Minar2 (membrane integral NOTCH2 associated receptor 2) - Rat Genome Database

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Gene: Minar2 (membrane integral NOTCH2 associated receptor 2) Rattus norvegicus
Analyze
Symbol: Minar2
Name: membrane integral NOTCH2 associated receptor 2
RGD ID: 1312005
Description: Predicted to enable cholesterol binding activity. Predicted to be involved in angiogenesis. Predicted to act upstream of or within several processes, including exploration behavior; sensory perception of sound; and walking behavior. Predicted to be located in lysosomal membrane. Predicted to be active in endoplasmic reticulum and stereocilium. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness. Orthologous to human MINAR2 (membrane integral NOTCH2 associated receptor 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC291580; LOC291580; major intrinsically disordered NOTCH2-binding receptor 1-like; RGD1312005; similar to DD1; uncharacterized protein LOC291580; UPF0258 protein KIAA1024-like homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,737,670 - 54,752,388 (+)NCBIGRCr8
mRatBN7.21852,539,714 - 52,554,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,539,917 - 52,554,461 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,567,309 - 54,581,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01855,281,889 - 55,296,371 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01853,090,588 - 53,105,137 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01854,108,471 - 54,123,061 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1854,108,493 - 54,123,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,346,440 - 53,361,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,856,686 - 54,870,235 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,929,156 - 54,942,513 (+)NCBI
Celera1850,644,005 - 50,658,542 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Minar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,737,670 - 54,752,388 (+)NCBIGRCr8
mRatBN7.21852,539,714 - 52,554,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,539,917 - 52,554,461 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,567,309 - 54,581,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01855,281,889 - 55,296,371 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01853,090,588 - 53,105,137 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01854,108,471 - 54,123,061 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1854,108,493 - 54,123,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,346,440 - 53,361,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,856,686 - 54,870,235 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,929,156 - 54,942,513 (+)NCBI
Celera1850,644,005 - 50,658,542 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
MINAR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385129,748,094 - 129,766,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5129,748,094 - 129,766,732 (+)EnsemblGRCh38hg38GRCh38
GRCh375129,083,787 - 129,102,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365129,111,783 - 129,128,655 (+)NCBINCBI36Build 36hg18NCBI36
Celera5125,214,247 - 125,231,116 (+)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5124,275,579 - 124,292,449 (+)NCBIHuRef
CHM1_15128,516,482 - 128,533,358 (+)NCBICHM1_1
T2T-CHM13v2.05130,266,871 - 130,285,510 (+)NCBIT2T-CHM13v2.0
Minar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391859,195,264 - 59,210,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1859,195,320 - 59,210,034 (+)EnsemblGRCm39 Ensembl
GRCm381859,062,189 - 59,076,962 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1859,062,248 - 59,076,962 (+)EnsemblGRCm38mm10GRCm38
MGSCv371859,222,035 - 59,236,616 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361859,187,878 - 59,202,326 (+)NCBIMGSCv36mm8
Celera1860,372,082 - 60,383,212 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1833.9NCBI
Minar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554152,626,926 - 2,644,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554152,627,047 - 2,644,602 (+)NCBIChiLan1.0ChiLan1.0
MINAR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24125,058,379 - 125,077,947 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15123,197,941 - 123,217,509 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05125,163,230 - 125,182,801 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15131,335,020 - 131,351,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5131,335,020 - 131,353,934 (+)Ensemblpanpan1.1panPan2
MINAR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,506,042 - 18,531,187 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,507,059 - 18,524,589 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1117,305,450 - 17,332,029 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,260,965 - 19,287,961 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,262,163 - 19,282,883 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,985,402 - 18,012,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,819,766 - 17,844,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,433,417 - 18,460,805 (+)NCBIUU_Cfam_GSD_1.0
Minar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213141,256,345 - 141,273,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365042,830,236 - 2,847,847 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365042,830,286 - 2,847,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MINAR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2132,416,040 - 132,428,922 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12132,413,265 - 132,428,786 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,754,060 - 137,767,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MINAR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12332,655,661 - 32,672,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2332,655,735 - 32,674,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603445,337,139 - 45,354,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Minar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477411,607,504 - 11,623,544 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477411,607,603 - 11,623,582 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Minar2
133 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:590
Count of miRNA genes:276
Interacting mature miRNAs:343
Transcripts:ENSRNOT00000029239
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat

Markers in Region
D18Rat55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,539,763 - 52,539,863 (+)MAPPERmRatBN7.2
Rnor_6.01854,108,375 - 54,108,474NCBIRnor6.0
Rnor_5.01853,346,348 - 53,346,447UniSTSRnor5.0
RGSC_v3.41854,856,552 - 54,856,651UniSTSRGSC3.4
RGSC_v3.41854,856,551 - 54,856,651RGDRGSC3.4
RGSC_v3.11854,928,784 - 54,928,883RGD
Celera1850,643,852 - 50,643,951UniSTS
RH 3.4 Map18497.9RGD
RH 3.4 Map18497.9UniSTS
RH 2.0 Map18411.9RGD
SHRSP x BN Map1822.7899RGD
FHH x ACI Map1831.46RGD
Cytogenetic Map18q12.1UniSTS
D18Got52  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,548,850 - 52,549,031 (+)MAPPERmRatBN7.2
Rnor_6.01854,117,447 - 54,117,627NCBIRnor6.0
Rnor_5.01853,355,420 - 53,355,600UniSTSRnor5.0
RGSC_v3.41854,865,624 - 54,865,805RGDRGSC3.4
RGSC_v3.41854,865,625 - 54,865,805UniSTSRGSC3.4
RGSC_v3.11854,937,857 - 54,938,037RGD
Celera1850,652,927 - 50,653,108UniSTS
RH 3.4 Map18491.8UniSTS
RH 3.4 Map18491.8RGD
RH 2.0 Map18413.7RGD
Cytogenetic Map18q12.1UniSTS
RH134741  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,554,277 - 52,554,448 (+)MAPPERmRatBN7.2
Rnor_6.01854,122,874 - 54,123,044NCBIRnor6.0
Rnor_5.01853,360,847 - 53,361,017UniSTSRnor5.0
RGSC_v3.41854,871,052 - 54,871,222UniSTSRGSC3.4
Celera1850,658,355 - 50,658,525UniSTS
RH 3.4 Map18496.6UniSTS
Cytogenetic Map18q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 16 28
Low 3 35 17 10 7 10 13 13 11
Below cutoff 8 36 27 12 27 6 8 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029239   ⟹   ENSRNOP00000029403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1852,539,917 - 52,554,461 (+)Ensembl
Rnor_6.0 Ensembl1854,108,493 - 54,123,049 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079217   ⟹   ENSRNOP00000071088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1852,539,936 - 52,554,461 (+)Ensembl
Rnor_6.0 Ensembl1854,113,033 - 54,123,049 (+)Ensembl
RefSeq Acc Id: NM_001106144   ⟹   NP_001099614
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,853 - 54,752,388 (+)NCBI
mRatBN7.21852,539,917 - 52,554,465 (+)NCBI
Rnor_6.01854,108,528 - 54,123,061 (+)NCBI
Rnor_5.01853,346,440 - 53,361,034 (+)NCBI
RGSC_v3.41854,856,686 - 54,870,235 (+)RGD
Celera1850,644,005 - 50,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254754   ⟹   XP_006254816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,820 - 54,752,388 (+)NCBI
mRatBN7.21852,539,865 - 52,554,465 (+)NCBI
Rnor_6.01854,108,471 - 54,123,061 (+)NCBI
Rnor_5.01853,346,440 - 53,361,034 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096688   ⟹   XP_038952616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,772 - 54,747,601 (+)NCBI
mRatBN7.21852,539,716 - 52,549,678 (+)NCBI
RefSeq Acc Id: XM_039096689   ⟹   XP_038952617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,741,246 - 54,752,388 (+)NCBI
mRatBN7.21852,540,089 - 52,554,465 (+)NCBI
RefSeq Acc Id: XM_039096695   ⟹   XP_038952623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,670 - 54,747,601 (+)NCBI
mRatBN7.21852,539,714 - 52,549,678 (+)NCBI
RefSeq Acc Id: XM_039096696   ⟹   XP_038952624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,778 - 54,747,601 (+)NCBI
mRatBN7.21852,539,795 - 52,549,747 (+)NCBI
RefSeq Acc Id: XM_063277209   ⟹   XP_063133279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,818 - 54,752,388 (+)NCBI
RefSeq Acc Id: XM_063277210   ⟹   XP_063133280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,741,246 - 54,752,388 (+)NCBI
RefSeq Acc Id: XM_063277211   ⟹   XP_063133281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,737,771 - 54,747,601 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099614   ⟸   NM_001106144
- UniProtKB: B2GUX6 (UniProtKB/TrEMBL),   F7EQ04 (UniProtKB/TrEMBL),   A6IX95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254816   ⟸   XM_006254754
- Peptide Label: isoform X2
- UniProtKB: B2GUX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071088   ⟸   ENSRNOT00000079217
RefSeq Acc Id: ENSRNOP00000029403   ⟸   ENSRNOT00000029239
RefSeq Acc Id: XP_038952623   ⟸   XM_039096695
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952616   ⟸   XM_039096688
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952624   ⟸   XM_039096696
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038952617   ⟸   XM_039096689
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZK9 (UniProtKB/TrEMBL),   A6IX97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133281   ⟸   XM_063277211
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063133279   ⟸   XM_063277209
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133280   ⟸   XM_063277210
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZK9 (UniProtKB/TrEMBL),   A6IX97 (UniProtKB/TrEMBL)
Protein Domains
Major intrinsically disordered Notch2-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7EQ04-F1-model_v2 AlphaFold F7EQ04 1-193 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312005 AgrOrtholog
BioCyc Gene G2FUF-7393 BioCyc
Ensembl Genes ENSRNOG00000022429 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029239 ENTREZGENE
  ENSRNOT00000029239.7 UniProtKB/TrEMBL
  ENSRNOT00000079217.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8363471 IMAGE-MGC_LOAD
InterPro MINAR1-like UniProtKB/TrEMBL
  UPF0258 UniProtKB/TrEMBL
KEGG Report rno:291580 UniProtKB/TrEMBL
MGC_CLONE MGC:187590 IMAGE-MGC_LOAD
NCBI Gene 291580 ENTREZGENE
PANTHER MAJOR INTRINSICALLY DISORDERED NOTCH2-BINDING RECEPTOR 1-LIKE UniProtKB/TrEMBL
  PTHR31530 UniProtKB/TrEMBL
Pfam UPF0258 UniProtKB/TrEMBL
PhenoGen Minar2 PhenoGen
RatGTEx ENSRNOG00000022429 RatGTEx
UniProt A0A0G2JZK9 ENTREZGENE, UniProtKB/TrEMBL
  A6IX95 ENTREZGENE, UniProtKB/TrEMBL
  A6IX97 ENTREZGENE, UniProtKB/TrEMBL
  B2GUX6 ENTREZGENE, UniProtKB/TrEMBL
  F7EQ04 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-15 Minar2  membrane integral NOTCH2 associated receptor 2  RGD1312005  similar to DD1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1312005  similar to DD1   RGD1312005_predicted  similar to DD1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1312005_predicted  similar to DD1 (predicted)  LOC291580_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291580_predicted  similar to DD1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL