Foxj1 (forkhead box J1) - Rat Genome Database

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Gene: Foxj1 (forkhead box J1) Rattus norvegicus
Analyze
Symbol: Foxj1 (Ensembl: AABR07030823.1)
Name: forkhead box J1
RGD ID: 621764
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including cellular response to insulin-like growth factor stimulus; response to 2,3,7,8-tetrachlorodibenzodioxine; and response to estradiol. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 43. Orthologous to human FOXJ1 (forkhead box J1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: forkhead box protein J1; hepatocyte nuclear factor 3 forkhead homolog 4; Hfh-4; Hfh4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,065,163 - 102,069,945 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10102,065,170 - 102,069,241 (-)EnsemblGRCr8
mRatBN7.210101,566,299 - 101,570,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10106,622,776 - 106,626,846 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,085,863 - 106,089,933 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,487,207 - 101,491,279 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,282,090 - 105,289,396 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010104,946,564 - 104,980,556 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera10100,138,561 - 100,142,396 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (IEA,ISO)
axoneme assembly  (IEA,ISO,ISS)
brain development  (IEA,ISO)
cell maturation  (ISO)
cell projection organization  (IEA)
cellular response to insulin-like growth factor stimulus  (IEP)
central tolerance induction  (IEA,ISO)
ciliary basal body organization  (IEA,ISO,ISS)
cilium assembly  (IEA,ISO,ISS)
determination of left/right symmetry  (IEA,ISO,ISS)
DNA-templated transcription  (IEA)
epithelium development  (IEA,ISO)
establishment of apical/basal cell polarity  (ISO)
gene expression  (ISO)
glomerular parietal epithelial cell development  (IEA,ISO)
heart development  (ISO)
humoral immune response  (IEA,ISO)
intracellular protein localization  (IEA,ISO,ISS)
left/right pattern formation  (ISO)
leukocyte migration  (IEA,ISO)
lung epithelium development  (IEA,ISO)
metanephric part of ureteric bud development  (IEA,ISO)
motile cilium assembly  (IEA,ISO)
negative regulation of B cell activation  (IEA,ISO)
negative regulation of germinal center formation  (IEA,ISO)
negative regulation of humoral immune response mediated by circulating immunoglobulin  (IEA,ISO)
negative regulation of interleukin-6 production  (IEA,ISO)
negative regulation of non-canonical NF-kappaB signal transduction  (IEA,ISO)
negative regulation of T cell differentiation in thymus  (IEA,ISO)
negative regulation of T cell proliferation  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of central B cell tolerance induction  (IEA,ISO)
positive regulation of DNA-templated transcription  (IEA,ISO,ISS)
positive regulation of lung ciliated cell differentiation  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO,ISS)
regulation of DNA-templated transcription  (IEA)
regulation of epithelial cell differentiation  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to 2,3,7,8-tetrachlorodibenzodioxine  (IEP)
response to estradiol  (IEP)
spermatogenesis  (IEP)

Cellular Component
nucleus  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Primary structure of hepatocyte nuclear factor/forkhead homologue 4 and characterization of gene expression in the developing respiratory and reproductive epithelium. Hackett BP, etal., Proc Natl Acad Sci U S A 1995 May 9;92(10):4249-53.
4. Temporal and anatomical sensitivities to the aryl hydrocarbon receptor agonist 2,3,7,8-tetrachlorodibenzo-p-dioxin leading to premature acyclicity with age in rats. Jablonska O, etal., Int J Androl. 2010 Jan 4.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Role of foxj1 and estrogen receptor alpha in ciliated epithelial cell differentiation of the neonatal oviduct. Okada A, etal., J Mol Endocrinol. 2004 Jun;32(3):615-25.
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Neuroprotective gene expression profiles in ischemic cortical cultures preconditioned with IGF-1 or bFGF. Yoshida E, etal., Brain Res Mol Brain Res. 2004 Nov 24;131(1-2):33-50.
Additional References at PubMed
PMID:9096351   PMID:9530170   PMID:9739041   PMID:10873152   PMID:11724907   PMID:14625387   PMID:14963332   PMID:14996907   PMID:16002694   PMID:16339515   PMID:16574095   PMID:17008636  
PMID:17383628   PMID:17488776   PMID:20539013   PMID:21347518   PMID:22357932   PMID:23515839   PMID:23603178   PMID:25807483   PMID:27660208   PMID:27914912   PMID:27965440   PMID:28666954  
PMID:31630787  


Genomics

Comparative Map Data
Foxj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,065,163 - 102,069,945 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10102,065,170 - 102,069,241 (-)EnsemblGRCr8
mRatBN7.210101,566,299 - 101,570,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10106,622,776 - 106,626,846 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,085,863 - 106,089,933 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,487,207 - 101,491,279 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,282,090 - 105,289,396 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010104,946,564 - 104,980,556 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera10100,138,561 - 100,142,396 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
FOXJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,136,333 - 76,141,245 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,136,333 - 76,141,245 (-)Ensemblhg38GRCh38
GRCh371774,132,414 - 74,137,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,644,009 - 71,648,161 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341771,644,011 - 71,648,161NCBI
Celera1770,726,321 - 70,731,288 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,561,375 - 69,566,342 (-)NCBIHuRef
CHM1_11774,197,328 - 74,202,294 (-)NCBICHM1_1
T2T-CHM13v2.01777,032,876 - 77,037,788 (-)NCBIT2T-CHM13v2.0
Foxj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,221,530 - 116,226,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,221,530 - 116,226,225 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811116,330,704 - 116,335,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,330,704 - 116,335,399 (-)Ensemblmm10GRCm38
MGSCv3711116,192,018 - 116,196,668 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611116,146,794 - 116,151,437 (-)NCBIMGSCv36mm8
Celera11128,095,035 - 128,099,811 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.16NCBI
Foxj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,127,551 - 6,132,302 (+)Ensembl
ChiLan1.0NW_0049555066,127,551 - 6,132,302 (+)NCBIChiLan1.0ChiLan1.0
FOXJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,179,721 - 92,184,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,004,916 - 97,009,875 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,084,920 - 70,089,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,637,615 - 75,642,571 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,638,634 - 75,641,666 (-)EnsemblpanPan2panpan1.1
FOXJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,512,898 - 4,517,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,513,628 - 4,517,756 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha95,193,269 - 5,198,295 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.095,183,268 - 5,188,294 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,183,630 - 5,188,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,223,122 - 5,228,148 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,332,544 - 5,337,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,393,019 - 5,398,045 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Foxj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,122,576 - 5,127,166 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,284,781 - 1,289,361 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,284,799 - 1,288,898 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,307,374 - 5,312,106 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1125,307,370 - 5,312,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,211,688 - 5,216,414 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,536,973 - 45,544,331 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,539,510 - 45,544,299 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607716,286,720 - 16,291,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,025,793 - 6,030,486 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248016,025,756 - 6,030,487 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Foxj1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1967,734,625 - 67,739,331 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Foxj1
24 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat

Markers in Region
AU049465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,572,087 - 101,572,235 (+)MAPPERmRatBN7.2
Rnor_6.010105,291,264 - 105,291,411NCBIRnor6.0
Rnor_5.010104,955,781 - 104,955,928UniSTSRnor5.0
Celera10100,144,234 - 100,144,381UniSTS
RH135351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,574,034 - 101,574,238 (+)MAPPERmRatBN7.2
Rnor_6.010105,293,211 - 105,293,414NCBIRnor6.0
Rnor_5.010104,957,728 - 104,957,931UniSTSRnor5.0
Celera10100,146,181 - 100,146,384UniSTS
Foxj1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,567,503 - 101,567,764 (+)MAPPERmRatBN7.2
Rnor_6.010105,283,295 - 105,283,554NCBIRnor6.0
Rnor_5.010104,947,769 - 104,948,028UniSTSRnor5.0
Celera10100,139,766 - 100,140,026UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 17 36 60 113 78 1 42 28 32 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000072687   ⟹   ENSRNOP00000092642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10102,065,170 - 102,069,241 (-)Ensembl
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)Ensembl
RefSeq Acc Id: NM_053832   ⟹   NP_446284
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,065,170 - 102,069,241 (-)NCBI
mRatBN7.210101,566,299 - 101,570,370 (-)NCBI
Rnor_6.010105,282,090 - 105,289,396 (-)NCBI
Rnor_5.010104,946,564 - 104,980,556 (-)NCBI
Celera10100,138,561 - 100,142,396 (-)RGD
Sequence:
RefSeq Acc Id: XM_063268304   ⟹   XP_063124374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,065,163 - 102,069,945 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446284 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124374 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC37671 (Get FASTA)   NCBI Sequence Viewer  
  EDM06665 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092642
GenBank Protein Q63247 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446284   ⟸   NM_053832
- UniProtKB: Q63247 (UniProtKB/Swiss-Prot),   A0A8I6GK97 (UniProtKB/TrEMBL),   A6HKW0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000092642   ⟸   ENSRNOT00000072687
RefSeq Acc Id: XP_063124374   ⟸   XM_063268304
- Peptide Label: isoform X1
- UniProtKB: Q63247 (UniProtKB/Swiss-Prot),   A0A8I6GK97 (UniProtKB/TrEMBL),   A6HKW0 (UniProtKB/TrEMBL)
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63247-F1-model_v2 AlphaFold Q63247 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621764 AgrOrtholog
BioCyc Gene G2FUF-22613 BioCyc
Ensembl Genes ENSRNOG00000046001 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000072687 ENTREZGENE
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro FH_FOXJ1 UniProtKB/Swiss-Prot
  Fork_head_dom UniProtKB/Swiss-Prot
  FOXJ1 UniProtKB/Swiss-Prot
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:116557 UniProtKB/Swiss-Prot
NCBI Gene 116557 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN J1 UniProtKB/Swiss-Prot
  FORKHEAD BOX PROTEIN J1 UniProtKB/Swiss-Prot
Pfam Forkhead UniProtKB/Swiss-Prot
PhenoGen Foxj1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot
  FORK_HEAD_2 UniProtKB/Swiss-Prot
  FORK_HEAD_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000046001 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
UniProt A0A8I6GK97 ENTREZGENE, UniProtKB/TrEMBL
  A6HKW0 ENTREZGENE, UniProtKB/TrEMBL
  FOXJ1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Foxj1  forkhead box J1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Foxj1  forkhead box J1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression 2.4 kb mRNA expressed in lung, testis, oviduct, brain, peripheral nervous system, and trachea 728378
gene_process may play a role in regulating stage-specific gene expression and cell-fate determination during lung development and spermatogenesis 728378
gene_product member of the winged helix/forkhead family of transcription factors 728378