Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | prostate cancer | | ISO | ABCE1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Malignant tumor of prostate | ClinVar | PMID:23265383 | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | prostate cancer | | ISO | ABCE1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Malignant tumor of prostate | ClinVar | PMID:23265383 | |
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# | Reference Title | Reference Citation |
1. | Adenosine triphosphate-binding cassette transporter genes up-regulation in untreated hepatocellular carcinoma is mediated by cellular microRNAs. | Borel F, etal., Hepatology. 2012 Mar;55(3):821-32. doi: 10.1002/hep.24682. Epub 2012 Jan 13. |
2. | An excess of rare genetic variation in ABCE1 among Yorubans and African-American individuals with HIV-1. | Crawford DC, etal., Genes Immun. 2009 Dec;10(8):715-21. doi: 10.1038/gene.2009.57. Epub 2009 Aug 6. |
3. | Structural view on recycling of archaeal and eukaryotic ribosomes after canonical termination and ribosome rescue. | Franckenberg S, etal., Curr Opin Struct Biol. 2012 Dec;22(6):786-96. doi: 10.1016/j.sbi.2012.08.002. Epub 2012 Sep 29. |
4. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
5. | The expression profile of ATP-binding cassette transporter genes in breast carcinoma. | Hlavac V, etal., Pharmacogenomics. 2013 Apr;14(5):515-29. doi: 10.2217/pgs.13.26. |
6. | The role of ABC transporters in progression and clinical outcome of colorectal cancer. | Hlavata I, etal., Mutagenesis. 2012 Mar;27(2):187-96. doi: 10.1093/mutage/ger075. |
7. | Rustless translation. | Hopfner KP, Biol Chem. 2012 Oct;393(10):1079-88. doi: 10.1515/hsz-2012-0196. |
8. | [Expression and clinical significance of ABCE1 in human lung adenocarcinoma]. | Liu DZ, etal., Zhonghua Zhong Liu Za Zhi. 2008 Apr;30(4):296-7. |
9. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
10. | GOA pipeline | RGD automated data pipeline |
11. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
12. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
13. | Comprehensive gene review and curation | RGD comprehensive gene curation |
Abce1 (Rattus norvegicus - Norway rat) |
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ABCE1 (Homo sapiens - human) |
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Abce1 (Mus musculus - house mouse) |
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Abce1 (Chinchilla lanigera - long-tailed chinchilla) |
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ABCE1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ABCE1 (Canis lupus familiaris - dog) |
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Abce1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ABCE1 (Sus scrofa - pig) |
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ABCE1 (Chlorocebus sabaeus - green monkey) |
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Abce1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Abce1
99 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH128283 |
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UniSTS:498297 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 57 | 41 | 19 | 41 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
Low | |||||||||||||
Below cutoff |
RefSeq Transcripts | NM_001108446 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006255407 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063278120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AY724536 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473972 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000024753 ⟹ ENSRNOP00000024753 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000118958 ⟹ ENSRNOP00000087185 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001108446 ⟹ NP_001101916 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006255407 ⟹ XP_006255469 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063278120 ⟹ XP_063134190 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001101916 | (Get FASTA) | NCBI Sequence Viewer |
XP_006255469 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063134190 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL92306 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000024753 | ||
ENSRNOP00000024753.6 | |||
ENSRNOP00000087185.1 |
RefSeq Acc Id: | NP_001101916 ⟸ NM_001108446 |
- UniProtKB: | A6IYH8 (UniProtKB/TrEMBL), A0A8I6GEV9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006255469 ⟸ XM_006255407 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6IYH8 (UniProtKB/TrEMBL), A0A8I6GEV9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000024753 ⟸ ENSRNOT00000024753 |
RefSeq Acc Id: | ENSRNOP00000087185 ⟸ ENSRNOT00000118958 |
RefSeq Acc Id: | XP_063134190 ⟸ XM_063278120 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZD23-F1-model_v2 | AlphaFold | D3ZD23 | 1-599 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701050 | ||||||||
Promoter ID: | EPDNEW_R11573 | ||||||||
Type: | initiation region | ||||||||
Name: | Abce1_1 | ||||||||
Description: | ATP binding cassette subfamily E member 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1305301 | AgrOrtholog |
BioCyc Gene | G2FUF-5959 | BioCyc |
Ensembl Genes | ENSRNOG00000018345 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000024753 | ENTREZGENE |
ENSRNOT00000024753.7 | UniProtKB/TrEMBL | |
ENSRNOT00000118958.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/TrEMBL |
InterPro | 4Fe4S_Fe-S-bd | UniProtKB/TrEMBL |
4Fe4S_Fe_S_CS | UniProtKB/TrEMBL | |
ABC_E | UniProtKB/TrEMBL | |
ABC_transporter-like | UniProtKB/TrEMBL | |
ABC_transporter_CS | UniProtKB/TrEMBL | |
ATPase_AAA+_core | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
RLI_dom_1 | UniProtKB/TrEMBL | |
RNaseL-inhib_metal-bd_dom | UniProtKB/TrEMBL | |
KEGG Report | rno:361390 | UniProtKB/TrEMBL |
NCBI Gene | 361390 | ENTREZGENE |
PANTHER | ATP-BINDING CASSETTE SUB-FAMILY E MEMBER 1 | UniProtKB/TrEMBL |
PTHR19248 | UniProtKB/TrEMBL | |
Pfam | ABC_tran | UniProtKB/TrEMBL |
Fer4 | UniProtKB/TrEMBL | |
RLI | UniProtKB/TrEMBL | |
PhenoGen | Abce1 | PhenoGen |
PRINTS | ABCEFAMILY | UniProtKB/TrEMBL |
PROSITE | 4FE4S_FER_1 | UniProtKB/TrEMBL |
4FE4S_FER_2 | UniProtKB/TrEMBL | |
ABC_TRANSPORTER_1 | UniProtKB/TrEMBL | |
ABC_TRANSPORTER_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000018345 | RatGTEx |
SMART | AAA | UniProtKB/TrEMBL |
Superfamily-SCOP | 4Fe-4S ferredoxins | UniProtKB/TrEMBL |
SSF52540 | UniProtKB/TrEMBL | |
UniProt | A0A8I6GEV9 | ENTREZGENE, UniProtKB/TrEMBL |
A6IYH8 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZD23_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2015-12-09 | Abce1 | ATP binding cassette subfamily E member 1 | Abce1 | ATP-binding cassette, subfamily E (OABP), member 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2010-11-16 | Abce1 | ATP-binding cassette, subfamily E (OABP), member 1 | Abce1 | ATP-binding cassette, sub-family E (OABP), member 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Abce1 | ATP-binding cassette, sub-family E (OABP), member 1 | Abce1_predicted | ATP-binding cassette, sub-family E (OABP), member 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Abce1_predicted | ATP-binding cassette, sub-family E (OABP), member 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |