Pdzk1ip1 (PDZK1 interacting protein 1) - Rat Genome Database

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Gene: Pdzk1ip1 (PDZK1 interacting protein 1) Rattus norvegicus
Analyze
Symbol: Pdzk1ip1
Name: PDZK1 interacting protein 1
RGD ID: 620952
Description: Predicted to be located in apical plasma membrane. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 17 kDa membrane-associated protein; Dd96; Map17; membrane-associated protein 17; PDZK1-interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,841,586 - 133,859,894 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5133,841,313 - 133,859,893 (+)EnsemblGRCr8
mRatBN7.25128,618,050 - 128,623,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,618,237 - 128,623,131 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5131,300,791 - 131,305,577 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,030,446 - 133,035,232 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,052,131 - 133,056,917 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,895,849 - 133,900,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,896,141 - 133,900,726 (+)Ensemblrn6Rnor6.0
Rnor_5.05137,673,875 - 137,692,231 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45135,462,146 - 135,466,968 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5127,263,294 - 127,268,116 (+)NCBICelera
RGSC_v3.15135,467,371 - 135,472,194 (+)NCBI
Cytogenetic Map5q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dichloroacetic acid  (ISO)
diethyl phthalate  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fulvestrant  (ISO)
gemcitabine  (ISO)
hydrogen peroxide  (ISO)
lead diacetate  (ISO)
Monobutylphthalate  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP,ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
undecane  (EXP)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rapid isolation of tissue-specific genes from rat kidney. Hu E, etal., Exp Nephrol 2001 Mar-Apr;9(2):156-64.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12812916   PMID:19056867   PMID:23376485  


Genomics

Comparative Map Data
Pdzk1ip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,841,586 - 133,859,894 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5133,841,313 - 133,859,893 (+)EnsemblGRCr8
mRatBN7.25128,618,050 - 128,623,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,618,237 - 128,623,131 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5131,300,791 - 131,305,577 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,030,446 - 133,035,232 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,052,131 - 133,056,917 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,895,849 - 133,900,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,896,141 - 133,900,726 (+)Ensemblrn6Rnor6.0
Rnor_5.05137,673,875 - 137,692,231 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45135,462,146 - 135,466,968 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5127,263,294 - 127,268,116 (+)NCBICelera
RGSC_v3.15135,467,371 - 135,472,194 (+)NCBI
Cytogenetic Map5q35NCBI
PDZK1IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,183,582 - 47,190,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,183,582 - 47,191,398 (-)Ensemblhg38GRCh38
GRCh37147,649,254 - 47,655,708 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,421,848 - 47,428,358 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34147,361,280 - 47,367,791NCBI
Celera145,935,537 - 45,942,046 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,765,044 - 45,772,416 (-)NCBIHuRef
CHM1_1147,765,993 - 47,772,669 (-)NCBICHM1_1
T2T-CHM13v2.0147,061,100 - 47,068,446 (-)NCBIT2T-CHM13v2.0
Pdzk1ip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,945,905 - 114,951,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,945,905 - 114,951,096 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384115,088,708 - 115,093,894 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,088,708 - 115,093,899 (+)Ensemblmm10GRCm38
MGSCv374114,761,313 - 114,766,499 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364114,586,655 - 114,591,825 (+)NCBIMGSCv36mm8
Celera4113,835,857 - 113,841,041 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.75NCBI
Pdzk1ip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,339,800 - 11,344,492 (+)Ensembl
ChiLan1.0NW_00495546411,339,800 - 11,344,492 (+)NCBIChiLan1.0ChiLan1.0
PDZK1IP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,615,486 - 179,622,277 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,757,282 - 178,764,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,489,192 - 46,495,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,004,744 - 48,011,613 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,004,744 - 48,011,613 (-)EnsemblpanPan2panpan1.1
PDZK1IP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,479,519 - 13,486,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,480,548 - 13,486,524 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1513,632,018 - 13,638,435 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01513,629,015 - 13,635,434 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,629,353 - 13,635,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,428,685 - 13,435,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,496,699 - 13,503,116 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,566,206 - 13,572,624 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdzk1ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,196,711 - 62,203,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,021,568 - 28,027,924 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,021,530 - 28,027,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZK1IP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16164,314,760 - 164,321,172 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PDZK1IP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,695,031 - 85,731,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603331,348,062 - 31,355,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzk1ip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,619,471 - 5,626,002 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248595,620,568 - 5,625,664 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pdzk1ip1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1141,489,580 - 41,501,501 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pdzk1ip1
99 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:113
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000011434
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130678987145274255Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133308734140009902Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 59 123 90 90 59 79 59 6 325 161 4 101 81 91 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000011434   ⟹   ENSRNOP00000011434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5133,841,313 - 133,859,893 (+)Ensembl
mRatBN7.2 Ensembl5128,618,237 - 128,623,131 (+)Ensembl
Rnor_6.0 Ensembl5133,896,141 - 133,900,726 (+)Ensembl
RefSeq Acc Id: NM_130401   ⟹   NP_569085
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,855,072 - 133,859,894 (+)NCBI
mRatBN7.25128,618,309 - 128,623,131 (+)NCBI
Rnor_6.05133,895,898 - 133,900,720 (+)NCBI
Rnor_5.05137,673,875 - 137,692,231 (+)NCBI
RGSC_v3.45135,462,146 - 135,466,968 (+)RGD
Celera5127,263,294 - 127,268,116 (+)RGD
Sequence:
RefSeq Acc Id: XM_039110842   ⟹   XP_038966770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,841,586 - 133,859,894 (+)NCBI
mRatBN7.25128,618,050 - 128,623,131 (+)NCBI
RefSeq Acc Id: XM_039110844   ⟹   XP_038966772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,856,137 - 133,859,894 (+)NCBI
mRatBN7.25128,619,374 - 128,623,131 (+)NCBI
RefSeq Acc Id: NP_569085   ⟸   NM_130401
- UniProtKB: Q923S2 (UniProtKB/Swiss-Prot),   A6JZ32 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011434   ⟸   ENSRNOT00000011434
RefSeq Acc Id: XP_038966770   ⟸   XM_039110842
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q5J1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966772   ⟸   XM_039110844
- Peptide Label: isoform X2
- UniProtKB: A6JZ34 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q923S2-F1-model_v2 AlphaFold Q923S2 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693915
Promoter ID:EPDNEW_R4440
Type:initiation region
Name:Pdzk1ip1_1
Description:PDZK1 interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05133,896,142 - 133,896,202EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620952 AgrOrtholog
BioCyc Gene G2FUF-40299 BioCyc
Ensembl Genes ENSRNOG00000008161 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000011434 ENTREZGENE
InterPro PDZK1IP1/SMIM24 UniProtKB/Swiss-Prot
KEGG Report rno:81916 UniProtKB/Swiss-Prot
NCBI Gene 81916 ENTREZGENE
PANTHER PTHR15296 UniProtKB/Swiss-Prot
  PTHR15296:SF0 UniProtKB/Swiss-Prot
Pfam MAP17 UniProtKB/Swiss-Prot
PhenoGen Pdzk1ip1 PhenoGen
RatGTEx ENSRNOG00000008161 RatGTEx
UniProt A0A8L2Q5J1 ENTREZGENE, UniProtKB/TrEMBL
  A6JZ31_RAT UniProtKB/TrEMBL
  A6JZ32 ENTREZGENE, UniProtKB/TrEMBL
  A6JZ33_RAT UniProtKB/TrEMBL
  A6JZ34 ENTREZGENE, UniProtKB/TrEMBL
  PDZ1I_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Pdzk1ip1  PDZK1 interacting protein 1  Map17  membrane-associated protein 17  Symbol and Name updated 1299863 APPROVED
2005-01-20 Map17  membrane-associated protein 17      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Map17  membrane-associated protein 17      Symbol and Name status set to provisional 70820 PROVISIONAL