Slc22a17 (solute carrier family 22, member 17) - Rat Genome Database

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Pathways
Gene: Slc22a17 (solute carrier family 22, member 17) Rattus norvegicus
Analyze
Symbol: Slc22a17
Name: solute carrier family 22, member 17
RGD ID: 631405
Description: Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in siderophore transport. Predicted to be located in organelle membrane and plasma membrane. Orthologous to human SLC22A17 (solute carrier family 22 member 17); INTERACTS WITH (+)-schisandrin B; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 24p3 receptor; 24p3R; Boct; brain-specific organic ion transporter; brain-type organic cation transporter; lipocalin-2 receptor; MGC116043; rBOCT; solute carrier family 22 (organic cation transporter), member 17; solute carrier family 22 member 17
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,352,273 - 32,358,780 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,349,944 - 32,358,785 (-)EnsemblGRCr8
mRatBN7.21528,382,285 - 28,389,435 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,382,292 - 28,388,799 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1530,227,996 - 30,234,484 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,375,198 - 31,381,686 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,617,888 - 29,624,383 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,569,824 - 33,576,972 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,569,843 - 33,576,331 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,456,770 - 37,463,918 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41533,008,690 - 33,015,184 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,960,106 - 27,966,600 (-)NCBICelera
RGSC_v3.11533,024,383 - 33,030,880 (-)NCBI
Cytogenetic Map15p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
organelle membrane  (IEA,ISO,ISS)
plasma membrane  (IEA,ISO,ISS)
vacuolar membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16377569   PMID:17253959   PMID:21359964   PMID:22084236   PMID:30404645   PMID:31211866   PMID:32627017  


Genomics

Comparative Map Data
Slc22a17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,352,273 - 32,358,780 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,349,944 - 32,358,785 (-)EnsemblGRCr8
mRatBN7.21528,382,285 - 28,389,435 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,382,292 - 28,388,799 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1530,227,996 - 30,234,484 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,375,198 - 31,381,686 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,617,888 - 29,624,383 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,569,824 - 33,576,972 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,569,843 - 33,576,331 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,456,770 - 37,463,918 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41533,008,690 - 33,015,184 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,960,106 - 27,966,600 (-)NCBICelera
RGSC_v3.11533,024,383 - 33,030,880 (-)NCBI
Cytogenetic Map15p13NCBI
SLC22A17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,346,311 - 23,352,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,346,314 - 23,352,912 (-)Ensemblhg38GRCh38
GRCh371423,815,520 - 23,822,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,885,367 - 22,891,920 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341422,885,367 - 22,891,319NCBI
Celera143,678,238 - 3,684,791 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,931,941 - 3,938,494 (-)NCBIHuRef
CHM1_11423,814,199 - 23,820,752 (-)NCBICHM1_1
T2T-CHM13v2.01417,547,327 - 17,553,903 (-)NCBIT2T-CHM13v2.0
Slc22a17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,144,184 - 55,154,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,143,761 - 55,150,589 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381454,906,727 - 54,913,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,906,304 - 54,913,132 (-)Ensemblmm10GRCm38
MGSCv371455,525,564 - 55,531,969 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361453,860,950 - 53,867,287 (-)NCBIMGSCv36mm8
Celera1452,713,032 - 52,719,445 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1427.99NCBI
SLC22A17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,778,025 - 24,784,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,994,518 - 24,001,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,165,419 - 4,172,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,260,079 - 22,266,666 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,260,079 - 22,266,667 (-)EnsemblpanPan2panpan1.1
SLC22A17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,594,572 - 3,600,380 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,594,572 - 3,600,286 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha83,542,906 - 3,549,350 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.083,702,403 - 3,708,849 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,702,410 - 3,708,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,394,004 - 3,400,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,455,276 - 3,461,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,717,453 - 3,723,900 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc22a17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,359,508 - 35,365,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,022,971 - 1,029,672 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,023,026 - 1,029,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,734,871 - 75,741,112 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1775,734,724 - 75,741,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,999,765 - 81,006,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,717,829 - 23,724,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605922,693,398 - 22,700,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,209,864 - 9,220,087 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248209,210,015 - 9,216,620 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc22a17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,078,116 - 70,085,135 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc22a17
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:47
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000021851
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
RH131172  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,382,382 - 28,382,591 (+)MAPPERmRatBN7.2
Rnor_6.01533,569,922 - 33,570,130NCBIRnor6.0
Rnor_5.01537,456,868 - 37,457,076UniSTSRnor5.0
RGSC_v3.41533,008,775 - 33,008,983UniSTSRGSC3.4
Celera1527,960,191 - 27,960,399UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021851   ⟹   ENSRNOP00000021851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,352,281 - 32,358,785 (-)Ensembl
mRatBN7.2 Ensembl1528,382,293 - 28,388,799 (-)Ensembl
Rnor_6.0 Ensembl1533,569,843 - 33,576,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102200   ⟹   ENSRNOP00000082506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,352,281 - 32,358,138 (-)Ensembl
mRatBN7.2 Ensembl1528,382,293 - 28,388,208 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104533   ⟹   ENSRNOP00000096057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,352,281 - 32,358,776 (-)Ensembl
mRatBN7.2 Ensembl1528,382,292 - 28,388,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111642   ⟹   ENSRNOP00000083004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,352,281 - 32,358,785 (-)Ensembl
mRatBN7.2 Ensembl1528,382,293 - 28,388,799 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148730   ⟹   ENSRNOP00000110441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,349,944 - 32,358,785 (-)Ensembl
RefSeq Acc Id: NM_177421   ⟹   NP_803156
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,352,286 - 32,358,780 (-)NCBI
mRatBN7.21528,382,298 - 28,388,794 (-)NCBI
Rnor_6.01533,569,837 - 33,576,331 (-)NCBI
Rnor_5.01537,456,770 - 37,463,918 (-)NCBI
RGSC_v3.41533,008,690 - 33,015,184 (-)RGD
Celera1527,960,106 - 27,966,600 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251965   ⟹   XP_006252027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,352,273 - 32,358,702 (-)NCBI
mRatBN7.21528,382,285 - 28,389,435 (-)NCBI
Rnor_6.01533,569,824 - 33,576,972 (-)NCBI
Rnor_5.01537,456,770 - 37,463,918 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_803156 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252027 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99072 (Get FASTA)   NCBI Sequence Viewer  
  BAA94604 (Get FASTA)   NCBI Sequence Viewer  
  EDM14202 (Get FASTA)   NCBI Sequence Viewer  
  EDM14203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021851
  ENSRNOP00000096057
GenBank Protein Q9P290 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_803156   ⟸   NM_177421
- UniProtKB: A0A8L2QB08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252027   ⟸   XM_006251965
- Peptide Label: isoform X1
- UniProtKB: Q4KLP1 (UniProtKB/Swiss-Prot),   Q9P290 (UniProtKB/Swiss-Prot),   A0A8I5ZZ20 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021851   ⟸   ENSRNOT00000021851
Ensembl Acc Id: ENSRNOP00000082506   ⟸   ENSRNOT00000102200
Ensembl Acc Id: ENSRNOP00000096057   ⟸   ENSRNOT00000104533
Ensembl Acc Id: ENSRNOP00000083004   ⟸   ENSRNOT00000111642
Ensembl Acc Id: ENSRNOP00000110441   ⟸   ENSRNOT00000148730
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9P290-F1-model_v2 AlphaFold Q9P290 1-520 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699664
Promoter ID:EPDNEW_R10186
Type:multiple initiation site
Name:Slc22a17_1
Description:solute carrier family 22, member 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01533,576,336 - 33,576,396EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631405 AgrOrtholog
BioCyc Gene G2FUF-13767 BioCyc
Ensembl Genes ENSRNOG00000016414 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000021851 ENTREZGENE
  ENSRNOT00000104533 ENTREZGENE
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7312276 IMAGE-MGC_LOAD
InterPro MFS_dom UniProtKB/Swiss-Prot
  MFS_sugar_transport-like UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  Sugar_transporter_CS UniProtKB/Swiss-Prot
KEGG Report rno:305886 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116043 IMAGE-MGC_LOAD
NCBI Gene 305886 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/Swiss-Prot
Pfam Sugar_tr UniProtKB/Swiss-Prot
PhenoGen Slc22a17 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot
  SUGAR_TRANSPORT_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016414 RatGTEx
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTM9_RAT UniProtKB/TrEMBL
  A0A8I5ZZ20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLF6_RAT UniProtKB/TrEMBL
  A0A8L2QB08 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LHY4_RAT UniProtKB/TrEMBL
  A6KGX4_RAT UniProtKB/TrEMBL
  Q4KLP1 ENTREZGENE
  Q9P290 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q4KLP1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-19 Slc22a17  solute carrier family 22, member 17  Slc22a17  solute carrier family 22 (organic cation transporter), member 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-11 Slc22a17  solute carrier family 22 (organic cation transporter), member 17  Boct  brain-specific organic ion transporter  Symbol and Name updated to reflect Human and Mouse nomenclature 625702 APPROVED