Bicd2 (BICD cargo adaptor 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Bicd2 (BICD cargo adaptor 2) Rattus norvegicus
Analyze
Symbol: Bicd2
Name: BICD cargo adaptor 2
RGD ID: 735093
Description: Predicted to enable several functions, including dynactin binding activity; dynein complex binding activity; and dynein light intermediate chain binding activity. Predicted to be involved in several processes, including microtubule anchoring at microtubule organizing center; minus-end-directed organelle transport along microtubule; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in several cellular components, including annulate lamellae; centrosome; and nuclear envelope. Predicted to be part of nuclear pore. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominant 2A and spinal muscular atrophy with lower extremity predominant 2B. Orthologous to human BICD2 (BICD cargo adaptor 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bicaudal D homolog 2; bicaudal D homolog 2 (Drosophila); bicaudal D protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,449,011 - 15,511,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1715,435,894 - 15,511,305 (-)EnsemblGRCr8
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1715,146,828 - 15,191,665 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,751,888 - 16,796,726 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,073,624 - 15,118,460 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)Ensemblrn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1714,990,557 - 15,035,504 (-)NCBICelera
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Cytogenetic Map17p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mammalian Golgi-associated Bicaudal-D2 functions in the dynein-dynactin pathway by interacting with these complexes. Hoogenraad CC, etal., EMBO J 2001 Aug 1;20(15):4041-54.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12447383   PMID:12477932   PMID:17139249   PMID:19825938   PMID:20386726   PMID:22956769   PMID:23664116   PMID:24614806   PMID:25272277   PMID:25962623  


Genomics

Comparative Map Data
Bicd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,449,011 - 15,511,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1715,435,894 - 15,511,305 (-)EnsemblGRCr8
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1715,146,828 - 15,191,665 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,751,888 - 16,796,726 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,073,624 - 15,118,460 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)Ensemblrn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1714,990,557 - 15,035,504 (-)NCBICelera
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Cytogenetic Map17p14NCBI
BICD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,711,363 - 92,764,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,711,363 - 92,764,833 (-)Ensemblhg38GRCh38
GRCh37995,473,645 - 95,527,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,513,466 - 94,566,904 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34992,553,199 - 92,606,638NCBI
Celera965,915,700 - 65,969,136 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef965,151,961 - 65,205,073 (-)NCBIHuRef
CHM1_1995,620,081 - 95,673,514 (-)NCBICHM1_1
T2T-CHM13v2.09104,877,924 - 104,931,411 (-)NCBIT2T-CHM13v2.0
Bicd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,495,025 - 49,540,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,495,061 - 49,540,502 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381349,341,549 - 49,387,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,341,585 - 49,387,026 (+)Ensemblmm10GRCm38
MGSCv371349,436,918 - 49,482,394 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361349,353,486 - 49,398,962 (+)NCBIMGSCv36mm8
Celera1350,431,086 - 50,476,523 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.22NCBI
Bicd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,061,005 - 5,103,179 (+)Ensembl
ChiLan1.0NW_0049555155,060,176 - 5,105,298 (+)NCBIChiLan1.0ChiLan1.0
BICD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,660,629 - 46,717,041 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,663,017 - 46,719,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,834,515 - 63,890,904 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,905,982 - 91,959,186 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,909,771 - 91,959,131 (-)EnsemblpanPan2panpan1.1
BICD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,697,050 - 98,736,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bicd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,071,268 - 8,119,191 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,255,882 - 2,335,731 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,287,736 - 2,335,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,393,277 - 42,456,782 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1342,393,270 - 42,456,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,627,163 - 43,647,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,232,602 - 103,281,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,232,327 - 103,281,288 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603891,504,437 - 91,553,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bicd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11468,329,203 - 68,372,753 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bicd2
529 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:231
Interacting mature miRNAs:295
Transcripts:ENSRNOT00000048653
Prediction methods:Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920650523859062Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920650523859062Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17798524316523460Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920650523859062Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
D17Rat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81715,488,286 - 15,488,482 (+)Marker Load Pipeline
mRatBN7.21715,281,866 - 15,282,062 (+)MAPPERmRatBN7.2
Rnor_6.01715,695,017 - 15,695,212NCBIRnor6.0
Rnor_5.01717,752,672 - 17,752,867UniSTSRnor5.0
RGSC_v3.41721,237,691 - 21,237,887RGDRGSC3.4
RGSC_v3.41721,237,692 - 21,237,887UniSTSRGSC3.4
Celera1715,012,473 - 15,012,680UniSTS
RGSC_v3.11721,237,692 - 21,237,887RGD
RH 3.4 Map17178.02UniSTS
RH 3.4 Map17178.02RGD
SHRSP x BN Map1711.64UniSTS
SHRSP x BN Map1711.64RGD
FHH x ACI Map1711.2699RGD
Cytogenetic Map17p14UniSTS
RH91165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,818 - 15,259,997 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,695 - 15,673,873NCBIRnor6.0
Rnor_5.01717,731,064 - 17,731,242UniSTSRnor5.0
RGSC_v3.41721,215,023 - 21,215,201UniSTSRGSC3.4
Celera1714,990,603 - 14,990,781UniSTS
Cytogenetic Map17p14UniSTS
RH131216  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,305,256 - 15,305,473 (+)MAPPERmRatBN7.2
Rnor_6.01715,718,403 - 15,718,619NCBIRnor6.0
Rnor_5.01717,775,979 - 17,776,195UniSTSRnor5.0
RGSC_v3.41721,261,097 - 21,261,313UniSTSRGSC3.4
Celera1715,035,872 - 15,036,088UniSTS
RH 3.4 Map17160.8UniSTS
Cytogenetic Map17p14UniSTS
AA891724  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,949 - 15,260,179 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,826 - 15,674,055NCBIRnor6.0
Rnor_5.01717,731,195 - 17,731,424UniSTSRnor5.0
RGSC_v3.41721,215,154 - 21,215,383UniSTSRGSC3.4
Celera1714,990,734 - 14,990,963UniSTS
RH 3.4 Map17176.2UniSTS
Cytogenetic Map17p14UniSTS
G06234  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,794 - 15,260,055 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,671 - 15,673,931NCBIRnor6.0
Rnor_5.01717,731,040 - 17,731,300UniSTSRnor5.0
RGSC_v3.41721,214,999 - 21,215,259UniSTSRGSC3.4
Celera1714,990,579 - 14,990,839UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000048653   ⟹   ENSRNOP00000047890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1715,466,193 - 15,511,305 (-)Ensembl
mRatBN7.2 Ensembl1715,259,775 - 15,304,889 (-)Ensembl
Rnor_6.0 Ensembl1715,673,650 - 15,718,015 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090647   ⟹   ENSRNOP00000069365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1715,446,069 - 15,511,305 (-)Ensembl
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)Ensembl
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151003   ⟹   ENSRNOP00000110082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1715,468,623 - 15,511,305 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155748   ⟹   ENSRNOP00000109192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1715,435,894 - 15,511,305 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160531   ⟹   ENSRNOP00000107119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1715,467,223 - 15,511,305 (-)Ensembl
RefSeq Acc Id: NM_001033674   ⟹   NP_001028846
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,466,193 - 15,511,305 (-)NCBI
mRatBN7.21715,259,773 - 15,304,889 (-)NCBI
Rnor_6.01715,673,649 - 15,718,035 (-)NCBI
Rnor_5.01717,731,018 - 17,775,611 (-)NCBI
RGSC_v3.41721,214,977 - 21,260,729 (-)RGD
Celera1714,990,557 - 15,035,504 (-)RGD
Sequence:
RefSeq Acc Id: NM_198765   ⟹   NP_942060
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,466,193 - 15,511,305 (-)NCBI
mRatBN7.21715,259,773 - 15,304,889 (-)NCBI
Rnor_6.01715,673,649 - 15,718,035 (-)NCBI
Rnor_5.01717,731,018 - 17,775,611 (-)NCBI
RGSC_v3.41721,214,977 - 21,260,729 (-)RGD
Celera1714,990,557 - 15,035,504 (-)RGD
Sequence:
RefSeq Acc Id: XR_010058861
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,449,011 - 15,511,423 (-)NCBI
RefSeq Acc Id: NP_001028846   ⟸   NM_001033674
- Peptide Label: isoform 1
- UniProtKB: Q496Z1 (UniProtKB/TrEMBL),   A0A8J8Y893 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942060   ⟸   NM_198765
- Peptide Label: isoform 2
- UniProtKB: Q712J3 (UniProtKB/TrEMBL),   F7FC29 (UniProtKB/TrEMBL),   A0A8J8Y893 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047890   ⟸   ENSRNOT00000048653
Ensembl Acc Id: ENSRNOP00000069365   ⟸   ENSRNOT00000090647
Ensembl Acc Id: ENSRNOP00000107119   ⟸   ENSRNOT00000160531
Ensembl Acc Id: ENSRNOP00000109192   ⟸   ENSRNOT00000155748
Ensembl Acc Id: ENSRNOP00000110082   ⟸   ENSRNOT00000151003

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q496Z1-F1-model_v2 AlphaFold Q496Z1 1-851 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700354
Promoter ID:EPDNEW_R10877
Type:initiation region
Name:Bicd2_1
Description:BICD cargo adaptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01715,718,027 - 15,718,087EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735093 AgrOrtholog
BioCyc Gene G2FUF-9993 BioCyc
Ensembl Genes ENSRNOG00000016031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048653 ENTREZGENE
  ENSRNOT00000048653.6 UniProtKB/TrEMBL
  ENSRNOT00000090647.3 UniProtKB/TrEMBL
  ENSRNOT00000151003 ENTREZGENE
  ENSRNOT00000151003.1 UniProtKB/TrEMBL
  ENSRNOT00000155748.1 UniProtKB/TrEMBL
  ENSRNOT00000160531.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2470 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7935996 IMAGE-MGC_LOAD
InterPro Bicaudal-D_microtubule-assoc UniProtKB/TrEMBL
KEGG Report rno:306809 UniProtKB/TrEMBL
MGC_CLONE MGC:124540 IMAGE-MGC_LOAD
NCBI Gene 306809 ENTREZGENE
PANTHER PROTEIN BICAUDAL D HOMOLOG 2 UniProtKB/TrEMBL
  PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
PhenoGen Bicd2 PhenoGen
RatGTEx ENSRNOG00000016031 RatGTEx
UniProt A0A0G2JV64_RAT UniProtKB/TrEMBL
  A0A8J8Y893 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LEJ2_RAT UniProtKB/TrEMBL
  A0ABK0LGW7_RAT UniProtKB/TrEMBL
  A0ABK0LMZ6_RAT UniProtKB/TrEMBL
  A6J6W7_RAT UniProtKB/TrEMBL
  F7FC29 ENTREZGENE
  Q496Z1 ENTREZGENE, UniProtKB/TrEMBL
  Q712J2_RAT UniProtKB/TrEMBL
  Q712J3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FC29 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Bicd2  BICD cargo adaptor 2  Bicd2  bicaudal D homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Bicd2  bicaudal D homolog 2 (Drosophila)      Symbol updated 1299863 APPROVED
2004-09-10 BicD2  bicaudal D homolog 2 (Drosophila)    bicaudal D protein  Name updated 1299863 APPROVED