Trmt11 (tRNA methyltransferase 11) - Rat Genome Database

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Gene: Trmt11 (tRNA methyltransferase 11) Rattus norvegicus
Analyze
Symbol: Trmt11
Name: tRNA methyltransferase 11 (Ensembl:tRNA methyltransferase 11 homolog)
RGD ID: 727798
Description: Predicted to enable tRNA (guanine(10)-N2)-methyltransferase activity. Predicted to be involved in methylation and tRNA processing. Predicted to be part of tRNA (m2G10) methyltransferase complex. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; thioacetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Mds024; putative RNA methylase; putative RNA methylase MDS024; tRNA (guanine(10)-N(2))-methyltransferase homolog; tRNA (guanine(10)-N(2))-methyltransferase TRMT11; tRNA (guanine(10)-N2)-methyltransferase homolog; tRNA guanosine-2'-O-methyltransferase TRM11 homolog; tRNA methyltransferase 11 homolog; tRNA methyltransferase 11 homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,873,361 - 28,928,679 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl128,873,318 - 29,020,343 (+)EnsemblGRCr8
mRatBN7.2127,054,437 - 27,109,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,054,420 - 27,201,610 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx126,805,590 - 26,860,866 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0132,805,396 - 32,860,678 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0127,006,171 - 27,061,450 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,432,109 - 29,576,079 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,432,152 - 29,487,473 (+)Ensemblrn6Rnor6.0
Rnor_5.0130,871,680 - 31,014,648 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,737,888 - 27,793,207 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera125,731,346 - 25,786,348 (+)NCBICelera
RGSC_v3.1127,740,832 - 27,796,148 (+)NCBI
Cytogenetic Map1p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15899842   PMID:34800366  


Genomics

Comparative Map Data
Trmt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,873,361 - 28,928,679 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl128,873,318 - 29,020,343 (+)EnsemblGRCr8
mRatBN7.2127,054,437 - 27,109,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,054,420 - 27,201,610 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx126,805,590 - 26,860,866 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0132,805,396 - 32,860,678 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0127,006,171 - 27,061,450 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,432,109 - 29,576,079 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,432,152 - 29,487,473 (+)Ensemblrn6Rnor6.0
Rnor_5.0130,871,680 - 31,014,648 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,737,888 - 27,793,207 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera125,731,346 - 25,786,348 (+)NCBICelera
RGSC_v3.1127,740,832 - 27,796,148 (+)NCBI
Cytogenetic Map1p11NCBI
TRMT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,986,540 - 126,272,343 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,986,428 - 126,203,817 (+)Ensemblhg38GRCh38
GRCh376126,307,686 - 126,400,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366126,349,269 - 126,402,115 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346126,349,323 - 126,402,111NCBI
Celera6127,049,859 - 127,102,703 (+)NCBICelera
Cytogenetic Map6q22.32NCBI
HuRef6123,883,922 - 123,936,767 (+)NCBIHuRef
CHM1_16126,571,484 - 126,624,331 (+)NCBICHM1_1
T2T-CHM13v2.06127,175,155 - 127,468,301 (+)NCBIT2T-CHM13v2.0
Trmt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391030,410,218 - 30,477,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1030,410,221 - 30,476,745 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381030,534,225 - 30,602,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1030,534,225 - 30,600,749 (-)Ensemblmm10GRCm38
MGSCv371030,254,031 - 30,320,555 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361030,223,641 - 30,290,108 (-)NCBIMGSCv36mm8
Celera1031,459,990 - 31,526,850 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.07NCBI
Trmt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554367,274,745 - 7,320,997 (+)Ensembl
ChiLan1.0NW_0049554367,274,848 - 7,318,762 (+)NCBIChiLan1.0ChiLan1.0
TRMT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,976,663 - 146,029,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,881,943 - 143,975,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06123,770,783 - 123,825,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,888,697 - 127,941,505 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,888,697 - 127,941,505 (+)EnsemblpanPan2panpan1.1
TRMT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1164,861,404 - 64,917,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl164,834,770 - 65,064,562 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha165,671,144 - 65,727,209 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0165,071,886 - 65,127,836 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,036,893 - 65,127,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1164,999,643 - 65,055,645 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,788,305 - 64,844,339 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,438,364 - 65,494,421 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trmt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946114,924,830 - 114,978,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366393,440,703 - 3,494,362 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366393,442,026 - 3,494,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl136,940,334 - 37,002,056 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1136,930,857 - 37,002,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2140,704,053 - 40,774,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11347,680,321 - 47,735,103 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1347,680,332 - 47,734,857 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604019,992,464 - 20,046,599 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12204,217,901 - 204,663,316 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trmt11
496 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:85
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000019436
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 354 191 11 144 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019436   ⟹   ENSRNOP00000019436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,318 - 28,927,945 (+)Ensembl
mRatBN7.2 Ensembl127,054,420 - 27,109,765 (+)Ensembl
Rnor_6.0 Ensembl129,432,152 - 29,487,473 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083276   ⟹   ENSRNOP00000069979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,318 - 29,020,343 (+)Ensembl
mRatBN7.2 Ensembl127,054,420 - 27,201,610 (+)Ensembl
Rnor_6.0 Ensembl129,432,174 - 29,487,317 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139645   ⟹   ENSRNOP00000105205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,318 - 28,929,026 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154372   ⟹   ENSRNOP00000108491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,877,282 - 28,929,026 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159790   ⟹   ENSRNOP00000106553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,353 - 28,924,209 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165551   ⟹   ENSRNOP00000106219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,353 - 28,955,786 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172526   ⟹   ENSRNOP00000104881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,874,407 - 28,929,026 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173423   ⟹   ENSRNOP00000099780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,873,318 - 28,956,132 (+)Ensembl
RefSeq Acc Id: NM_198051   ⟹   NP_932168
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,873,361 - 28,928,679 (+)NCBI
mRatBN7.2127,054,437 - 27,109,765 (+)NCBI
Rnor_6.0129,432,131 - 29,487,450 (+)NCBI
Rnor_5.0130,871,680 - 31,014,648 (+)NCBI
RGSC_v3.4127,737,888 - 27,793,207 (+)RGD
Celera125,731,346 - 25,786,348 (+)RGD
Sequence:
RefSeq Acc Id: NP_932168   ⟸   NM_198051
- UniProtKB: Q7TNK6 (UniProtKB/Swiss-Prot),   A6JUS6 (UniProtKB/TrEMBL),   F1MA13 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019436   ⟸   ENSRNOT00000019436
Ensembl Acc Id: ENSRNOP00000069979   ⟸   ENSRNOT00000083276
Ensembl Acc Id: ENSRNOP00000105205   ⟸   ENSRNOT00000139645
Ensembl Acc Id: ENSRNOP00000106553   ⟸   ENSRNOT00000159790
Ensembl Acc Id: ENSRNOP00000106219   ⟸   ENSRNOT00000165551
Ensembl Acc Id: ENSRNOP00000099780   ⟸   ENSRNOT00000173423
Ensembl Acc Id: ENSRNOP00000108491   ⟸   ENSRNOT00000154372
Ensembl Acc Id: ENSRNOP00000104881   ⟸   ENSRNOT00000172526
Protein Domains
Ribosomal RNA large subunit methyltransferase K/L-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNK6-F1-model_v2 AlphaFold Q7TNK6 1-463 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689545
Promoter ID:EPDNEW_R69
Type:multiple initiation site
Name:Trmt11_1
Description:tRNA methyltransferase 11 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0129,432,153 - 29,432,213EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727798 AgrOrtholog
BioCyc Gene G2FUF-61977 BioCyc
Ensembl Genes ENSRNOG00000014240 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000139645 ENTREZGENE
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot
InterPro DNA_methylase_N6_adenine_CS UniProtKB/Swiss-Prot
  RNA_methylase_dom UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
  tRNA_mtfrase_TRM11 UniProtKB/Swiss-Prot
KEGG Report rno:378794 UniProtKB/Swiss-Prot
NCBI Gene 378794 ENTREZGENE
PANTHER RNA METHYLASE-RELATED UniProtKB/Swiss-Prot
  TRNA (GUANINE(10)-N2)-METHYLTRANSFERASE HOMOLOG UniProtKB/Swiss-Prot
Pfam UPF0020 UniProtKB/Swiss-Prot
PhenoGen Trmt11 PhenoGen
PIRSF tRNA_mtfrase_TRM11 UniProtKB/Swiss-Prot
PRINTS N12N6MTFRASE UniProtKB/Swiss-Prot
PROSITE N6_MTASE UniProtKB/Swiss-Prot
  SAM_MT_TRM11 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014240 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
UniProt A0A0G2JWR1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KY29_RAT UniProtKB/TrEMBL
  A0ABK0L7P5_RAT UniProtKB/TrEMBL
  A0ABK0L8K9_RAT UniProtKB/TrEMBL
  A0ABK0LCT1_RAT UniProtKB/TrEMBL
  A0ABK0LK83_RAT UniProtKB/TrEMBL
  A0ABK0LMJ4_RAT UniProtKB/TrEMBL
  A6JUS6 ENTREZGENE, UniProtKB/TrEMBL
  F1MA13 ENTREZGENE, UniProtKB/TrEMBL
  Q7TNK6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Trmt11  tRNA methyltransferase 11  Trmt11  tRNA methyltransferase 11 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-10-07 Trmt11  tRNA methyltransferase 11 homolog  Trmt11  tRNA methyltransferase 11 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Trmt11  tRNA methyltransferase 11 homolog (S. cerevisiae)  Mds024  putative RNA methylase MDS024  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Mds024  putative RNA methylase MDS024    putative RNA methylase  Name updated 1299863 APPROVED