Timm8b (translocase of inner mitochondrial membrane 8 homolog B) - Rat Genome Database

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Gene: Timm8b (translocase of inner mitochondrial membrane 8 homolog B) Rattus norvegicus
Analyze
Symbol: Timm8b
Name: translocase of inner mitochondrial membrane 8 homolog B
RGD ID: 619840
Description: Predicted to enable metal ion binding activity. Predicted to be involved in protein transport. Predicted to be located in mitochondrial inner membrane. Orthologous to human TIMM8B (translocase of inner mitochondrial membrane 8 homolog B); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ddp2; deafness dystonia protein 2 homolog; mitochondrial import inner membrane translocase subunit Tim8 B; small zinc finger-like protein DDP2; translocase of inner mitochondrial membrane 8 homolog b (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,850,737 - 59,852,117 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl859,850,728 - 59,852,962 (+)EnsemblGRCr8
mRatBN7.2850,954,350 - 50,955,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl850,954,342 - 50,955,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx856,460,042 - 56,461,420 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,738,940 - 54,740,318 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,603,216 - 52,604,594 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd860,678,342 - 60,679,720 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive862,877,226 - 62,878,604 (+)NCBILyon_Normotensive
Lyon_Hypertensive861,316,386 - 61,317,766 (+)NCBILyon_Hypertensive
F344_StmMcwi852,710,713 - 52,712,091 (+)NCBIF344_StmMcwi
Rnor_6.0855,037,750 - 55,039,130 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,037,750 - 55,039,128 (+)Ensemblrn6Rnor6.0
Rnor_5.0853,635,072 - 53,636,452 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4853,964,693 - 53,966,073 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera850,502,770 - 50,504,150 (+)NCBICelera
RGSC_v3.1853,983,759 - 53,985,125 (+)NCBI
Cytogenetic Map8q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enniatin  (EXP)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
glafenine  (EXP)
GSK-J4  (ISO)
hydralazine  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nobiletin  (ISO)
ochratoxin A  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Assembly of beta-barrel proteins in the mitochondrial outer membrane. Hohr AI, etal., Biochim Biophys Acta. 2015 Jan;1853(1):74-88. doi: 10.1016/j.bbamcr.2014.10.006. Epub 2014 Oct 8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:10611480   PMID:14651853   PMID:15277470   PMID:18614015   PMID:22871113   PMID:23580065   PMID:34800366  


Genomics

Comparative Map Data
Timm8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,850,737 - 59,852,117 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl859,850,728 - 59,852,962 (+)EnsemblGRCr8
mRatBN7.2850,954,350 - 50,955,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl850,954,342 - 50,955,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx856,460,042 - 56,461,420 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,738,940 - 54,740,318 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,603,216 - 52,604,594 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd860,678,342 - 60,679,720 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive862,877,226 - 62,878,604 (+)NCBILyon_Normotensive
Lyon_Hypertensive861,316,386 - 61,317,766 (+)NCBILyon_Hypertensive
F344_StmMcwi852,710,713 - 52,712,091 (+)NCBIF344_StmMcwi
Rnor_6.0855,037,750 - 55,039,130 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,037,750 - 55,039,128 (+)Ensemblrn6Rnor6.0
Rnor_5.0853,635,072 - 53,636,452 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4853,964,693 - 53,966,073 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera850,502,770 - 50,504,150 (+)NCBICelera
RGSC_v3.1853,983,759 - 53,985,125 (+)NCBI
Cytogenetic Map8q23NCBI
TIMM8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,084,800 - 112,086,756 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,084,800 - 112,086,798 (-)Ensemblhg38GRCh38
GRCh3711111,955,524 - 111,957,480 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,461,079 - 111,462,669 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3411111,461,081 - 111,462,669NCBI
Celera11109,108,716 - 109,110,714 (-)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,879,555 - 107,881,554 (-)NCBIHuRef
CHM1_111111,838,702 - 111,840,700 (-)NCBICHM1_1
T2T-CHM13v2.011112,095,054 - 112,097,010 (-)NCBIT2T-CHM13v2.0
Timm8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,515,227 - 50,516,620 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,515,210 - 50,516,620 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38950,603,901 - 50,605,320 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,603,910 - 50,605,320 (+)Ensemblmm10GRCm38
MGSCv37950,412,006 - 50,413,425 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36950,356,140 - 50,357,548 (+)NCBIMGSCv36mm8
Celera947,899,130 - 47,900,549 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
Timm8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,766,532 - 13,768,453 (-)Ensembl
ChiLan1.0NW_00495541213,766,532 - 13,768,453 (-)NCBIChiLan1.0ChiLan1.0
TIMM8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,835,860 - 112,839,189 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,927,766 - 113,933,506 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,971,579 - 106,973,226 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,814,655 - 110,816,980 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,815,333 - 110,816,980 (-)EnsemblpanPan2panpan1.1
TIMM8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,041,139 - 21,042,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,040,715 - 21,042,769 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha520,963,682 - 20,965,312 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0521,064,553 - 21,066,182 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,064,129 - 21,066,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,126,167 - 21,127,794 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,026,177 - 21,027,806 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,074,828 - 21,076,458 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Timm8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,334,645 - 94,336,352 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366122,369,292 - 2,371,220 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366122,369,273 - 2,370,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMM8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,787,405 - 39,790,718 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1939,788,164 - 39,790,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,629,778 - 44,632,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMM8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,441,661 - 103,443,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1103,442,144 - 103,443,611 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604322,540,564 - 22,542,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timm8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,239,046 - 7,242,090 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247847,239,046 - 7,241,790 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Timm8b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1845,076,693 - 45,078,109 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Timm8b
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:27
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000013188
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat

Markers in Region
RH127747  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,973,870 - 29,974,056 (+)MAPPERmRatBN7.2
mRatBN7.2850,955,427 - 50,955,614 (+)MAPPERmRatBN7.2
Rnor_6.0855,038,828 - 55,039,014NCBIRnor6.0
Rnor_6.0736,429,551 - 36,429,736NCBIRnor6.0
Rnor_5.0853,636,150 - 53,636,336UniSTSRnor5.0
Rnor_5.0736,491,796 - 36,491,981UniSTSRnor5.0
RGSC_v3.4732,538,544 - 32,538,729UniSTSRGSC3.4
RGSC_v3.4853,965,771 - 53,965,957UniSTSRGSC3.4
Celera850,503,848 - 50,504,034UniSTS
Celera727,047,463 - 27,047,648UniSTS
Cytogenetic Map8q23UniSTS
RH134598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,955,700 - 50,955,881 (+)MAPPERmRatBN7.2
Rnor_6.0855,039,101 - 55,039,281NCBIRnor6.0
Rnor_5.0853,636,423 - 53,636,603UniSTSRnor5.0
RGSC_v3.4853,966,044 - 53,966,224UniSTSRGSC3.4
Celera850,504,121 - 50,504,301UniSTS
Cytogenetic Map8q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013188   ⟹   ENSRNOP00000013188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl850,954,342 - 50,955,728 (+)Ensembl
Rnor_6.0 Ensembl855,037,750 - 55,039,128 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105971   ⟹   ENSRNOP00000090345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl859,850,728 - 59,852,962 (+)Ensembl
mRatBN7.2 Ensembl850,954,342 - 50,955,729 (+)Ensembl
RefSeq Acc Id: NM_022541   ⟹   NP_071986
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8859,850,737 - 59,852,117 (+)NCBI
mRatBN7.2850,954,350 - 50,955,730 (+)NCBI
Dahl_SR_JrHsd860,678,342 - 60,679,720 (+)NCBI
Lyon_Normotensive862,877,226 - 62,878,604 (+)NCBI
Lyon_Hypertensive861,316,386 - 61,317,766 (+)NCBI
F344_StmMcwi852,710,713 - 52,712,091 (+)NCBI
Rnor_6.0855,037,750 - 55,039,130 (+)NCBI
Rnor_5.0853,635,072 - 53,636,452 (+)NCBI
RGSC_v3.4853,964,693 - 53,966,073 (+)RGD
Celera850,502,770 - 50,504,150 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_071986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF13229 (Get FASTA)   NCBI Sequence Viewer  
  EDL95464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013188.2
GenBank Protein P62078 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071986   ⟸   NM_022541
- UniProtKB: P62078 (UniProtKB/Swiss-Prot),   A6J4E1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013188   ⟸   ENSRNOT00000013188
Ensembl Acc Id: ENSRNOP00000090345   ⟸   ENSRNOT00000105971
Protein Domains
Tim10-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62078-F1-model_v2 AlphaFold P62078 1-83 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695949
Promoter ID:EPDNEW_R6472
Type:multiple initiation site
Name:Timm8b_1
Description:translocase of inner mitochondrial membrane 8 homolog B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0855,037,748 - 55,037,808EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619840 AgrOrtholog
BioCyc Gene G2FUF-30559 BioCyc
Ensembl Genes ENSRNOG00000009888 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013188.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.810 UniProtKB/Swiss-Prot
InterPro Tim10-like UniProtKB/Swiss-Prot
  Tim10-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:64372 UniProtKB/Swiss-Prot
NCBI Gene 64372 ENTREZGENE
Pfam zf-Tim10_DDP UniProtKB/Swiss-Prot
PhenoGen Timm8b PhenoGen
RatGTEx ENSRNOG00000009888 RatGTEx
Superfamily-SCOP SSF144122 UniProtKB/Swiss-Prot
UniProt A0A8I6ACB3_RAT UniProtKB/TrEMBL
  A6J4E1 ENTREZGENE, UniProtKB/TrEMBL
  P62078 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9QUT4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-29 Timm8b  translocase of inner mitochondrial membrane 8 homolog B  Timm8b  translocase of inner mitochondrial membrane 8 homolog b (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Timm8b  translocase of inner mitochondrial membrane 8 homolog b (yeast)  Ddp2  small zinc finger-like protein DDP2  Symbol and Name updated 1299863 APPROVED
2002-08-07 Ddp2  small zinc finger-like protein DDP2      Symbol and Name status set to provisional 70820 PROVISIONAL