Faf2 (Fas associated factor family member 2) - Rat Genome Database

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Gene: Faf2 (Fas associated factor family member 2) Rattus norvegicus
Analyze
Symbol: Faf2
Name: Fas associated factor family member 2
RGD ID: 1306577
Description: Predicted to enable several functions, including enzyme binding activity; lipase inhibitor activity; and ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; retrograde protein transport, ER to cytosol; and stress granule disassembly. Predicted to act upstream of or within lipid droplet organization. Predicted to be located in lipid droplet. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Predicted to be active in endoplasmic reticulum. Orthologous to human FAF2 (Fas associated factor family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210404d11rik; FAS-associated factor 2; LOC291000; MGC108962; protein expressed in T-cells and eosinophils in atopic dermatitis; RGD1306577; similar to RIKEN cDNA 2210404D11; UBX domain containing 8; UBX domain-containing protein 8; Ubxd8
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,952,329 - 9,994,596 (-)NCBIGRCr8
mRatBN7.2179,947,211 - 9,989,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,947,220 - 9,989,485 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,961,656 - 10,003,682 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,495,078 - 11,537,125 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,958,092 - 10,000,115 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,485,650 - 10,527,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,485,642 - 10,527,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,611,437 - 12,653,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,011,489 - 16,051,440 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,011,489 - 16,051,440 (-)NCBI
Celera1710,024,573 - 10,062,663 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14741744   PMID:15489334   PMID:18775313   PMID:23297223   PMID:24215460   PMID:25660456   PMID:26692333  


Genomics

Comparative Map Data
Faf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,952,329 - 9,994,596 (-)NCBIGRCr8
mRatBN7.2179,947,211 - 9,989,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,947,220 - 9,989,485 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,961,656 - 10,003,682 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,495,078 - 11,537,125 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,958,092 - 10,000,115 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,485,650 - 10,527,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,485,642 - 10,527,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,611,437 - 12,653,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,011,489 - 16,051,440 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,011,489 - 16,051,440 (-)NCBI
Celera1710,024,573 - 10,062,663 (-)NCBICelera
Cytogenetic Map17p14NCBI
FAF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,448,385 - 176,510,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5176,447,628 - 176,510,074 (+)EnsemblGRCh38hg38GRCh38
GRCh375175,875,386 - 175,937,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,807,962 - 175,869,681 (+)NCBINCBI36Build 36hg18NCBI36
Celera5172,564,653 - 172,626,310 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,799,773 - 170,861,507 (+)NCBIHuRef
CHM1_15175,308,267 - 175,369,883 (+)NCBICHM1_1
T2T-CHM13v2.05176,992,793 - 177,054,650 (+)NCBIT2T-CHM13v2.0
Faf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,769,597 - 54,811,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,769,597 - 54,811,876 (+)EnsemblGRCm39 Ensembl
GRCm381354,621,784 - 54,664,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,621,784 - 54,664,063 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,723,145 - 54,765,424 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,631,441 - 54,673,685 (+)NCBIMGSCv36mm8
Celera1355,687,533 - 55,729,876 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.88NCBI
Faf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,737,279 - 28,797,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,737,597 - 28,797,143 (+)NCBIChiLan1.0ChiLan1.0
FAF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,525,358 - 171,587,028 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15169,664,897 - 169,726,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05171,743,071 - 171,804,687 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15178,813,998 - 178,875,208 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5178,814,100 - 178,876,108 (+)Ensemblpanpan1.1panPan2
FAF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,819,754 - 36,890,901 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,822,735 - 36,890,839 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,768,219 - 36,858,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,167,583 - 37,258,767 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,185,639 - 37,258,704 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,993,390 - 37,084,488 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,181,225 - 37,271,902 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,689,358 - 37,780,696 (-)NCBIUU_Cfam_GSD_1.0
Faf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,685,230 - 121,747,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936597710,100 - 772,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936597710,168 - 772,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,401,859 - 81,454,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1281,401,852 - 81,454,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,006,522 - 83,055,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,421,558 - 78,515,671 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,456,545 - 78,516,245 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660759,587,142 - 9,648,555 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Faf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473313,608,360 - 13,674,175 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473313,608,993 - 13,674,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Faf2
173 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:243
Count of miRNA genes:156
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000064477
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat

Markers in Region
RH134439  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,949,687 - 9,949,872 (+)MAPPERmRatBN7.2
Rnor_6.01710,488,122 - 10,488,306NCBIRnor6.0
Rnor_5.01712,613,909 - 12,614,093UniSTSRnor5.0
RGSC_v3.41716,011,645 - 16,011,829UniSTSRGSC3.4
Celera1710,024,729 - 10,024,913UniSTS
RH 3.4 Map1792.3UniSTS
Cytogenetic Map17p14UniSTS
RH142910  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,952,171 - 9,952,277 (+)MAPPERmRatBN7.2
Rnor_6.01710,490,606 - 10,490,711NCBIRnor6.0
Rnor_5.01712,616,393 - 12,616,498UniSTSRnor5.0
RGSC_v3.41716,014,129 - 16,014,234UniSTSRGSC3.4
Celera1710,027,213 - 10,027,318UniSTS
RH 3.4 Map1789.6UniSTS
Cytogenetic Map17p14UniSTS
RH138786  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,958,281 - 9,958,490 (+)MAPPERmRatBN7.2
Rnor_6.01710,496,712 - 10,496,920NCBIRnor6.0
Rnor_5.01712,622,499 - 12,622,707UniSTSRnor5.0
RGSC_v3.41716,020,236 - 16,020,444UniSTSRGSC3.4
Celera1710,033,322 - 10,033,530UniSTS
RH 3.4 Map1789.6UniSTS
Cytogenetic Map17p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 57 41 19 41 74 35 41 11
Low 17 8 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064477   ⟹   ENSRNOP00000063246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,949,533 - 9,989,417 (-)Ensembl
Rnor_6.0 Ensembl1710,487,967 - 10,527,839 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091837   ⟹   ENSRNOP00000068627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,947,220 - 9,989,411 (-)Ensembl
Rnor_6.0 Ensembl1710,485,642 - 10,527,864 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095037   ⟹   ENSRNOP00000080533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,947,220 - 9,989,411 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096763   ⟹   ENSRNOP00000086396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,947,220 - 9,989,485 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119973   ⟹   ENSRNOP00000088680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,947,220 - 9,962,946 (-)Ensembl
RefSeq Acc Id: NM_001017445   ⟹   NP_001017445
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,952,329 - 9,994,541 (-)NCBI
mRatBN7.2179,947,211 - 9,989,428 (-)NCBI
Rnor_6.01710,487,966 - 10,527,839 (-)NCBI
Rnor_5.01712,611,437 - 12,653,503 (-)NCBI
RGSC_v3.41716,011,489 - 16,051,440 (-)RGD
Celera1710,024,573 - 10,062,663 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399396   ⟹   NP_001386325
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,952,329 - 9,994,541 (-)NCBI
mRatBN7.2179,947,211 - 9,989,428 (-)NCBI
RefSeq Acc Id: XM_008771488   ⟹   XP_008769710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,952,329 - 9,994,596 (-)NCBI
mRatBN7.2179,947,216 - 9,989,474 (-)NCBI
Rnor_6.01710,485,650 - 10,527,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063276148   ⟹   XP_063132218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,952,329 - 9,977,237 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001017445   ⟸   NM_001017445
- Peptide Label: isoform 2
- UniProtKB: Q5BK32 (UniProtKB/Swiss-Prot),   A0A0G2JTA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769710   ⟸   XM_008771488
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZPX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068627   ⟸   ENSRNOT00000091837
RefSeq Acc Id: ENSRNOP00000063246   ⟸   ENSRNOT00000064477
RefSeq Acc Id: ENSRNOP00000088680   ⟸   ENSRNOT00000119973
RefSeq Acc Id: ENSRNOP00000080533   ⟸   ENSRNOT00000095037
RefSeq Acc Id: ENSRNOP00000086396   ⟸   ENSRNOT00000096763
RefSeq Acc Id: NP_001386325   ⟸   NM_001399396
- Peptide Label: isoform 1
- UniProtKB: A6KAX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132218   ⟸   XM_063276148
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A8N6 (UniProtKB/TrEMBL)
Protein Domains
UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BK32-F1-model_v2 AlphaFold Q5BK32 1-346 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700319
Promoter ID:EPDNEW_R10843
Type:initiation region
Name:Faf2_1
Description:Fas associated factor family member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01710,527,850 - 10,527,910EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306577 AgrOrtholog
BioCyc Gene G2FUF-10177 BioCyc
Ensembl Genes ENSRNOG00000017607 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055014139 UniProtKB/Swiss-Prot
  ENSRNOG00060016947 UniProtKB/Swiss-Prot
  ENSRNOG00065022453 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000064477 ENTREZGENE
  ENSRNOT00000064477.3 UniProtKB/Swiss-Prot
  ENSRNOT00000091837.2 UniProtKB/TrEMBL
  ENSRNOT00000095037.1 UniProtKB/TrEMBL
  ENSRNOT00000096763.1 UniProtKB/TrEMBL
  ENSRNOT00000119973.1 UniProtKB/TrEMBL
  ENSRNOT00055024303 UniProtKB/Swiss-Prot
  ENSRNOT00060029040 UniProtKB/Swiss-Prot
  ENSRNOT00065038304 UniProtKB/Swiss-Prot
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108443 IMAGE-MGC_LOAD
  IMAGE:7128668 IMAGE-MGC_LOAD
InterPro FAF1_2-like_UAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBX_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291000 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108962 IMAGE-MGC_LOAD
  MGC:94816 IMAGE-MGC_LOAD
NCBI Gene 291000 ENTREZGENE
PANTHER FAS-ASSOCIATED FACTOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAS-ASSOCIATED PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA_4 UniProtKB/TrEMBL
  UBX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Faf2 PhenoGen
PROSITE UBX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017607 RatGTEx
  ENSRNOG00055014139 RatGTEx
  ENSRNOG00060016947 RatGTEx
  ENSRNOG00065022453 RatGTEx
SMART UAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JTA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GGH0_RAT UniProtKB/TrEMBL
  A6KAX9 ENTREZGENE, UniProtKB/TrEMBL
  FAF2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-08-29 Faf2  Fas associated factor family member 2  Ubxd8  UBX domain containing 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ubxd8  UBX domain containing 8  RGD1306577  similar to RIKEN cDNA 2210404D11  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1306577  similar to RIKEN cDNA 2210404D11  RGD1306577_predicted  similar to RIKEN cDNA 2210404D11 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306577_predicted  similar to RIKEN cDNA 2210404D11 (predicted)  LOC291000_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291000_predicted  similar to RIKEN cDNA 2210404D11 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL