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Gene: Hp1bp3 (heterochromatin protein 1, binding protein 3) Rattus norvegicus

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Symbol:

Hp1bp3

Name:

heterochromatin protein 1, binding protein 3

RGD ID:

735099

Description:

Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be involved in several processes, including cellular response to hypoxia; heterochromatin organization; and regulation of nucleus size. Predicted to be located in nuclear speck. Predicted to be part of nucleosome. Predicted to be active in chromosome and nucleus. Orthologous to human HP1BP3 (heterochromatin protein 1 binding protein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; allethrin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

heterochromatin protein 1-binding protein 3; MGC72624; Unknown (protein for MGC:72624)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	155,719,109 - 155,746,329 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	155,719,115 - 155,746,325 (+)	Ensembl				GRCr8
mRatBN7.2	5	150,435,781 - 150,463,004 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	150,433,740 - 150,463,000 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	153,131,550 - 153,158,802 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	154,905,830 - 154,933,084 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	154,887,855 - 154,915,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	155,336,723 - 155,363,940 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	157,326,751 - 157,353,965 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	156,502,496 - 156,529,713 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	150,072,817 - 150,100,033 (+)	NCBI		F344_StmMcwi
Rnor_6.0	5	156,581,732 - 156,609,059 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,581,732 - 156,609,059 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	160,331,116 - 160,358,541 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	156,996,670 - 157,024,045 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	148,829,677 - 148,857,023 (+)	NCBI		Celera
RGSC_v3.1	5	157,006,708 - 157,034,082 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-dimethoxyphenol (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dibutyl phthalate (EXP)

dihydroartemisinin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

fenvalerate (EXP)

FR900359 (ISO)

furfural (ISO)

gentamycin (EXP)

hexane (EXP)

ivermectin (ISO)

lead diacetate (ISO)

lead(0) (ISO)

methapyrilene (EXP)

methylparaben (ISO)

nicotine (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pyrethrins (EXP)

rotenone (EXP)

sodium arsenate (ISO)

sodium chloride (ISO)

tert-butyl hydroperoxide (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

zinc protoporphyrin (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to hypoxia (IEA,ISO,ISS)

heterochromatin organization (IBA,IEA,ISO,ISS)

nucleosome assembly (IEA)

regulation of cell population proliferation (IEA,ISO,ISS)

regulation of DNA-templated transcription (IEA,ISO,ISS)

regulation of nucleus size (IEA,ISO,ISS)

Cellular Component

chromosome (IBA,IEA,ISO,ISS)

nuclear speck (IEA,ISO)

nucleosome (IEA)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

DNA binding (IBA,IEA,ISO,ISS)

nucleosome binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

structural constituent of chromatin (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors.	Le Douarin B, etal., EMBO J 1996 Dec 2;15(23):6701-15.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:20042602	PMID:21700703	PMID:24830416	PMID:25100860	PMID:25931508	PMID:30053369	PMID:33450132

Genomics

Comparative Map Data

Hp1bp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	155,719,109 - 155,746,329 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	155,719,115 - 155,746,325 (+)	Ensembl				GRCr8
mRatBN7.2	5	150,435,781 - 150,463,004 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	150,433,740 - 150,463,000 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	153,131,550 - 153,158,802 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	154,905,830 - 154,933,084 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	154,887,855 - 154,915,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	155,336,723 - 155,363,940 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	157,326,751 - 157,353,965 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	156,502,496 - 156,529,713 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	150,072,817 - 150,100,033 (+)	NCBI		F344_StmMcwi
Rnor_6.0	5	156,581,732 - 156,609,059 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,581,732 - 156,609,059 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	160,331,116 - 160,358,541 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	156,996,670 - 157,024,045 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	148,829,677 - 148,857,023 (+)	NCBI		Celera
RGSC_v3.1	5	157,006,708 - 157,034,082 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

HP1BP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	20,740,266 - 20,787,307 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	20,739,095 - 20,787,323 (-)	Ensembl			hg38	GRCh38
GRCh37	1	21,066,759 - 21,113,800 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	20,941,758 - 20,985,768 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	19,394,945 - 19,438,922 (-)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	19,314,898 - 19,359,180 (-)	NCBI		HuRef
CHM1_1	1	21,179,997 - 21,223,982 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	20,566,829 - 20,613,865 (-)	NCBI		T2T-CHM13v2.0

Hp1bp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	137,943,781 - 137,971,994 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	137,943,607 - 137,971,994 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	138,216,470 - 138,244,683 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	138,216,296 - 138,244,683 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	137,772,542 - 137,799,085 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	137,488,738 - 137,515,236 (+)	NCBI		MGSCv36	mm8
Celera	4	139,993,842 - 140,021,475 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.03	NCBI

Hp1bp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	1,270,658 - 1,308,167 (-)	Ensembl
ChiLan1.0	NW_004955452	1,271,133 - 1,308,167 (-)	NCBI	ChiLan1.0	ChiLan1.0

HP1BP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	206,337,978 - 206,382,863 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	205,449,905 - 205,494,800 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	19,691,173 - 19,736,062 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	20,736,259 - 20,780,690 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	20,736,259 - 20,780,690 (-)	Ensembl			panPan2	panpan1.1

HP1BP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	78,164,239 - 78,203,032 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	78,164,173 - 78,201,555 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	74,678,071 - 74,717,452 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	78,732,908 - 78,772,521 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	78,732,911 - 78,774,761 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	75,549,549 - 75,588,868 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	76,562,054 - 76,601,598 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	77,564,689 - 77,604,115 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hp1bp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	40,841,180 - 40,874,916 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	6,665,507 - 6,700,152 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	6,665,989 - 6,699,722 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HP1BP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	78,975,555 - 79,007,889 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	78,975,551 - 79,007,921 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	73,219,226 - 73,249,015 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HP1BP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	111,766,259 - 111,815,233 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	111,772,973 - 111,818,038 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	4,419,797 - 4,466,087 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hp1bp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	5,760,002 - 5,794,705 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hp1bp3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	19,974,110 - 20,001,372 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hp1bp3
145 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	844
Count of miRNA genes:	314
Interacting mature miRNAs:	411
Transcripts:	ENSRNOT00000019696
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

RH142369

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,462,497 - 150,462,680 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,608,553 - 156,608,735	NCBI	Rnor6.0
Rnor_5.0	5	160,358,035 - 160,358,217	UniSTS	Rnor5.0
RGSC_v3.4	5	157,023,539 - 157,023,721	UniSTS	RGSC3.4
Celera	5	148,856,517 - 148,856,699	UniSTS
RH 3.4 Map	5	1032.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

BF386150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,456,535 - 150,456,705 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,602,593 - 156,602,762	NCBI	Rnor6.0
Rnor_5.0	5	160,352,075 - 160,352,244	UniSTS	Rnor5.0
RGSC_v3.4	5	157,017,579 - 157,017,748	UniSTS	RGSC3.4
Celera	5	148,850,557 - 148,850,726	UniSTS
RH 3.4 Map	5	1032.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH94390

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	79,071,612 - 79,071,710 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	80,331,733 - 80,331,830	NCBI	Rnor6.0
Rnor_5.0	1	81,598,005 - 81,598,102	UniSTS	Rnor5.0
RGSC_v3.4	1	78,772,574 - 78,772,671	UniSTS	RGSC3.4
Celera	1	73,533,873 - 73,533,970	UniSTS
RH 3.4 Map	1	787.5	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH137507

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,462,377 - 150,462,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,608,433 - 156,608,601	NCBI	Rnor6.0
Rnor_5.0	5	160,357,915 - 160,358,083	UniSTS	Rnor5.0
RGSC_v3.4	5	157,023,419 - 157,023,587	UniSTS	RGSC3.4
Celera	5	148,856,397 - 148,856,565	UniSTS
RH 3.4 Map	5	1032.21	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH139085

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,462,674 - 150,462,836 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,608,730 - 156,608,891	NCBI	Rnor6.0
Rnor_5.0	5	160,358,212 - 160,358,373	UniSTS	Rnor5.0
RGSC_v3.4	5	157,023,716 - 157,023,877	UniSTS	RGSC3.4
Celera	5	148,856,694 - 148,856,855	UniSTS
RH 3.4 Map	5	1033.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH140026

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,434,712 - 150,434,906 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,580,658 - 156,580,851	NCBI	Rnor6.0
Rnor_5.0	5	160,330,042 - 160,330,235	UniSTS	Rnor5.0
RGSC_v3.4	5	156,995,596 - 156,995,789	UniSTS	RGSC3.4
Celera	5	148,828,603 - 148,828,796	UniSTS
RH 3.4 Map	5	1032.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH140380

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,434,760 - 150,434,906 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,580,706 - 156,580,851	NCBI	Rnor6.0
Rnor_5.0	5	160,330,090 - 160,330,235	UniSTS	Rnor5.0
RGSC_v3.4	5	156,995,644 - 156,995,789	UniSTS	RGSC3.4
Celera	5	148,828,651 - 148,828,796	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001436852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019696 ⟹ ENSRNOP00000019696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	155,719,628 - 155,744,943 (+)	Ensembl
mRatBN7.2 Ensembl	5	150,433,740 - 150,462,991 (+)	Ensembl
Rnor_6.0 Ensembl	5	156,587,093 - 156,607,673 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075852 ⟹ ENSRNOP00000067949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	155,719,115 - 155,746,325 (+)	Ensembl
mRatBN7.2 Ensembl	5	150,435,787 - 150,463,000 (+)	Ensembl
Rnor_6.0 Ensembl	5	156,603,725 - 156,609,059 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076772 ⟹ ENSRNOP00000068507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	155,719,397 - 155,746,316 (+)	Ensembl
mRatBN7.2 Ensembl	5	150,435,814 - 150,462,989 (+)	Ensembl
Rnor_6.0 Ensembl	5	156,581,732 - 156,598,234 (+)	Ensembl

RefSeq Acc Id:

NM_199108 ⟹ NP_954539

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,719,115 - 155,746,329 (+)	NCBI
mRatBN7.2	5	150,435,787 - 150,463,004 (+)	NCBI
Dahl_SR_JrHsd	5	155,336,723 - 155,363,940 (+)	NCBI
Lyon_Normotensive	5	157,326,751 - 157,353,965 (+)	NCBI
Lyon_Hypertensive	5	156,502,496 - 156,529,713 (+)	NCBI
F344_StmMcwi	5	150,072,817 - 150,100,033 (+)	NCBI
Rnor_6.0	5	156,581,732 - 156,609,059 (+)	NCBI
Rnor_5.0	5	160,331,116 - 160,358,541 (+)	NCBI
RGSC_v3.4	5	156,996,670 - 157,024,045 (+)	RGD
Celera	5	148,829,677 - 148,857,023 (+)	RGD

Sequence:

show sequence

GGCAGGGGGGCGGGGCGGCAGAGCTCGGTGCCCGGCCTGGAGGACAGCGGTGTCGGAGTCAGCG
ATCGGTGGTCCGCAGCAACGCTGAGGGGCCGTACGGGACGCGGGCGCCGGAGCTCAGAGGTTGA
CTCTTCACCACACTGAAGCCATTAGGAAACCCCTGTGATTAACAGCAGAGGCTTCAGAGTCTCA
CCAGTATTCAGGCCTAGACTTTATTTTAAATGGCAACTGATATGTCTCAAGGTGAACTCATCCA
TCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAA
GCAGACGATAGCACCATGCCTATCCGTCGGGCTGTGAATTCTACTCGGGAAACTCCGCCCAAAA
GCAAACTTGCTGAAGGGGAAGAAGAAAAACCAGAACCAGATGGGAGTTCAGAGGAGTCTATCTC
TACGGTAGAAGAACCAGAGAATGAGACTCCACCTGCTCCATCCAGGGAGGCAGAGCAGCCCAAG
GGGGAGCCTGAGAGTGGAGAGAAGGAAGAGAGCAAGTCTGCTGAGGAAACCAAGAAAGAAGAGA
AGGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAGAAAACCATCCCTGCCTGGGCCACTCTGTC
TGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACCCCAATGGCTTCCTCCCCACGGCCAAAGATG
GATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGCGGTGCCTCCGTGGTTGCTA
TCCGGAAGTACATCATTCATAAGTACCCTTCTCTGGATCTGGAGAGAAGGGGCTATCTCCTCAA
GCAAGCACTGAAAAGAGAGTTAAACAGAGGAGTCATCAAACAGGTAAAAGGAAAAGGTGCATCT
GGCAGTTTTGTCGTGGTCCAGAAATCAAAAACACCTCAGAAATCCAAAAACAGAAAGAAGGGCT
CTGCAGTGGATCCAGAACCACAAGTAAAACTGGAAGATGTTCTCCCATTGGCTTTTACCCGACT
CTGTGAACCTAAGGAAGCCTCCTACAGTCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAG
CTTCGAGTGGACATCAGGCCCCAGTTGTTGAAGAATGCTCTGCAGAGAGCAGTGGAGAGAGGCC
AGTTAGAGCAGATAACTGGCAAGGGTGCTTCGGGGACATTCCAGCTGAAGAAATCCGGGGAGAA
ACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCATGAATGAA
CCTAAGACCTGCTCCACCACTGCTCTGAAGAAGTATGTCCTGGAGAACCACCCAGGGACCAATT
CTAACTACCAAATGCATTTGCTGAAAAAAACTCTGCAGAAATGTGAGAAGAATGGGTGGCTGGA
GCAGATCTCTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTGCTTCCCCTATTACCCCAGCCCA
GGAGTTCTGTTTCCAAAGAAAGTGTCAGATGGCTCTGAGGATGAGGATGAGGAGGAGGATGAAG
AGGAGTCATCAGAGGACTCTGAGGATGAAGAGCCGCCACCCAAGAGGAGCTTACAGAAGAAAAC
ACCAGCCAAGCCCCAAGGGAAGACGGCCTCCATGAAGCAGAGAGGGGCTAAGCCTGCGCGTAAA
GTCCCTGCTGCCCAGAGAGGGAAGGTGAGGCCGCTGCCTAAGAAAGCTCCGCCCAAGGCTAAGA
CCCCTGCCAGGAAAGGCAGACCCGCACCCTCAGCTGTCAAGAAGCCTAGCGGGAGCACCTCCAA
AAAGCCCGTAGCCAATGCACGAAAGGAAGCGAAACTGCCCGGTAAGGGTAAATCTGCCATGAAG
AAGAAGTCTTTCAAGACAAAAAAGTAAATTTTATAGGAAAAAGGGTATCATGATTGAATTCAGA
ATCTTATTTTATAAGGTCAGTGTGCATTTGTTTTAGTTATAATGCTTTTAAATTTTACATTTTT
CTTCCCATACGAACACTGTGGGAAGGAATGTAAACAAACCAGTGTAGACATTTGTTGGCTTAGG
TGCTGTTCTCAGTGCCTGCTTCTTCATCATTTTAATTTCTGCCGTAATCCTGGACTTGGCTGAA
CTGTGTAACTACCCTGCTCCCTTTGTTCATCTTAACCCAACCCTCATTCTCTTCTTTTTGTGAT
CCAATTTGGGGTTTTCTTTTCCTCCTCGAAGTTAATCCAAACAGTTGCAAAGATGCATTTGTAG
TGAGTACCTCCAGGTCTGGTGCTGAAGCCAGACGGAGCGGGAGCACTGCAGGGACAGCATTGCT
TCCTGCCTGGGGACTTGCTGATTGACCCTGGCTGTGAAATCACTCCACTAACCTTTCTCCAGCG
TGGGCCAGGGACATTATAACTTTGGAAAGAAGCCCCAGTCTGCCATCCATAGATTCTGAAGATC
TCTTCTCCTTTGCTGTCTGCCCAGTTGCCAAGCACGCCCTGCTGCCCAGAGCGTTGTTCCCTTA
ACAGCAAGCGCACGTCTGCGCCGCCTGCTTTCTGACTGAAGGGGAAGTACAGGAATATGTGGAA
TCTGATTGCTTATTACCAAAAATGACAGAATATTCTTGATCAAAGGCCTAGATATATTTTTAAT
ATTTGGGGCATGAGCTTCCCCTGTTTGAGAGTTCCCATTACTGAGGTAGAAATGTTAATTTGCT
AAACATAATTTGCTAAAATGACCAGTTTTCAGATTCACCTGTGCGTGTGCCCCCACTCGCACCC
CACCCCATTCTCTCCATAGAACGTTTGCTGTCAGCTCGGCGGTCTCCATTTCGAGGTGTTTATC
AGAAGCGAGGAGGGGAGCAAATGAAGCCGTGCTGCCCAGCCCTCCTCGTCTTGTATTTGTTTAG
GTTGTGAGGTTGTGTAAATAGTAGCTTCCTACTTGAGAACTACAGCTCCTGCTTATCATTGATC
CTTTCCTGTGGCACTTAATATTTTAATTGTCTTAAGCTTTTGATGTACATCCTCTGGCCCCTTA
CACGCTGCCAGAGGAGAAGGTGTTTGAGATTCATTCCACTTGAAGTGTCTTTCCTGGGCTCCCC
ACAGCTGCAGATGGCTGGGAAGTGGACTTGAGGAATGGGCTCGAATTGGTGGTTCATGCCTGTG
AGGACCCATCATGAGTCATCGGGATTTGTGTTGCATGGAAGGCAATCTTTCCTGTTGTAAATCT
TCCTTTTTTATGTACATATATTTTGAAAATATGAATAAACATGAAATTTTAAAAGCTGCTGAAC
TACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039110060 ⟹ XP_038965988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,719,596 - 155,746,314 (+)	NCBI
mRatBN7.2	5	150,436,229 - 150,462,992 (+)	NCBI

RefSeq Acc Id:

XM_039110062 ⟹ XP_038965990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,719,630 - 155,746,314 (+)	NCBI
mRatBN7.2	5	150,436,256 - 150,462,992 (+)	NCBI

RefSeq Acc Id:

XM_039110063 ⟹ XP_038965991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,719,109 - 155,746,314 (+)	NCBI
mRatBN7.2	5	150,435,781 - 150,462,992 (+)	NCBI

RefSeq Acc Id:

XM_063287789 ⟹ XP_063143859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,724,426 - 155,746,314 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001423781	(Get FASTA)	NCBI Sequence Viewer
	NP_001423782	(Get FASTA)	NCBI Sequence Viewer
	NP_001423783	(Get FASTA)	NCBI Sequence Viewer
	NP_001423784	(Get FASTA)	NCBI Sequence Viewer
	NP_001423785	(Get FASTA)	NCBI Sequence Viewer
	NP_001423786	(Get FASTA)	NCBI Sequence Viewer
	NP_001423787	(Get FASTA)	NCBI Sequence Viewer
	NP_001423788	(Get FASTA)	NCBI Sequence Viewer
	NP_954539	(Get FASTA)	NCBI Sequence Viewer
	XP_038965988	(Get FASTA)	NCBI Sequence Viewer
	XP_038965990	(Get FASTA)	NCBI Sequence Viewer
	XP_038965991	(Get FASTA)	NCBI Sequence Viewer
	XP_063143859	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61837	(Get FASTA)	NCBI Sequence Viewer
	EDL80858	(Get FASTA)	NCBI Sequence Viewer
	EDL80859	(Get FASTA)	NCBI Sequence Viewer
	EDL80860	(Get FASTA)	NCBI Sequence Viewer
	EDL80861	(Get FASTA)	NCBI Sequence Viewer
	EDL80862	(Get FASTA)	NCBI Sequence Viewer
	EDL80863	(Get FASTA)	NCBI Sequence Viewer
	EDL80864	(Get FASTA)	NCBI Sequence Viewer
	EDL80865	(Get FASTA)	NCBI Sequence Viewer
	EDL80866	(Get FASTA)	NCBI Sequence Viewer
	EDL80867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019696
	ENSRNOP00000067949
	ENSRNOP00000067949.2
	ENSRNOP00000068507
GenBank Protein	Q6P747	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_954539 ⟸ NM_199108

- UniProtKB:

Q6P747 (UniProtKB/Swiss-Prot), A6ITG0 (UniProtKB/TrEMBL), A6ITG3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATDMSQGELIHPKALPLIVGAQLIHADKLGEKADDSTMPIRRAVNSTRETPPKSKLAEGEEEK
PEPDGSSEESISTVEEPENETPPAPSREAEQPKGEPESGEKEESKSAEETKKEEKDQSKEKEKK
VKKTIPAWATLSASQLARAQKQTPMASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYP
SLDLERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQKSKTPQKSKNRKKGSAVDPEPQVK
LEDVLPLAFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGA
SGTFQLKKSGEKPLLGGSLMEYAILSAIAAMNEPKTCSTTALKKYVLENHPGTNSNYQMHLLKK
TLQKCEKNGWLEQISGKGFSGTFQLCFPYYPSPGVLFPKKVSDGSEDEDEEEDEEESSEDSEDE
EPPPKRSLQKKTPAKPQGKTASMKQRGAKPARKVPAAQRGKVRPLPKKAPPKAKTPARKGRPAP
SAVKKPSGSTSKKPVANARKEAKLPGKGKSAMKKKSFKTKK

hide sequence

Ensembl Acc Id:

ENSRNOP00000067949 ⟸ ENSRNOT00000075852

Ensembl Acc Id:

ENSRNOP00000019696 ⟸ ENSRNOT00000019696

Ensembl Acc Id:

ENSRNOP00000068507 ⟸ ENSRNOT00000076772

RefSeq Acc Id:	XP_038965991 ⟸ XM_039110063
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965988 ⟸ XM_039110060
- Peptide Label:	isoform X1
- UniProtKB:	F1M6V1 (UniProtKB/TrEMBL), A6ITF7 (UniProtKB/TrEMBL), A6ITF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965990 ⟸ XM_039110062
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063143859 ⟸ XM_063287789
- Peptide Label:	isoform X3

Protein Domains

H15

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P747-F1-model_v2	AlphaFold	Q6P747	1-553	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694187

Promoter ID:

EPDNEW_R4710

Type:

multiple initiation site

Name:

Hp1bp3_1

Description:

heterochromatin protein 1, binding protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	156,581,751 - 156,581,811	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735099	AgrOrtholog
BioCyc Gene	G2FUF-39461	BioCyc
Ensembl Genes	ENSRNOG00000014445	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000019696	ENTREZGENE
	ENSRNOT00000075852	ENTREZGENE
	ENSRNOT00000075852.2	UniProtKB/Swiss-Prot
	ENSRNOT00000076772	ENTREZGENE
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599940	IMAGE-MGC_LOAD
InterPro	Histone_H1/H5_H15	UniProtKB/Swiss-Prot
	Histone_H5	UniProtKB/Swiss-Prot
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot
	WH_DNA-bd_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:313647	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72624	IMAGE-MGC_LOAD
NCBI Gene	313647	ENTREZGENE
PANTHER	PTHR15832:SF1	UniProtKB/Swiss-Prot
	SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG	UniProtKB/Swiss-Prot
Pfam	Linker_histone	UniProtKB/Swiss-Prot
PhenoGen	Hp1bp3	PhenoGen
PRINTS	HISTONEH5	UniProtKB/Swiss-Prot
PROSITE	H15	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014445	RatGTEx
SMART	H15	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46785	UniProtKB/Swiss-Prot
UniProt	A0A096MJ10_RAT	UniProtKB/TrEMBL
	A0A096MKG6_RAT	UniProtKB/TrEMBL
	A6ITF7	ENTREZGENE, UniProtKB/TrEMBL
	A6ITF8	ENTREZGENE, UniProtKB/TrEMBL
	A6ITG0	ENTREZGENE, UniProtKB/TrEMBL
	A6ITG3	ENTREZGENE, UniProtKB/TrEMBL
	A6ITG6	ENTREZGENE, UniProtKB/TrEMBL
	F1M6V1	ENTREZGENE, UniProtKB/TrEMBL
	HP1B3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Hp1bp3	heterochromatin protein 1, binding protein 3	MGC72624	Unknown (protein for MGC:72624)	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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