Snrk (SNF related kinase) - Rat Genome Database

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Gene: Snrk (SNF related kinase) Rattus norvegicus
Analyze
Symbol: Snrk
Name: SNF related kinase
RGD ID: 69653
Description: Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation. Located in nucleus. Orthologous to human SNRK (SNF related kinase); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: SNF-related serine/threonine-protein kinase; SNF1-related kinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,657,204 - 130,711,461 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8130,657,266 - 130,711,457 (+)EnsemblGRCr8
mRatBN7.28121,779,704 - 121,833,949 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,793,302 - 121,832,323 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8127,389,400 - 127,428,475 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,588,467 - 125,627,540 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,414,905 - 123,453,894 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd8131,530,325 - 131,569,370 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive8133,633,224 - 133,672,271 (+)NCBILyon_Normotensive
Lyon_Hypertensive8132,119,864 - 132,158,911 (+)NCBILyon_Hypertensive
F344_StmMcwi8123,526,682 - 123,565,735 (+)NCBIF344_StmMcwi
Rnor_6.08130,749,806 - 130,805,225 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,749,838 - 130,803,597 (+)Ensemblrn6Rnor6.0
Rnor_5.08129,919,623 - 129,972,947 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48121,958,351 - 121,968,989 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8120,917,078 - 120,956,102 (+)NCBICelera
RGSC_v3.1X105,608,968 - 105,611,769 (-)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-ethoxyethanol  (EXP)
2-methoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcidiol  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP,ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
Genipin  (ISO)
gentamycin  (EXP)
kainic acid  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nicotine  (ISO)
nitroglycerin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
progesterone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (EXP)
sulforaphane  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of a novel mammalian protein kinase harboring a homology domain that defines a subfamily of serine/threonine kinases. Becker W, etal., Eur J Biochem 1996 Feb 1;235(3):736-43.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Identification and characterization of a novel sucrose-non-fermenting protein kinase/AMP-activated protein kinase-related protein kinase, SNARK. Lefebvre DL, etal., Biochem J 2001 Apr 15;355(Pt 2):297-305.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. SNRK, a member of the SNF1 family, is related to low K(+)-induced apoptosis of cultured rat cerebellar granule neurons. Yoshida K, etal., Brain Res. 2000 Aug 11;873(2):274-82.
Additional References at PubMed
PMID:12234663   PMID:34621049  


Genomics

Comparative Map Data
Snrk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,657,204 - 130,711,461 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8130,657,266 - 130,711,457 (+)EnsemblGRCr8
mRatBN7.28121,779,704 - 121,833,949 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,793,302 - 121,832,323 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8127,389,400 - 127,428,475 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,588,467 - 125,627,540 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,414,905 - 123,453,894 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd8131,530,325 - 131,569,370 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive8133,633,224 - 133,672,271 (+)NCBILyon_Normotensive
Lyon_Hypertensive8132,119,864 - 132,158,911 (+)NCBILyon_Hypertensive
F344_StmMcwi8123,526,682 - 123,565,735 (+)NCBIF344_StmMcwi
Rnor_6.08130,749,806 - 130,805,225 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,749,838 - 130,803,597 (+)Ensemblrn6Rnor6.0
Rnor_5.08129,919,623 - 129,972,947 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48121,958,351 - 121,968,989 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8120,917,078 - 120,956,102 (+)NCBICelera
RGSC_v3.1X105,608,968 - 105,611,769 (-)NCBI
Cytogenetic Map8q32NCBI
SNRK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38343,286,540 - 43,351,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl343,286,510 - 43,424,764 (+)Ensemblhg38GRCh38
GRCh37343,328,032 - 43,392,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36343,303,008 - 43,367,639 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34343,303,099 - 43,367,634NCBI
Celera343,265,488 - 43,330,125 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef343,370,774 - 43,435,413 (+)NCBIHuRef
CHM1_1343,277,962 - 43,342,638 (+)NCBICHM1_1
T2T-CHM13v2.0343,301,825 - 43,366,451 (+)NCBIT2T-CHM13v2.0
Snrk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,946,332 - 121,998,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,946,332 - 121,998,768 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389122,117,266 - 122,169,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,117,266 - 122,169,702 (+)Ensemblmm10GRCm38
MGSCv379122,026,384 - 122,078,820 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369121,980,600 - 122,018,397 (+)NCBIMGSCv36mm8
Celera9122,590,482 - 122,642,516 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.89NCBI
Snrk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,712,967 - 27,754,720 (-)Ensembl
ChiLan1.0NW_00495542027,710,536 - 27,754,682 (-)NCBIChiLan1.0ChiLan1.0
SNRK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2243,236,716 - 43,301,409 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1343,241,481 - 43,306,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0343,179,640 - 43,244,364 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1344,244,453 - 44,305,648 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl344,244,453 - 44,305,648 (+)EnsemblpanPan2panpan1.1
SNRK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1232,909,311 - 2,966,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl232,909,298 - 2,965,508 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,951,537 - 3,009,784 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0233,163,040 - 3,221,277 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,164,695 - 3,221,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,003,099 - 3,061,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,128,311 - 3,186,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,101,885 - 3,160,134 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,558,707 - 199,603,641 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366951,911,027 - 1,956,494 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366951,911,042 - 1,957,192 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,669,257 - 26,724,458 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11326,669,208 - 26,724,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,344,702 - 29,400,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,726,981 - 4,792,618 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,741,622 - 4,790,037 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041162,403,838 - 162,469,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,646,846 - 76,687,263 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473076,621,973 - 76,687,062 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Snrk
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18113,276,666 - 113,330,694 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:77
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000005422
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
MDB0137  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,832,084 - 121,832,280 (+)MAPPERmRatBN7.2
mRatBN7.2X81,952,983 - 81,953,179 (+)MAPPERmRatBN7.2
Rnor_6.08130,803,361 - 130,803,556NCBIRnor6.0
Rnor_5.08129,971,083 - 129,971,278UniSTSRnor5.0
RGSC_v3.48121,968,741 - 121,968,936UniSTSRGSC3.4
Celera8120,955,854 - 120,956,049UniSTS
CeleraX83,182,845 - 83,183,040UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005422   ⟹   ENSRNOP00000005422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8130,762,674 - 130,803,597 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079273   ⟹   ENSRNOP00000071648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8130,657,266 - 130,711,457 (+)Ensembl
mRatBN7.2 Ensembl8121,793,302 - 121,832,323 (+)Ensembl
Rnor_6.0 Ensembl8130,749,838 - 130,803,080 (+)Ensembl
RefSeq Acc Id: NM_138833   ⟹   NP_620188
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88130,670,811 - 130,709,845 (+)NCBI
mRatBN7.28121,793,302 - 121,832,333 (+)NCBI
Dahl_SR_JrHsd8131,530,325 - 131,569,370 (+)NCBI
Lyon_Normotensive8133,633,224 - 133,672,271 (+)NCBI
Lyon_Hypertensive8132,119,864 - 132,158,911 (+)NCBI
F344_StmMcwi8123,526,682 - 123,565,735 (+)NCBI
Rnor_6.08130,762,674 - 130,803,609 (+)NCBI
Rnor_5.08129,919,623 - 129,972,947 (+)NCBI
RGSC_v3.48121,958,351 - 121,968,989 (+)RGD
Celera8120,917,078 - 120,956,102 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244062   ⟹   XP_006244124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88130,657,204 - 130,711,461 (+)NCBI
mRatBN7.28121,779,704 - 121,833,949 (+)NCBI
Rnor_6.08130,749,995 - 130,805,225 (+)NCBI
Rnor_5.08129,919,623 - 129,972,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080738   ⟹   XP_038936666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88130,657,229 - 130,711,461 (+)NCBI
mRatBN7.28121,779,737 - 121,833,949 (+)NCBI
Protein Sequences
Protein RefSeqs NP_620188 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936666 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA61563 (Get FASTA)   NCBI Sequence Viewer  
  EDL76803 (Get FASTA)   NCBI Sequence Viewer  
  EDL76804 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071648
  ENSRNOP00000071648.1
GenBank Protein Q63553 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620188   ⟸   NM_138833
- UniProtKB: Q63553 (UniProtKB/Swiss-Prot),   A6I473 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244124   ⟸   XM_006244062
- Peptide Label: isoform X1
- UniProtKB: Q63553 (UniProtKB/Swiss-Prot),   A6I473 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071648   ⟸   ENSRNOT00000079273
Ensembl Acc Id: ENSRNOP00000005422   ⟸   ENSRNOT00000005422
RefSeq Acc Id: XP_038936666   ⟸   XM_039080738
- Peptide Label: isoform X1
- UniProtKB: Q63553 (UniProtKB/Swiss-Prot),   A6I473 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase   UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63553-F1-model_v2 AlphaFold Q63553 1-746 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696403
Promoter ID:EPDNEW_R6919
Type:initiation region
Name:Snrk_1
Description:SNF related kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08130,749,853 - 130,749,913EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69653 AgrOrtholog
BioCyc Gene G2FUF-28667 BioCyc
Ensembl Genes ENSRNOG00000004050 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000079273 ENTREZGENE
  ENSRNOT00000079273.2 UniProtKB/Swiss-Prot
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
KEGG Report rno:170837 UniProtKB/Swiss-Prot
NCBI Gene 170837 ENTREZGENE
PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/Swiss-Prot
  SNF RELATED KINASE UniProtKB/Swiss-Prot
Pfam Pkinase UniProtKB/Swiss-Prot
PhenoGen Snrk PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004050 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot
TIGR TC236106
UniProt A6I473 ENTREZGENE, UniProtKB/TrEMBL
  Q63553 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Snrk  SNF related kinase      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed in brain, heart, fat cells, intestine, testis, ovary, adrenal gland and thymus 1299221
gene_function auto-phosphorylates 68722
gene_process may mediate the cellular reponse to metabolic stress 68722
gene_protein 630 amino acid residues 68722