Galp (galanin-like peptide) - Rat Genome Database

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Gene: Galp (galanin-like peptide) Rattus norvegicus
Analyze
Symbol: Galp
Name: galanin-like peptide
RGD ID: 620187
Description: Predicted to enable hormone activity. Involved in response to insulin. Predicted to be located in extracellular region. Biomarker of obesity. Orthologous to human GALP (galanin like peptide); INTERACTS WITH ammonium chloride; decabromodiphenyl ether; deoxynivalenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AF188491; galanin-like peptide precursor
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,717,110 - 76,741,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl176,717,110 - 76,735,354 (-)EnsemblGRCr8
mRatBN7.2167,684,023 - 67,703,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,684,025 - 67,702,269 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx173,035,339 - 73,054,444 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,672,487 - 81,691,600 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0174,865,064 - 74,884,095 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0171,352,417 - 71,374,457 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,352,419 - 71,373,605 (-)Ensemblrn6Rnor6.0
Rnor_5.0172,745,906 - 72,767,768 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,117,691 - 66,137,293 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera165,426,487 - 65,445,571 (-)NCBICelera
RGSC_v3.1166,195,803 - 66,215,404 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Regulation of galanin-like peptide gene expression by pituitary hormones and their downstream targets. Cunnningham MJ, etal., J Neuroendocrinol 2004 Jan;16(1):10-8.
2. Effects of diabetes and insulin on the expression of galanin-like peptide in the hypothalamus of the rat. Fraley GS, etal., Diabetes 2004 May;53(5):1237-42.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Activation of the sympathetic nervous system by galanin-like peptide--a possible link between leptin and metabolism. Hansen KR, etal., Endocrinology 2003 Nov;144(11):4709-17. Epub 2003 Jul 24.
5. A role for galanin-like peptide in the integration of feeding, body weight regulation, and reproduction in the mouse. Krasnow SM, etal., Endocrinology 2003 Mar;144(3):813-22.
6. Changes in hypothalamic expression levels of galanin-like peptide in rat and mouse models support that it is a leptin-target peptide. Kumano S, etal., Endocrinology 2003 Jun;144(6):2634-43.
7. Intracerebroventricular galanin-like peptide induces different brain activation compared with galanin. Lawrence CB, etal., Endocrinology 2003 Sep;144(9):3977-84.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Isolation and cDNA cloning of a novel galanin-like peptide (GALP) from porcine hypothalamus. Ohtaki T, etal., J Biol Chem 1999 Dec 24;274(52):37041-5.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Galanin-like peptide stimulates the release of gonadotropin-releasing hormone in vitro and may mediate the effects of leptin on the hypothalamo-pituitary-gonadal axis. Seth A, etal., Endocrinology 2004 Feb;145(2):743-50. Epub 2003 Oct 23.
14. Galanin-like peptide mRNA alterations in arcuate nucleus and neural lobe of streptozotocin-diabetic and obese zucker rats. Further evidence for leptin-dependent and independent regulation. Shen J and Gundlach AL, Neuroendocrinology. 2004;79(6):327-37. Epub 2004 Jul 13.
15. Galanin-like peptide rescues reproductive function in the diabetic rat. Stoyanovitch AG, etal., Diabetes. 2005 Aug;54(8):2471-6.
16. Galanin-like peptide is target for regulation by orexin in the rat hypothalamus. Takenoya F, etal., Neurosci Lett 2003 Apr 17;340(3):209-12.
Additional References at PubMed
PMID:15203243   PMID:15944031   PMID:17485169   PMID:17916390   PMID:17950941   PMID:18775887   PMID:19124073   PMID:22681480   PMID:23537644  


Genomics

Comparative Map Data
Galp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,717,110 - 76,741,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl176,717,110 - 76,735,354 (-)EnsemblGRCr8
mRatBN7.2167,684,023 - 67,703,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,684,025 - 67,702,269 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx173,035,339 - 73,054,444 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,672,487 - 81,691,600 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0174,865,064 - 74,884,095 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0171,352,417 - 71,374,457 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,352,419 - 71,373,605 (-)Ensemblrn6Rnor6.0
Rnor_5.0172,745,906 - 72,767,768 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,117,691 - 66,137,293 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera165,426,487 - 65,445,571 (-)NCBICelera
RGSC_v3.1166,195,803 - 66,215,404 (-)NCBI
Cytogenetic Map1q12NCBI
GALP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381956,176,008 - 56,185,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1956,176,008 - 56,185,775 (+)Ensemblhg38GRCh38
GRCh371956,687,377 - 56,697,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,379,201 - 61,388,956 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1953,731,097 - 53,740,851 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1952,997,294 - 53,007,009 (+)NCBIHuRef
CHM1_11956,680,961 - 56,690,714 (+)NCBICHM1_1
T2T-CHM13v2.01959,274,899 - 59,284,560 (+)NCBIT2T-CHM13v2.0
Galp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3976,200,089 - 6,219,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl76,200,089 - 6,219,136 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3876,197,090 - 6,216,137 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl76,197,090 - 6,216,137 (+)Ensemblmm10GRCm38
MGSCv3776,148,692 - 6,167,739 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3675,800,177 - 5,819,224 (+)NCBIMGSCv36mm8
MGSCv3675,569,501 - 5,585,498 (+)NCBIMGSCv36mm8
Celera75,934,044 - 5,950,812 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.59NCBI
GALP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22062,463,617 - 62,474,999 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11964,255,311 - 64,266,749 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01953,201,889 - 53,212,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,996,543 - 62,007,333 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,996,543 - 62,007,333 (+)EnsemblpanPan2panpan1.1
GALP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11101,722,834 - 101,729,913 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1101,722,805 - 101,730,046 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1101,907,803 - 101,914,624 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01102,367,878 - 102,374,746 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,367,785 - 102,373,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,006,454 - 102,013,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01101,724,211 - 101,731,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01102,480,837 - 102,487,724 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GALP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl660,485,649 - 60,493,584 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1660,485,612 - 60,493,591 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2655,726,463 - 55,732,573 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,762,469 - 48,775,642 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,764,036 - 48,775,136 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660451,775,553 - 1,788,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12179,913,276 - 179,931,292 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Galp
106 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:58
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000034854
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
6 2 5 45 23 18 6 24 6 6 65 39 34 14 43 12 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000034854   ⟹   ENSRNOP00000038710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl176,717,110 - 76,735,354 (-)Ensembl
mRatBN7.2 Ensembl167,684,025 - 67,702,269 (-)Ensembl
Rnor_6.0 Ensembl171,352,419 - 71,373,605 (-)Ensembl
RefSeq Acc Id: NM_022633   ⟹   NP_072155
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8176,717,110 - 76,736,206 (-)NCBI
mRatBN7.2167,684,023 - 67,703,121 (-)NCBI
Rnor_6.0171,352,417 - 71,374,457 (-)NCBI
Rnor_5.0172,745,906 - 72,767,768 (-)NCBI
RGSC_v3.4166,117,691 - 66,137,293 (-)RGD
Celera165,426,487 - 65,445,571 (-)RGD
Sequence:
RefSeq Acc Id: XM_063272781   ⟹   XP_063128851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8176,719,267 - 76,741,056 (-)NCBI
RefSeq Acc Id: XM_063272782   ⟹   XP_063128852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8176,717,110 - 76,741,056 (-)NCBI
Protein Sequences
Protein RefSeqs NP_072155 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128851 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128852 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF19723 (Get FASTA)   NCBI Sequence Viewer  
  EDL83176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038710
  ENSRNOP00000038710.2
GenBank Protein Q9QXQ6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_072155   ⟸   NM_022633
- Peptide Label: precursor
- UniProtKB: Q9QXQ6 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038710   ⟸   ENSRNOT00000034854
RefSeq Acc Id: XP_063128852   ⟸   XM_063272782
- Peptide Label: isoform X2
- UniProtKB: A6KS77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128851   ⟸   XM_063272781
- Peptide Label: isoform X1
Protein Domains
GALANIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXQ6-F1-model_v2 AlphaFold Q9QXQ6 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620187 AgrOrtholog
BioCyc Gene G2FUF-60920 BioCyc
Ensembl Genes ENSRNOG00000022129 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000034854 ENTREZGENE
  ENSRNOT00000034854.3 UniProtKB/Swiss-Prot
InterPro Galanin UniProtKB/Swiss-Prot
  GALP UniProtKB/Swiss-Prot
KEGG Report rno:64568 UniProtKB/Swiss-Prot
NCBI Gene 64568 ENTREZGENE
PANTHER GALANIN-LIKE PEPTIDE UniProtKB/Swiss-Prot
  PTHR20950 UniProtKB/Swiss-Prot
Pfam Galanin UniProtKB/Swiss-Prot
PhenoGen Galp PhenoGen
PROSITE GALANIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000022129 RatGTEx
UniProt A6KS77 ENTREZGENE, UniProtKB/TrEMBL
  GALP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-22 Galp  galanin-like peptide  Galp  galanin-like peptide precursor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Galp  galanin-like peptide precursor  AF188491    Symbol updated 1299863 APPROVED
2002-08-07 AF188491  galanin-like peptide precursor      Symbol and Name status set to provisional 70820 PROVISIONAL