Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Sdr9c7 | Rat | autosomal recessive congenital ichthyosis 13 | | ISS | Sdr9c7 (Mus musculus) | 13592920 | OMIM:617574 | MouseDO | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Sdr9c7 | Rat | autosomal recessive congenital ichthyosis 13 | | ISS | Sdr9c7 (Mus musculus) | 13592920 | OMIM:617574 | MouseDO | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
| 3. | GOA pipeline | RGD automated data pipeline |
| 4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| 6. | Identification of a mouse short-chain dehydrogenase/reductase gene, retinol dehydrogenase-similar. Function of non-catalytic amino acid residues in enzyme activity. | Song MS, etal., J Biol Chem 2003 Oct 10;278(41):40079-87. Epub 2003 Jul 10. |
| Sdr9c7 (Rattus norvegicus - Norway rat) |
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| SDR9C7 (Homo sapiens - human) |
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| Sdr9c7 (Mus musculus - house mouse) |
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| Sdr9c7 (Chinchilla lanigera - long-tailed chinchilla) |
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| SDR9C7 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| SDR9C7 (Canis lupus familiaris - dog) |
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| Sdr9c7 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| SDR9C7 (Sus scrofa - pig) |
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| SDR9C7 (Chlorocebus sabaeus - green monkey) |
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| Sdr9c7 (Heterocephalus glaber - naked mole-rat) |
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| Sdr9c7 (Rattus rattus - black rat) |
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Variants in Sdr9c7
172 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
| RH134392 |
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| BE106097 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16 | 12 | 66 | 129 | 91 | 90 | 59 | 71 | 59 | 6 | 324 | 168 | 9 | 102 | 73 | 87 | 31 | 1 | 1 |
| RefSeq Transcripts | XM_006226054 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006226055 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006241515 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006241516 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008765432 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008765433 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008776452 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008776453 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595219 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595220 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595221 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603433 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603434 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603435 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080514 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063264604 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AY044435 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| CH473950 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000005919 ⟹ ENSRNOP00000005919 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000147229 ⟹ ENSRNOP00000100491 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_006241515 ⟹ XP_006241577 | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_006241516 ⟹ XP_006241578 | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_008765432 ⟹ XP_008763654 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017595219 ⟹ XP_017450708 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039080513 ⟹ XP_038936441 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080514 ⟹ XP_038936442 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_063264604 ⟹ XP_063120674 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Protein RefSeqs | XP_006241577 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006241578 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008763654 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017450708 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936441 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936442 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063120674 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAK95857 | (Get FASTA) | NCBI Sequence Viewer |
| EDM16444 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000100491 | ||
| ENSRNOP00000100491.1 |
| RefSeq Acc Id: | XP_006241578 ⟸ XM_006241516 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1MAS7 (UniProtKB/TrEMBL), A6HQX8 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_006241577 ⟸ XM_006241515 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1MAS7 (UniProtKB/TrEMBL), A6HQX8 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_008763654 ⟸ XM_008765432 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1MAS7 (UniProtKB/TrEMBL), A6HQX8 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_017450708 ⟸ XM_017595219 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1MAS7 (UniProtKB/TrEMBL), A6HQX8 (UniProtKB/TrEMBL) |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000005919 ⟸ ENSRNOT00000005919 |
| RefSeq Acc Id: | XP_038936441 ⟸ XM_039080513 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_038936442 ⟸ XM_039080514 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_063120674 ⟸ XM_063264604 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1MAS7 (UniProtKB/TrEMBL), A6HQX8 (UniProtKB/TrEMBL) |
| Ensembl Acc Id: | ENSRNOP00000100491 ⟸ ENSRNOT00000147229 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-F1MAS7-F1-model_v2 | AlphaFold | F1MAS7 | 1-313 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| RGD ID: | 13695281 | ||||||||
| Promoter ID: | EPDNEW_R5797 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Sdr9c7_1 | ||||||||
| Description: | short chain dehydrogenase/reductase family 9C, member 7 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| Database | Acc Id | Source(s) |
| AGR Gene | RGD:628716 | AgrOrtholog |
| BioCyc Gene | G2FUF-33714 | BioCyc |
| Ensembl Genes | ENSRNOG00000004459 | Ensembl |
| ENSRNOG00000086854 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000147229 | ENTREZGENE |
| ENSRNOT00000147229.1 | UniProtKB/TrEMBL | |
| Gene3D-CATH | NAD(P)-binding Rossmann-like Domain | UniProtKB/TrEMBL |
| InterPro | Glc/ribitol_DH | UniProtKB/TrEMBL |
| NAD(P)-bd_dom_sf | UniProtKB/TrEMBL | |
| Sc_DH/Rdtase_CS | UniProtKB/TrEMBL | |
| NCBI Gene | 259235 | ENTREZGENE |
| PANTHER | PTHR43313:SF5 | UniProtKB/TrEMBL |
| SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C | UniProtKB/TrEMBL | |
| Pfam | adh_short | UniProtKB/TrEMBL |
| PhenoGen | Sdr9c7 | PhenoGen |
| PRINTS | GDHRDH | UniProtKB/TrEMBL |
| SDRFAMILY | UniProtKB/TrEMBL | |
| PROSITE | ADH_SHORT | UniProtKB/TrEMBL |
| RatGTEx | ENSRNOG00000004459 | RatGTEx |
| ENSRNOG00000086854 | RatGTEx | |
| Superfamily-SCOP | SSF51735 | UniProtKB/TrEMBL |
| UniProt | A0ABK0LHZ4_RAT | UniProtKB/TrEMBL |
| A6HQX8 | ENTREZGENE, UniProtKB/TrEMBL | |
| F1MAS7 | ENTREZGENE |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2010-05-07 | Sdr9c7 | short chain dehydrogenase/reductase family 9C, member 7 | Sdr-o | orphan short-chain dehydrogenase / reductase | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-09-24 | Sdr-o | orphan short-chain dehydrogenase / reductase | Rdh20 | retinol dehydrogenase 20 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-03-11 | Rdh20 | retinol dehydrogenase 20 | Sdro | orphan short chain dehydrogenase/reductase | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-01-20 | Sdro | orphan short chain dehydrogenase/reductase | Rdhs | retinol dehydrogenase similar protein | Symbol and Name updated | 1299863 | APPROVED |