Pdzk1ip1 (PDZK1 interacting protein 1) - Rat Genome Database

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Gene: Pdzk1ip1 (PDZK1 interacting protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Pdzk1ip1
Name: PDZK1 interacting protein 1
RGD ID: 12532967
Description: ASSOCIATED WITH genetic disease (ortholog); Prostatic Neoplasms (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PDZK1-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,196,711 - 62,203,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,021,568 - 28,027,924 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,021,530 - 28,027,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Pdzk1ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,196,711 - 62,203,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,021,568 - 28,027,924 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,021,530 - 28,027,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZK1IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,183,582 - 47,190,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,183,582 - 47,191,044 (-)EnsemblGRCh38hg38GRCh38
GRCh37147,649,254 - 47,655,708 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,421,848 - 47,428,358 (-)NCBINCBI36Build 36hg18NCBI36
Build 34147,361,280 - 47,367,791NCBI
Celera145,935,537 - 45,942,046 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,765,044 - 45,772,416 (-)NCBIHuRef
CHM1_1147,765,993 - 47,772,669 (-)NCBICHM1_1
T2T-CHM13v2.0147,061,100 - 47,068,446 (-)NCBIT2T-CHM13v2.0
Pdzk1ip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,945,905 - 114,951,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,945,905 - 114,951,096 (+)EnsemblGRCm39 Ensembl
GRCm384115,088,708 - 115,093,894 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,088,708 - 115,093,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv374114,761,313 - 114,766,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364114,586,655 - 114,591,825 (+)NCBIMGSCv36mm8
Celera4113,835,857 - 113,841,041 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.75NCBI
Pdzk1ip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,841,586 - 133,859,894 (+)NCBIGRCr8
mRatBN7.25128,618,050 - 128,623,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,618,237 - 128,623,131 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5131,300,791 - 131,305,577 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,030,446 - 133,035,232 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,052,131 - 133,056,917 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,895,849 - 133,900,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,896,141 - 133,900,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,673,875 - 137,692,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45135,462,146 - 135,466,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15135,467,371 - 135,472,194 (+)NCBI
Celera5127,263,294 - 127,268,116 (+)NCBICelera
Cytogenetic Map5q35NCBI
Pdzk1ip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,339,800 - 11,344,492 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,339,800 - 11,344,492 (+)NCBIChiLan1.0ChiLan1.0
PDZK1IP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,615,486 - 179,622,277 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,757,282 - 178,764,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,489,192 - 46,495,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,004,744 - 48,011,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,004,744 - 48,011,613 (-)Ensemblpanpan1.1panPan2
PDZK1IP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,479,519 - 13,486,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,480,548 - 13,486,524 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1513,632,018 - 13,638,435 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01513,629,015 - 13,635,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,629,353 - 13,635,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,428,685 - 13,435,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,496,699 - 13,503,116 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,566,206 - 13,572,624 (+)NCBIUU_Cfam_GSD_1.0
PDZK1IP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16164,314,760 - 164,321,172 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PDZK1IP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,695,031 - 85,731,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603331,348,062 - 31,355,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzk1ip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,619,471 - 5,626,002 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248595,620,568 - 5,625,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021733362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028309   ⟹   ENSSTOP00000016790
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647428,021,568 - 28,027,924 (-)Ensembl
RefSeq Acc Id: XM_021733362   ⟹   XP_021589037
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505862,196,711 - 62,203,217 (-)NCBI
SpeTri2.0NW_00493647428,021,530 - 28,027,070 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021589037 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016790.1
GenBank Protein KAG3283095 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021589037   ⟸   XM_021733362
- UniProtKB: I3MXE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000016790   ⟸   ENSSTOT00000028309


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024038 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028309.2 UniProtKB/TrEMBL
InterPro PDZK1IP1/SMIM24 UniProtKB/TrEMBL
NCBI Gene Pdzk1ip1 ENTREZGENE
PANTHER PTHR15296 UniProtKB/TrEMBL
  PTHR15296:SF0 UniProtKB/TrEMBL
Pfam MAP17 UniProtKB/TrEMBL
UniProt I3MXE5 ENTREZGENE, UniProtKB/TrEMBL