTAT
TCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGGTAGAATCCATAGCCGAAAACGCCGCA
ATATCCTCTGGCTACCAGAGGATAGCAGTAGCAGCCTATCGAAGCGGAATCCGAGCTTGAATTC
GGTGCAGTTGATTGTAGAGCTGGTCTTGATGTCCTGAACATCAGGTTTTGCGACCCCCAGTCGA
TCGAGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGACACAGGCTACAGAGGC
TGGAAAATACTCGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTGCTGTACTGCTGAAGAT
AAAGCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTAAGATATCCTATCACTG
TTGTCAGAAATGGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGGCAGAACTCACCCCTGC
CACCTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTCCTTTAATGGCCAGCAT
GGCAGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCAGGGGGAAGAAACCTTT
GAAAACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATGCCTGAGGAGGAAAAGG
TCAGGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGCGTTTGCTCCAGGCTGC
CAATCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGTCTTTGGGGAGTCTGAG
AGCAGTGTGACAGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCTGGAGAGAAACCATCCC
TGTATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAGGGGTTTTTGCTGAGAG
AGAGGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGATGAGTACTGACCTTCGA
TTCAGGCTTAAGAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGCCTTCCCAATTTCCTGG
AGTTAATCAGGATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTATTCATCCAAAGCGGCC
CAGGAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAGCTCCCCACCAGTAATG
ATCAGCAGTATTGACTGCAATGTGATAGAGATAGATGACTCTCCTGATGATTCCGATGAGGACG
TGATCTTGGTGGAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAGGGCCATCCTTCCTAGG
CAGGGCTGTATCCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACATTTTTGAGATCCAGGCT
CCTTCCACCAGCAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGGGAGCTGCGCAGAGCCA
GGAAGCGCAAACACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTCACTCAAAAGAAACCTG
TGACAATGAGAGTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCACCCTGCAGGAGCTGACA
CATACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTCTCTGAACTACACTAAG
ATGCTTTGCTCCAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCAATGGTGGAAAAGTTGG
GGGGACAAACTTCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTTTCTTGAATATCAGTAC
AGTAAAGAGAAGTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTGCCTAACAAACAGCCTA
TTTTCTGTGTGAACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAAGTGGTATTGTTCATTG
TTCAATCCTCAAGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAACTCTCTACCTTGTGCA
ACAGTTGTCAACCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTGTGTTCCTAGATTAGAT
ATAAGAATAGACAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTGTATTTTTTCACCAAAA
TGTATGTTGTGGCCTTCTCTGTCAATAAATATATACATATATGTCAGCATCTA

hide sequence

RefSeq Acc Id:

XM_017602035 ⟹ XP_017457524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,285 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,452 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,588 - 122,811,790 (+)	NCBI

Sequence:

show sequence

CACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTAT
TCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGCAGCCTATCGAAGCGGAATCCGAGCTT
GAATTCGGTGCAGTTGATTGTAGAGCTGGGTAGGCTAATGTCTTGATGTCCTGAACATCAGGTT
TTGCGACCCCCAGTCGATCGAGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGG
ACACAGGCTACAGAGGCTGGAAAATACTCGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACT
GCTGTACTGCTGAAGATAAAGCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATT
AAGATATCCTATCACTGTTGTCAGAAATGGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGG
GCAGAACTCACCCCTGCCACCTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGT
CCTTTAATGGCCAGCATGGCAGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCC
AGGGGGAAGAAACCTTTGAAAACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATAT
GCCTGAGGAGGAAAAGGTCAGGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATG
CGTTTGCTCCAGGCTGCCAATCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGG
TCTTTGGGGAGTCTGAGAGCAGTGTGACAGCCCACAGTAAATTTGTTAACACTGTTCAGGAACC
TGGAGAGAAACCATCCCTGTATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCA
GGGGTTTTTGCTGAGAGAGAGGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGA
TGAGTACTGACCTTCGATTCAGGCTTAAGAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCG
CCTTCCCAATTTCCTGGAGTTAATCAGGATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTT
ATTCATCCAAAGCGGCCCAGGAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGA
GCTCCCCACCAGTAATGATCAGCAGTATTGACTGCAATGTGATAGAGATAGATGACTCTCCTGA
TGATTCCGATGAGGACGTGATCTTGGTGGAGCCTGACGACCCACCACTGCCATCCTCAAGTGCA
GGGCCATCCTTCCTAGGCAGGGCTGTATCCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACA
TTTTTGAGATCCAGGCTCCTTCCACCAGCAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGG
GGAGCTGCGCAGAGCCAGGAAGCGCAAACACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGT
CACTCAAAAGAAACCTGTGACAATGAGAGTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCA
CCCTGCAGGAGCTGACACATACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCT
CTCTGAACTACACTAAGATGCTTTGCTCCAGCCTTAAATTAACCCTTACCCGTATTAAATGTTC
AATGGTGGAAAAGTTGGGGGGACAAACTTCTAATTGCATGAACAAACCCACAAAGTAGCTTTCT
TTCTTGAATATCAGTACAGTAAAGAGAAGTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACT
GCCTAACAAACAGCCTATTTTCTGTGTGAACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAA
AGTGGTATTGTTCATTGTTCAATCCTCAAGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGA
ACTCTCTACCTTGTGCAACAGTTGTCAACCCTTTGGTGCCTATCCTAAATATTTCTCTATATCT
GTGTTCCTAGATTAGATATAAGAATAGACAAATGTGATCAAATAGAAGTGTTGTTCTATATGCT
GTATTTTTTCACCAAAATGTATGTTGTGGCCTTCTCTGTCAATAAATATATACATATATGTCAG
CATCTA

hide sequence

RefSeq Acc Id:

XM_017602036 ⟹ XP_017457525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,266 - 120,302,465 (+)	NCBI
mRatBN7.2	X	115,433,486 - 115,436,691 (+)	NCBI
Rnor_6.0	X	122,808,588 - 122,811,790 (+)	NCBI

Sequence:

show sequence

CACACTCTTTTGTGTCAGTAGGCTGCTGATAAAAGCTTTGCTGCTGCCCTGGGAACTGCGCTAT
TCGAATCCGGTTACCTGTGGGGCGACCGGACTCACAGGTAGAATCCATAGCCGAAAACGCCGCA
ATATCCTCTGGCTACCAGAGGATAGCAGTAGCAGCCTATCGAAGCGGAATCCGAGCTTGAATTC
GGTGCAGTTGATTGTAGAGCTGGGTAGGCTAATGTCTTGATGTCCTGAACATCAGGTTTTGCGA
CCCCCAGTCGATCGAGGTCCATCAGCTGTACCCTGGAGGCAAGCTTTCTCACGGGAGGACACAG
GCTACAGAGGCTGGAAAATACTCGTTTCCTAGCTGGTACCCTACTGAGATTGGAGACTGCTGTA
CTGCTGAAGATAAAGCAGTTTTTGTTTTGTTTCTAAAACGACTTGAGCATCGTGTATTAAGATA
TCCTATCACTGTTGTCAGAAATGGCTAGCATCCTTTCACGCATGGGTAACAGCCGGGGGCAGAA
CTCACCCCTGCCACCTTGGGCTCATTCCATGCTGAGGTCCCTGGGGAGGAGTCTTGGTCCTTTA
ATGGCCAGCATGGCAGAGAGAAACATGAAGCTGTTCTCTGGGAGGGCAGAGCCAGCCCAGGGGG
AAGAAACCTTTGAAAACTGGCTGAGCCAAGTAACTGCAGTGCTGCCTGATTGGCATATGCCTGA
GGAGGAAAAGGTCAGGCGCCTAATGAGAACCCTTAGAGGCCCTGCCCGGGAGGTCATGCGTTTG
CTCCAGGCTGCCAATCCCTGCCTTGATGTAGAGGATTTTTTGCGTGCAATGAAACTGGTCTTTG
GGGAGTCTGAGAGCAGTGTGACAGCCCACAGTAAATTTGTTAACACTGTTCAGGAACCTGGAGA
GAAACCATCCCTGTATGTGATCCGTTTAGAGGTGCAGCTGCAGAATGCTATCCAGGCAGGGGTT
TTTGCTGAGAGAGAGGCAAACCAGGCTCGCCTGCACCAGCTCCTGGTAGGGGCTGAGATGAGTA
CTGACCTTCGATTCAGGCTTAAGAGTCTTCTCCGGGTATATGCAAATGAGCCAGAGCGCCTTCC
CAATTTCCTGGAGTTAATCAGGATGATAAGGGAGGAAGAGGAATGGGAGGAGGCTTTTATTCAT
CCAAAGCGGCCCAGGAGATCCCAGTCAGTGGAGAGGGCACTCAGCCCTACATTTCAGAGCTCCC
CACCAGTAATGATCAGCAGTATTGACTGCAATGTGATAGAGATAGATGACTCTCCTGATGATTC
CGATGAGGACGTGATCTTGGTGGAGCCTGACGACCCACCACTGCCATCCTCAAGTGCAGGGCCA
TCCTTCCTAGGCAGGGCTGTATCCGAGGACCAAGTGCTGGTCATTGAGTCCCCTAACATTTTTG
AGATCCAGGCTCCTTCCACCAGCAGTGGTGCTGGAAGGAAGAACAACAATAATTTTGGGGAGCT
GCGCAGAGCCAGGAAGCGCAAACACACAGTCCATTGTTCCCACTGTGGTGAGGAGGGTCACTCA
AAAGAAACCTGTGACAATGAGAGTGACAGGGGTCAGGTTTTTGAGAATCTGATCATCACCCTGC
AGGAGCTGACACATACAGAGGAGAGGGCAAGGGAGATCTTTGGAGAAGCCATTGGCCTCTCTGA
ACTACACTAAGATGCTTTGCTCCAGCCTTAAATTAACCCTTACCCGTATTAAATGTTCAATGGT
GGAAAAGTTGGGGGGACAAACTTCTAATTGCATGAACAAACCCACAAAGTAGCTTTCTTTCTTG
AATATCAGTACAGTAAAGAGAAGTGGCCTGACCTATGATCTTGTTCTCTTTCCCCACTGCCTAA
CAAACAGCCTATTTTCTGTGTGAACCTATCTCCTTGGTGGCTTTATTCTCTTTGTGAAAGTGGT
ATTGTTCATTGTTCAATCCTCAAGTAAGAAAAGTATTAAAAAGTACAAATTACCCAGAACTCTC
TACCTTGTGCAACAGTTGTCAACCCTTTGGTGCCTATCCTAAATATTTCTCTATATCTGTGTTC
CTAGATTAGATATAAGAATAGACAAATGTGATCAAATAGAAGTGTTGTTCTATATGCTGTATTT
TTTCACCAAAATGTATGTTGTGGCCTTCTCTGTCAATAAATATATACATATATGTCAGCATCTA

hide sequence

RefSeq Acc Id:

XM_063279985 ⟹ XP_063136055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,184 - 120,302,465 (+)	NCBI

RefSeq Acc Id:

XM_063279986 ⟹ XP_063136056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,269 - 120,302,465 (+)	NCBI

RefSeq Acc Id:

XM_063279987 ⟹ XP_063136057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,285 - 120,302,465 (+)	NCBI

RefSeq Acc Id:

XM_063279988 ⟹ XP_063136058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,299,269 - 120,302,465 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014087	(Get FASTA)	NCBI Sequence Viewer
	XP_006257510	(Get FASTA)	NCBI Sequence Viewer
	XP_006257511	(Get FASTA)	NCBI Sequence Viewer
	XP_006257513	(Get FASTA)	NCBI Sequence Viewer
	XP_006257514	(Get FASTA)	NCBI Sequence Viewer
	XP_017457523	(Get FASTA)	NCBI Sequence Viewer
	XP_017457524	(Get FASTA)	NCBI Sequence Viewer
	XP_017457525	(Get FASTA)	NCBI Sequence Viewer
	XP_063136055	(Get FASTA)	NCBI Sequence Viewer
	XP_063136056	(Get FASTA)	NCBI Sequence Viewer
	XP_063136057	(Get FASTA)	NCBI Sequence Viewer
	XP_063136058	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89115	(Get FASTA)	NCBI Sequence Viewer
	EDM10802	(Get FASTA)	NCBI Sequence Viewer
	EDM10803	(Get FASTA)	NCBI Sequence Viewer
	EDM10804	(Get FASTA)	NCBI Sequence Viewer
	EDM10805	(Get FASTA)	NCBI Sequence Viewer
	EDM10806	(Get FASTA)	NCBI Sequence Viewer
	EDM10807	(Get FASTA)	NCBI Sequence Viewer
	EDM10808	(Get FASTA)	NCBI Sequence Viewer
	EDM10809	(Get FASTA)	NCBI Sequence Viewer
	EDM10810	(Get FASTA)	NCBI Sequence Viewer
	EDM10811	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017567
	ENSRNOP00000017567.4
	ENSRNOP00000077726.1
	ENSRNOP00000079816
	ENSRNOP00000079816.1
	ENSRNOP00000090059.1
	ENSRNOP00055035193
	ENSRNOP00055035215
	ENSRNOP00055035221
	ENSRNOP00055035228
	ENSRNOP00060028809
	ENSRNOP00060028856
	ENSRNOP00060028871
	ENSRNOP00060028879
	ENSRNOP00065012352
	ENSRNOP00065012360
	ENSRNOP00065012364
	ENSRNOP00065012365
GenBank Protein	Q5HZA3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014087 ⟸ NM_001014065

- UniProtKB:

Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW
LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV
TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL
KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS
IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST
SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE
ERAREIFGEAIGLSELH

hide sequence

RefSeq Acc Id:	XP_006257511 ⟸ XM_006257449
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_006257510 ⟸ XM_006257448
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_006257513 ⟸ XM_006257451
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_006257514 ⟸ XM_006257452
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_017457525 ⟸ XM_017602036
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_017457523 ⟸ XM_017602034
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:	XP_017457524 ⟸ XM_017602035
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL), A6JME9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASILSRMGNSRGQNSPLPPWAHSMLRSLGRSLGPLMASMAERNMKLFSGRAEPAQGEETFENW LSQVTAVLPDWHMPEEEKVRRLMRTLRGPAREVMRLLQAANPCLDVEDFLRAMKLVFGESESSV TAHSKFVNTVQEPGEKPSLYVIRLEVQLQNAIQAGVFAEREANQARLHQLLVGAEMSTDLRFRL KSLLRVYANEPERLPNFLELIRMIREEEEWEEAFIHPKRPRRSQSVERALSPTFQSSPPVMISS IDCNVIEIDDSPDDSDEDVILVEPDDPPLPSSSAGPSFLGRAVSEDQVLVIESPNIFEIQAPST SSGAGRKNNNNFGELRRARKRKHTVHCSHCGEEGHSKETCDNESDRGQVFENLIITLQELTHTE ERAREIFGEAIGLSELH hide sequence

RefSeq Acc Id:

ENSRNOP00000017567 ⟸ ENSRNOT00000017567

RefSeq Acc Id:

ENSRNOP00000077726 ⟸ ENSRNOT00000094904

RefSeq Acc Id:

ENSRNOP00000079816 ⟸ ENSRNOT00000113244

RefSeq Acc Id:

ENSRNOP00000090059 ⟸ ENSRNOT00000111671

RefSeq Acc Id:	XP_063136055 ⟸ XM_063279985
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136056 ⟸ XM_063279986
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136058 ⟸ XM_063279988
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136057 ⟸ XM_063279987
- Peptide Label:	isoform X1
- UniProtKB:	Q5HZA3 (UniProtKB/Swiss-Prot), A6JME5 (UniProtKB/TrEMBL)

Protein Domains

CCHC-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5HZA3-F1-model_v2	AlphaFold	Q5HZA3	1-401	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701979

Promoter ID:

EPDNEW_R12502

Type:

single initiation site

Name:

Zcchc12_1

Description:

zinc finger CCHC-type containing 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	122,808,645 - 122,808,705	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359439	AgrOrtholog
BioCyc Gene	G2FUF-1323	BioCyc
Ensembl Genes	ENSRNOG00000013162	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055025029	UniProtKB/Swiss-Prot
	ENSRNOG00060020271	UniProtKB/Swiss-Prot
	ENSRNOG00065010115	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017567.5	UniProtKB/Swiss-Prot
	ENSRNOT00000094904.1	UniProtKB/Swiss-Prot
	ENSRNOT00000111671.1	UniProtKB/Swiss-Prot
	ENSRNOT00000113244.1	UniProtKB/Swiss-Prot
	ENSRNOT00055043133	UniProtKB/Swiss-Prot
	ENSRNOT00055043164	UniProtKB/Swiss-Prot
	ENSRNOT00055043169	UniProtKB/Swiss-Prot
	ENSRNOT00055043178	UniProtKB/Swiss-Prot
	ENSRNOT00060035060	UniProtKB/Swiss-Prot
	ENSRNOT00060035107	UniProtKB/Swiss-Prot
	ENSRNOT00060035121	UniProtKB/Swiss-Prot
	ENSRNOT00060035130	UniProtKB/Swiss-Prot
	ENSRNOT00065016292	UniProtKB/Swiss-Prot
	ENSRNOT00065016300	UniProtKB/Swiss-Prot
	ENSRNOT00065016304	UniProtKB/Swiss-Prot
	ENSRNOT00065016305	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7319855	IMAGE-MGC_LOAD
InterPro	PNMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PNMA_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:313436	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105777	IMAGE-MGC_LOAD
NCBI Gene	313436	ENTREZGENE
PANTHER	PARANEOPLASTIC ANTIGEN	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PNMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zcchc12	PhenoGen
PROSITE	ZF_CCHC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013162	RatGTEx
	ENSRNOG00055025029	RatGTEx
	ENSRNOG00060020271	RatGTEx
	ENSRNOG00065010115	RatGTEx
UniProt	A6JME5	ENTREZGENE, UniProtKB/TrEMBL
	A6JME9	ENTREZGENE, UniProtKB/TrEMBL
	Q5HZA3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zcchc12	zinc finger CCHC-type containing 12	Zcchc12	zinc finger, CCHC domain containing 12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Zcchc12	zinc finger, CCHC domain containing 12	LOC313436	similar to RIKEN cDNA 2810028A01	Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC313436	similar to RIKEN cDNA 2810028A01			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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