Sanbr (SANT and BTB domain regulator of CSR) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Sanbr (SANT and BTB domain regulator of CSR) Rattus norvegicus
Analyze
Symbol: Sanbr
Name: SANT and BTB domain regulator of CSR
RGD ID: 1305110
Description: Predicted to enable identical protein binding activity. Predicted to be involved in isotype switching. Orthologous to human SANBR (SANT and BTB domain regulator of CSR); INTERACTS WITH aflatoxin B1; bisphenol A; manganese(II) chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC305579; LOC305579; RGD1305110; SANT and BTB domain regulator of class switch recombination; similar to KIAA1841 protein; uncharacterized protein KIAA1841 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,717,619 - 101,787,092 (-)NCBIGRCr8
mRatBN7.21497,516,652 - 97,585,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,516,413 - 97,581,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,848,795 - 101,917,792 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,093,152 - 103,162,145 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,564,718 - 99,633,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,305,343 - 108,376,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,305,418 - 108,372,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,141,200 - 105,211,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,466,526 - 104,536,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,495,362 - 104,555,339 (-)NCBI
Celera1496,493,622 - 96,561,785 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
isotype switching  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Sanbr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,717,619 - 101,787,092 (-)NCBIGRCr8
mRatBN7.21497,516,652 - 97,585,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,516,413 - 97,581,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,848,795 - 101,917,792 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,093,152 - 103,162,145 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,564,718 - 99,633,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,305,343 - 108,376,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,305,418 - 108,372,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,141,200 - 105,211,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,466,526 - 104,536,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,495,362 - 104,555,339 (-)NCBI
Celera1496,493,622 - 96,561,785 (-)NCBICelera
Cytogenetic Map14q22NCBI
SANBR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,065,871 - 61,138,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,065,871 - 61,138,034 (+)EnsemblGRCh38hg38GRCh38
GRCh37261,293,006 - 61,365,167 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,146,867 - 61,218,673 (+)NCBINCBI36Build 36hg18NCBI36
Celera261,136,600 - 61,208,762 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,033,863 - 61,106,176 (+)NCBIHuRef
CHM1_1261,223,592 - 61,295,700 (+)NCBICHM1_1
T2T-CHM13v2.0261,071,714 - 61,143,876 (+)NCBIT2T-CHM13v2.0
Sanbr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,514,949 - 23,596,409 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,514,961 - 23,583,631 (-)EnsemblGRCm39 Ensembl
GRCm381123,564,949 - 23,633,681 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,564,961 - 23,633,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,473,776 - 23,533,631 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,473,781 - 23,533,621 (-)NCBIMGSCv36mm8
Celera1125,695,626 - 25,755,514 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.33NCBI
Sanbr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,728,802 - 22,785,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,728,802 - 22,785,374 (-)NCBIChiLan1.0ChiLan1.0
SANBR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,237,578 - 65,311,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,241,518 - 65,315,312 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,157,551 - 61,229,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,298,792 - 62,369,817 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,299,121 - 62,369,817 (+)Ensemblpanpan1.1panPan2
SANBR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,143,971 - 61,195,058 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,123,655 - 61,193,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,030,572 - 61,084,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,149,335 - 62,203,748 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,149,396 - 62,203,592 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,852,129 - 61,906,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,136,889 - 62,190,918 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,432,281 - 62,486,639 (+)NCBIUU_Cfam_GSD_1.0
Sanbr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,940,781 - 21,992,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,578,484 - 6,630,513 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,578,538 - 6,629,610 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SANBR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,675,008 - 80,746,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,675,008 - 80,746,306 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,698,819 - 84,727,009 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SANBR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,865,697 - 45,920,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,864,838 - 45,920,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,876,997 - 65,935,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sanbr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833771,627 - 825,815 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833772,761 - 828,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sanbr
310 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000007385
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat

Markers in Region
BE098780  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,543,052 - 97,543,236 (+)MAPPERmRatBN7.2
Rnor_6.014108,334,031 - 108,334,214NCBIRnor6.0
Rnor_5.014105,168,971 - 105,169,154UniSTSRnor5.0
RGSC_v3.414104,493,084 - 104,493,267UniSTSRGSC3.4
Celera1496,519,987 - 96,520,170UniSTS
RH 3.4 Map14780.69UniSTS
Cytogenetic Map14q22UniSTS
GDB:437189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,517,490 - 97,517,920 (+)MAPPERmRatBN7.2
Rnor_6.014108,306,182 - 108,306,611NCBIRnor6.0
Rnor_5.014105,142,039 - 105,142,468UniSTSRnor5.0
RGSC_v3.414104,467,365 - 104,467,794UniSTSRGSC3.4
Celera1496,494,461 - 96,494,890UniSTS
Cytogenetic Map14p22UniSTS
Cytogenetic Map14q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 28 14 4 9 4 2 2 74 24 41 11 2
Low 3 15 43 37 10 37 6 9 11 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC128776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000085886   ⟹   ENSRNOP00000074352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1497,516,413 - 97,581,346 (-)Ensembl
Rnor_6.0 Ensembl14108,326,625 - 108,372,157 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088116   ⟹   ENSRNOP00000071734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1497,532,681 - 97,581,346 (-)Ensembl
Rnor_6.0 Ensembl14108,305,418 - 108,372,068 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091143   ⟹   ENSRNOP00000075048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1497,532,681 - 97,581,346 (-)Ensembl
Rnor_6.0 Ensembl14108,322,832 - 108,372,075 (-)Ensembl
RefSeq Acc Id: NM_001100971   ⟹   NP_001094441
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,717,794 - 101,786,940 (-)NCBI
mRatBN7.21497,516,652 - 97,585,806 (-)NCBI
Rnor_6.014108,305,343 - 108,376,566 (-)NCBI
Rnor_5.014105,141,200 - 105,211,616 (-)NCBI
RGSC_v3.414104,466,526 - 104,536,016 (-)RGD
Celera1496,493,622 - 96,561,785 (-)RGD
Sequence:
RefSeq Acc Id: NM_001414964   ⟹   NP_001401893
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,809 - 101,787,052 (-)NCBI
mRatBN7.21497,532,667 - 97,585,918 (-)NCBI
RefSeq Acc Id: XM_017599249   ⟹   XP_017454738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,787,092 (-)NCBI
mRatBN7.21497,532,669 - 97,585,954 (-)NCBI
Rnor_6.014108,321,360 - 108,376,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599251   ⟹   XP_017454740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,777,445 (-)NCBI
mRatBN7.21497,532,669 - 97,576,307 (-)NCBI
Rnor_6.014108,321,360 - 108,367,229 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092091   ⟹   XP_038948019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,786,808 (-)NCBI
mRatBN7.21497,532,669 - 97,585,679 (-)NCBI
RefSeq Acc Id: XM_039092096   ⟹   XP_038948024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,787,092 (-)NCBI
mRatBN7.21497,532,669 - 97,585,955 (-)NCBI
RefSeq Acc Id: XM_039092097   ⟹   XP_038948025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,777,489 (-)NCBI
mRatBN7.21497,532,669 - 97,576,357 (-)NCBI
RefSeq Acc Id: XM_063273268   ⟹   XP_063129338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,733,816 - 101,786,806 (-)NCBI
RefSeq Acc Id: XM_063273269   ⟹   XP_063129339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,717,619 - 101,786,805 (-)NCBI
RefSeq Acc Id: XM_063273270   ⟹   XP_063129340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,717,619 - 101,787,092 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001094441   ⟸   NM_001100971
- Peptide Label: isoform 1
- UniProtKB: A1A5R8 (UniProtKB/Swiss-Prot),   A0A0G2K7U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454738   ⟸   XM_017599249
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K7U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454740   ⟸   XM_017599251
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000075048   ⟸   ENSRNOT00000091143
RefSeq Acc Id: ENSRNOP00000074352   ⟸   ENSRNOT00000085886
RefSeq Acc Id: ENSRNOP00000071734   ⟸   ENSRNOT00000088116
RefSeq Acc Id: XP_038948024   ⟸   XM_039092096
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948019   ⟸   XM_039092091
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948025   ⟸   XM_039092097
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001401893   ⟸   NM_001414964
- Peptide Label: isoform 2
- UniProtKB: A0A8L2R4S9 (UniProtKB/TrEMBL),   A6JQ75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129340   ⟸   XM_063273270
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129339   ⟸   XM_063273269
- Peptide Label: isoform X2
- UniProtKB: A1A5R8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129338   ⟸   XM_063273268
- Peptide Label: isoform X1
Protein Domains
BTB   SANT   SANT and BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5R8-F1-model_v2 AlphaFold A1A5R8 1-737 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305110 AgrOrtholog
BioCyc Gene G2FUF-14767 BioCyc
Ensembl Genes ENSRNOG00000054669 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055004049 UniProtKB/Swiss-Prot
  ENSRNOG00060007362 UniProtKB/Swiss-Prot
  ENSRNOG00065005979 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000085886 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085886.2 UniProtKB/Swiss-Prot
  ENSRNOT00000088116 ENTREZGENE
  ENSRNOT00000088116.2 UniProtKB/TrEMBL
  ENSRNOT00000091143.2 UniProtKB/TrEMBL
  ENSRNOT00055006483 UniProtKB/Swiss-Prot
  ENSRNOT00060012129 UniProtKB/Swiss-Prot
  ENSRNOT00065009047 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133856 IMAGE-MGC_LOAD
InterPro DUF3342 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANBR-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305579 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156804 IMAGE-MGC_LOAD
NCBI Gene 305579 ENTREZGENE
PANTHER DUF3342 DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR20946 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3342 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sanbr PhenoGen
RatGTEx ENSRNOG00000054669 RatGTEx
  ENSRNOG00055004049 RatGTEx
  ENSRNOG00060007362 RatGTEx
  ENSRNOG00065005979 RatGTEx
UniProt A0A0G2K7U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K9M0_RAT UniProtKB/TrEMBL
  A0A8L2R4S9 ENTREZGENE, UniProtKB/TrEMBL
  A1A5R8 ENTREZGENE
  A6JQ75 ENTREZGENE, UniProtKB/TrEMBL
  K1841_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-12 Sanbr  SANT and BTB domain regulator of CSR  RGD1305110  similar to KIAA1841 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305110  similar to KIAA1841 protein   RGD1305110_predicted  similar to KIAA1841 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305110_predicted  similar to KIAA1841 protein (predicted)  LOC305579_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305579_predicted  similar to KIAA1841 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL