SLC22A17 (solute carrier family 22 member 17) - Rat Genome Database

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Gene: SLC22A17 (solute carrier family 22 member 17) Pan paniscus
Analyze
Symbol: SLC22A17
Name: solute carrier family 22 member 17
RGD ID: 11672449
Description: ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN siderophore transport (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN organelle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,778,025 - 24,784,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,994,518 - 24,001,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,165,419 - 4,172,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,260,079 - 22,266,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,260,079 - 22,266,667 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC22A17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,778,025 - 24,784,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,994,518 - 24,001,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,165,419 - 4,172,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,260,079 - 22,266,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,260,079 - 22,266,667 (-)Ensemblpanpan1.1panPan2
SLC22A17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,346,311 - 23,352,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,346,314 - 23,352,912 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,815,520 - 23,822,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,885,367 - 22,891,920 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,885,367 - 22,891,319NCBI
Celera143,678,238 - 3,684,791 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,931,941 - 3,938,494 (-)NCBIHuRef
CHM1_11423,814,199 - 23,820,752 (-)NCBICHM1_1
T2T-CHM13v2.01417,547,327 - 17,553,903 (-)NCBIT2T-CHM13v2.0
Slc22a17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,144,184 - 55,154,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,143,761 - 55,150,589 (-)EnsemblGRCm39 Ensembl
GRCm381454,906,727 - 54,913,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,906,304 - 54,913,132 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,525,564 - 55,531,969 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,860,950 - 53,867,287 (-)NCBIMGSCv36mm8
Celera1452,713,032 - 52,719,445 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1427.99NCBI
Slc22a17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,352,273 - 32,358,780 (-)NCBIGRCr8
mRatBN7.21528,382,285 - 28,389,435 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,382,292 - 28,388,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,227,996 - 30,234,484 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,375,198 - 31,381,686 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,617,888 - 29,624,383 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,569,824 - 33,576,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,569,843 - 33,576,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,456,770 - 37,463,918 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,008,690 - 33,015,184 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,024,383 - 33,030,880 (-)NCBI
Celera1527,960,106 - 27,966,600 (-)NCBICelera
Cytogenetic Map15p13NCBI
SLC22A17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,594,572 - 3,600,380 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,594,572 - 3,600,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,542,906 - 3,549,350 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,702,403 - 3,708,849 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,702,410 - 3,708,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,394,004 - 3,400,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,455,276 - 3,461,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,717,453 - 3,723,900 (-)NCBIUU_Cfam_GSD_1.0
Slc22a17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,359,508 - 35,365,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,022,971 - 1,029,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,023,026 - 1,029,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,734,871 - 75,741,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,734,724 - 75,741,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,999,765 - 81,006,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,717,829 - 23,724,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605922,693,398 - 22,700,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,209,864 - 9,220,087 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,210,015 - 9,216,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036909   ⟹   ENSPPAP00000014229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1422,260,079 - 22,266,667 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036910   ⟹   ENSPPAP00000014230
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1422,262,020 - 22,265,954 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036916   ⟹   ENSPPAP00000014236
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1422,263,043 - 22,266,481 (-)Ensembl
RefSeq Acc Id: XM_034937301   ⟹   XP_034793192
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21524,778,025 - 24,784,606 (-)NCBI
NHGRI_mPanPan11423,994,518 - 24,001,093 (-)NCBI
Mhudiblu_PPA_v0144,165,419 - 4,172,002 (-)NCBI
RefSeq Acc Id: XM_055097347   ⟹   XP_054953322
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21524,778,025 - 24,784,604 (-)NCBI
NHGRI_mPanPan11423,994,518 - 24,001,091 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034793192 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953322 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014229.1
  ENSPPAP00000014230.1
  ENSPPAP00000014236.1
Reference Protein Sequences
RefSeq Acc Id: XP_034793192   ⟸   XM_034937301
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AAE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000014236   ⟸   ENSPPAT00000036916
RefSeq Acc Id: ENSPPAP00000014230   ⟸   ENSPPAT00000036910
RefSeq Acc Id: ENSPPAP00000014229   ⟸   ENSPPAT00000036909
RefSeq Acc Id: XP_054953322   ⟸   XM_055097347
- Peptide Label: isoform X2
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030257 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036909.1 UniProtKB/TrEMBL
  ENSPPAT00000036910.1 UniProtKB/TrEMBL
  ENSPPAT00000036916.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
NCBI Gene SLC22A17 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 17 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A2R9AAE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AAE3_PANPA UniProtKB/TrEMBL
  A0A2R9ABG7_PANPA UniProtKB/TrEMBL