Timm8b (translocase of inner mitochondrial membrane 8 homolog B) - Rat Genome Database

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Gene: Timm8b (translocase of inner mitochondrial membrane 8 homolog B) Chinchilla lanigera
Analyze
Symbol: Timm8b
Name: translocase of inner mitochondrial membrane 8 homolog B
RGD ID: 8799538
Description: PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial import inner membrane translocase subunit Tim8 B; translocase of inner mitochondrial membrane 8 homolog B (yeast)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,766,532 - 13,768,453 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,766,532 - 13,768,453 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Timm8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,766,532 - 13,768,453 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,766,532 - 13,768,453 (-)NCBIChiLan1.0ChiLan1.0
TIMM8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,084,800 - 112,086,756 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,084,800 - 112,086,798 (-)EnsemblGRCh38hg38GRCh38
GRCh3711111,955,524 - 111,957,480 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,461,079 - 111,462,669 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411111,461,081 - 111,462,669NCBI
Celera11109,108,716 - 109,110,714 (-)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,879,555 - 107,881,554 (-)NCBIHuRef
CHM1_111111,838,702 - 111,840,700 (-)NCBICHM1_1
T2T-CHM13v2.011112,095,054 - 112,097,010 (-)NCBIT2T-CHM13v2.0
Timm8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,515,227 - 50,516,620 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,515,210 - 50,516,620 (+)EnsemblGRCm39 Ensembl
GRCm38950,603,901 - 50,605,320 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,603,910 - 50,605,320 (+)EnsemblGRCm38mm10GRCm38
MGSCv37950,412,006 - 50,413,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36950,356,140 - 50,357,548 (+)NCBIMGSCv36mm8
Celera947,899,130 - 47,900,549 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
Timm8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,850,737 - 59,852,117 (+)NCBIGRCr8
mRatBN7.2850,954,350 - 50,955,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl850,954,342 - 50,955,729 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx856,460,042 - 56,461,420 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,738,940 - 54,740,318 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,603,216 - 52,604,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0855,037,750 - 55,039,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,037,750 - 55,039,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,635,072 - 53,636,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4853,964,693 - 53,966,073 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1853,983,759 - 53,985,125 (+)NCBI
Celera850,502,770 - 50,504,150 (+)NCBICelera
Cytogenetic Map8q23NCBI
TIMM8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,835,860 - 112,839,189 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,927,766 - 113,933,506 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,971,579 - 106,973,226 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,814,655 - 110,816,980 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,815,333 - 110,816,980 (-)Ensemblpanpan1.1panPan2
TIMM8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,041,139 - 21,042,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,040,715 - 21,042,769 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha520,963,682 - 20,965,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,064,553 - 21,066,182 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,064,129 - 21,066,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,126,167 - 21,127,794 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,026,177 - 21,027,806 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,074,828 - 21,076,458 (+)NCBIUU_Cfam_GSD_1.0
Timm8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,334,645 - 94,336,352 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366122,369,292 - 2,371,220 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366122,369,273 - 2,370,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMM8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,787,405 - 39,790,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,788,164 - 39,790,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,629,778 - 44,632,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMM8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,441,661 - 103,443,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1103,442,144 - 103,443,611 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604322,540,564 - 22,542,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timm8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,239,046 - 7,242,090 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247847,239,046 - 7,241,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018611   ⟹   ENSCLAP00000018430
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541213,766,532 - 13,768,453 (-)Ensembl
RefSeq Acc Id: XM_005378108   ⟹   XP_005378165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541213,766,532 - 13,768,453 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378165 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018430
  ENSCLAP00000018430.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378165   ⟸   XM_005378108
- UniProtKB: A0A8C2VT16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018430   ⟸   ENSCLAT00000018611
Protein Domains
Tim10-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012638 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018611 ENTREZGENE
  ENSCLAT00000018611.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.810 UniProtKB/TrEMBL
InterPro Tim10-like UniProtKB/TrEMBL
  Tim10-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Timm8b ENTREZGENE
Pfam zf-Tim10_DDP UniProtKB/TrEMBL
Superfamily-SCOP SSF144122 UniProtKB/TrEMBL
UniProt A0A8C2VT16 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Timm8b  translocase of inner mitochondrial membrane 8 homolog B    translocase of inner mitochondrial membrane 8 homolog B (yeast)  Symbol and/or name change 5135510 APPROVED