St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) - Rat Genome Database

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Gene: St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) Rattus norvegicus
Analyze
Symbol: St3gal6
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 6
RGD ID: 1303279
Description: Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to be involved in cellular response to interleukin-6; glycolipid biosynthetic process; and protein glycosylation. Predicted to be located in Golgi membrane. Orthologous to human ST3GAL6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CMP-NeuAc:beta-galactoside alpha-2,3-sialyltransferase VI; sialyltransferase 10 (alpha-2,3-sialyltransferase VI); Siat10; ST3Gal VI; ST3GalVI; type 2 lactosamine alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Celera1141,876,333 - 41,920,495 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
L-ethionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PD 0325901  (ISO)
perfluorohexanesulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
rimonabant  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zebularine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10206952   PMID:12477932   PMID:15843597   PMID:17944600   PMID:19199708   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
St3gal6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Celera1141,876,333 - 41,920,495 (+)NCBICelera
Cytogenetic Map11q12NCBI
ST3GAL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,732,262 - 98,795,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,732,236 - 98,821,201 (+)EnsemblGRCh38hg38GRCh38
GRCh37398,451,106 - 98,514,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,934,262 - 99,995,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 34399,934,261 - 99,995,924NCBI
Celera396,843,261 - 96,904,902 (+)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef395,823,269 - 95,886,702 (+)NCBIHuRef
CHM1_1398,414,233 - 98,477,819 (+)NCBICHM1_1
T2T-CHM13v2.03101,440,560 - 101,504,133 (+)NCBIT2T-CHM13v2.0
St3gal6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,290,105 - 58,344,614 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,288,488 - 58,344,606 (-)EnsemblGRCm39 Ensembl
GRCm381658,469,742 - 58,524,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,468,125 - 58,524,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv371658,470,654 - 58,523,425 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361658,413,084 - 58,465,855 (-)NCBIMGSCv36mm8
Celera1658,755,151 - 58,808,030 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.58NCBI
St3gal6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,682,241 - 96,748,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,687,012 - 96,754,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,833,529 - 95,897,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,515,153 - 102,579,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,515,185 - 102,578,843 (+)Ensemblpanpan1.1panPan2
ST3GAL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,572,228 - 5,631,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,604,628 - 5,630,703 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha335,722,885 - 5,791,963 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0335,710,802 - 5,780,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,711,625 - 5,766,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,583,701 - 5,665,729 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,646,526 - 5,716,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,923,257 - 5,992,594 (+)NCBIUU_Cfam_GSD_1.0
St3gal6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602151,328,232 - 151,383,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366304,226,115 - 4,280,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366304,226,539 - 4,281,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13160,158,259 - 160,224,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113160,158,238 - 160,225,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213170,305,811 - 170,328,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,059,441 - 82,126,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,059,457 - 82,108,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604184,429,806 - 84,495,181 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478911,822,905 - 11,857,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478911,782,895 - 11,858,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in St3gal6
228 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:330
Count of miRNA genes:215
Interacting mature miRNAs:255
Transcripts:ENSRNOT00000002255
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat

Markers in Region
BF387674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,095,278 - 42,095,462 (+)MAPPERmRatBN7.2
Rnor_6.01144,210,598 - 44,210,781NCBIRnor6.0
Rnor_5.01147,400,091 - 47,400,274UniSTSRnor5.0
RGSC_v3.41142,911,370 - 42,911,553UniSTSRGSC3.4
Celera1141,893,991 - 41,894,174UniSTS
RH 3.4 Map11310.8UniSTS
Cytogenetic Map11q12UniSTS
RH140152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,121,446 - 42,121,652 (+)MAPPERmRatBN7.2
Rnor_6.01144,236,771 - 44,236,976NCBIRnor6.0
Rnor_5.01147,426,264 - 47,426,469UniSTSRnor5.0
RGSC_v3.41142,937,455 - 42,937,660UniSTSRGSC3.4
Celera1141,920,158 - 41,920,363UniSTS
RH 3.4 Map11312.9UniSTS
Cytogenetic Map11q12UniSTS
RH141458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,120,807 - 42,121,024 (+)MAPPERmRatBN7.2
Rnor_6.01144,236,132 - 44,236,348NCBIRnor6.0
Rnor_5.01147,425,625 - 47,425,841UniSTSRnor5.0
RGSC_v3.41142,936,816 - 42,937,032UniSTSRGSC3.4
Celera1141,919,519 - 41,919,735UniSTS
RH 3.4 Map11312.9UniSTS
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 45 37 19 37 8 11 33 35 29 11 8
Low 1 12 4 4 41 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002255   ⟹   ENSRNOP00000002255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)Ensembl
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)Ensembl
RefSeq Acc Id: NM_207602   ⟹   NP_997485
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,546,788 - 55,590,950 (+)NCBI
mRatBN7.21142,077,621 - 42,121,784 (+)NCBI
Rnor_6.01144,192,940 - 44,237,108 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
RGSC_v3.41142,893,712 - 42,937,792 (+)RGD
Celera1141,876,333 - 41,920,495 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248209   ⟹   XP_006248271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,457 - 55,590,950 (+)NCBI
mRatBN7.21142,061,598 - 42,121,793 (+)NCBI
Rnor_6.01144,177,135 - 44,237,119 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248210   ⟹   XP_006248272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,372 - 55,590,950 (+)NCBI
mRatBN7.21142,061,282 - 42,121,793 (+)NCBI
Rnor_6.01144,176,518 - 44,237,119 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088384   ⟹   XP_038944312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,555,784 - 55,590,950 (+)NCBI
mRatBN7.21142,086,817 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088386   ⟹   XP_038944314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,555,784 - 55,590,950 (+)NCBI
mRatBN7.21142,086,817 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088387   ⟹   XP_038944315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,554,837 - 55,590,950 (+)NCBI
mRatBN7.21142,085,248 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088388   ⟹   XP_038944316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,760 - 55,586,868 (+)NCBI
mRatBN7.21142,061,586 - 42,117,703 (+)NCBI
RefSeq Acc Id: XM_039088389   ⟹   XP_038944317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,752 - 55,583,405 (+)NCBI
mRatBN7.21142,061,583 - 42,106,058 (+)NCBI
RefSeq Acc Id: XM_063270565   ⟹   XP_063126635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,120 - 55,590,950 (+)NCBI
RefSeq Acc Id: XM_063270566   ⟹   XP_063126636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,567,615 - 55,590,950 (+)NCBI
RefSeq Acc Id: XM_063270567   ⟹   XP_063126637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,424 - 55,583,405 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_997485   ⟸   NM_207602
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248272   ⟸   XM_006248210
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248271   ⟸   XM_006248209
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002255   ⟸   ENSRNOT00000002255
RefSeq Acc Id: XP_038944317   ⟸   XM_039088389
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944316   ⟸   XM_039088388
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944315   ⟸   XM_039088387
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944312   ⟸   XM_039088384
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944314   ⟸   XM_039088386
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126635   ⟸   XM_063270565
- Peptide Label: isoform X1
- UniProtKB: F7F9B2 (UniProtKB/TrEMBL),   Q569D2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126637   ⟸   XM_063270567
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126636   ⟸   XM_063270566
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61943-F1-model_v2 AlphaFold P61943 1-331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303279 AgrOrtholog
BioCyc Gene G2FUF-21567 BioCyc
Ensembl Genes ENSRNOG00000001653 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002255 ENTREZGENE
  ENSRNOT00000002255.6 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7308841 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304023 UniProtKB/TrEMBL
MGC_CLONE MGC:108513 IMAGE-MGC_LOAD
NCBI Gene 304023 ENTREZGENE
PANTHER SIALYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYPE 2 LACTOSAMINE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal6 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001653 RatGTEx
UniProt F7F9B2 ENTREZGENE, UniProtKB/TrEMBL
  P61943 ENTREZGENE
  Q569D2 ENTREZGENE, UniProtKB/TrEMBL
  SIA10_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 St3gal6  ST3 beta-galactoside alpha-2,3-sialyltransferase 6  Siat10  sialyltransferase 10 (alpha-2,3-sialyltransferase VI)  Symbol and Name updated 1299863 APPROVED
2005-09-30 Siat10        Symbol and Name status set to provisional 70820 PROVISIONAL