Hspa13 (heat shock protein family A (Hsp70) member 13) - Rat Genome Database

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Gene: Hspa13 (heat shock protein family A (Hsp70) member 13) Rattus norvegicus
Analyze
Symbol: Hspa13
Name: heat shock protein family A (Hsp70) member 13
RGD ID: 3775
Description: Predicted to enable ATP hydrolysis activity; heat shock protein binding activity; and protein folding chaperone. Predicted to be involved in protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in cytosol; nucleus; and plasma membrane. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heat shock 70 kDa protein 13; heat shock protein 13; heat shock protein 70 family, member 13; heat shock protein 70kDa family, member 13; microsomal stress 70 protein ATPase core; microsomal stress-70 protein ATPase core; Stch; stress 70 protein chaperone microsome-associated 60 kDa protein; stress 70 protein chaperone microsome-associated 60kD human homolog; stress 70 protein chaperone, microsome-associated; stress 70 protein chaperone, microsome-associated, 60kD human homolog; stress 70 protein chaperone, microsome-associated, human homolog; stress-70 protein chaperone microsome-associated 60 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,862,717 - 27,876,898 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1127,862,593 - 27,876,898 (-)EnsemblGRCr8
mRatBN7.21114,375,669 - 14,389,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,373,275 - 14,389,895 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1123,001,434 - 23,015,613 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,727,804 - 15,741,983 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01114,895,675 - 14,909,854 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,146,515 - 14,160,697 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,144,130 - 14,160,892 (-)Ensemblrn6Rnor6.0
Rnor_5.01117,802,649 - 17,816,830 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41114,521,734 - 14,535,915 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1114,388,645 - 14,402,826 (-)NCBICelera
RGSC_v3.11114,521,609 - 14,535,915 (-)NCBI
Cytogenetic Map11p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
1H-pyrazole  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Bisphenol Z  (ISO)
brequinar  (ISO)
buspirone  (EXP)
butyric acid  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
corosolic acid  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
D-glucose  (ISO)
DDE  (ISO)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
fenofibrate  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
gedunin  (ISO)
genistein  (ISO)
glafenine  (EXP)
glucose  (ISO)
glycidyl methacrylate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hypochlorous acid  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phlorizin  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. A 'core ATPase', Hsp70-like structure is conserved in human, rat, and C. elegans STCH proteins. Otterson GA and Kaye FJ, Gene 1997 Oct 15;199(1-2):287-92.
6. Stch encodes the 'ATPase core' of a microsomal stress 70 protein. Otterson GA, etal., EMBO J 1994 Mar 1;13(5):1216-25.
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:15489334   PMID:19199708  


Genomics

Comparative Map Data
Hspa13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,862,717 - 27,876,898 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1127,862,593 - 27,876,898 (-)EnsemblGRCr8
mRatBN7.21114,375,669 - 14,389,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,373,275 - 14,389,895 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1123,001,434 - 23,015,613 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,727,804 - 15,741,983 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01114,895,675 - 14,909,854 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,146,515 - 14,160,697 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,144,130 - 14,160,892 (-)Ensemblrn6Rnor6.0
Rnor_5.01117,802,649 - 17,816,830 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41114,521,734 - 14,535,915 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1114,388,645 - 14,402,826 (-)NCBICelera
RGSC_v3.11114,521,609 - 14,535,915 (-)NCBI
Cytogenetic Map11p11NCBI
HSPA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,371,115 - 14,383,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,371,115 - 14,383,484 (-)Ensemblhg38GRCh38
GRCh372115,743,436 - 15,755,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362114,665,307 - 14,677,380 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342114,665,309 - 14,677,380NCBI
Celera21900,677 - 912,750 (-)NCBICelera
Cytogenetic Map21q11.2NCBI
HuRef211,113,800 - 1,125,871 (-)NCBIHuRef
CHM1_12115,303,921 - 15,315,993 (-)NCBICHM1_1
T2T-CHM13v2.02112,713,857 - 12,725,888 (-)NCBIT2T-CHM13v2.0
Hspa13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391675,552,078 - 75,564,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1675,542,319 - 75,563,992 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381675,755,190 - 75,767,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1675,745,431 - 75,767,104 (-)Ensemblmm10GRCm38
MGSCv371675,755,435 - 75,767,063 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361675,637,874 - 75,649,458 (-)NCBIMGSCv36mm8
Celera1675,974,819 - 75,986,466 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.36NCBI
Hspa13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,195,308 - 16,206,100 (-)Ensembl
ChiLan1.0NW_00495540716,195,366 - 16,205,371 (-)NCBIChiLan1.0ChiLan1.0
HSPA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22210,852,296 - 10,864,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1215,686,034 - 5,698,158 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0211,101,715 - 1,113,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12114,468,887 - 14,480,986 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2114,468,887 - 14,480,986 (-)EnsemblpanPan2panpan1.1
HSPA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,365,374 - 11,377,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,367,788 - 11,377,828 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3111,376,570 - 11,389,273 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03111,390,307 - 11,403,009 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3111,389,844 - 11,402,716 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13111,363,132 - 11,375,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,400,638 - 11,413,475 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03111,797,157 - 11,809,886 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hspa13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,476,191 - 12,486,942 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,394,075 - 7,406,692 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,395,962 - 7,406,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,310,727 - 179,321,491 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113179,309,746 - 179,321,297 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213189,549,394 - 189,560,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,136,291 - 78,148,457 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,136,170 - 78,148,991 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605075,771,695 - 75,783,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247452,840,513 - 2,852,255 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247452,841,736 - 2,851,844 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hspa13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1466,217,686 - 66,231,842 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hspa13
218 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:50
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000047320
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH142228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21114,375,679 - 14,375,856 (+)MAPPERmRatBN7.2
Rnor_6.01114,146,526 - 14,146,702NCBIRnor6.0
Rnor_5.01117,802,660 - 17,802,836UniSTSRnor5.0
RGSC_v3.41114,521,745 - 14,521,921UniSTSRGSC3.4
Celera1114,388,656 - 14,388,832UniSTS
Cytogenetic Map11p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 354 192 11 144 79 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000081096   ⟹   ENSRNOP00000070174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1127,863,817 - 27,876,898 (-)Ensembl
mRatBN7.2 Ensembl1114,376,769 - 14,389,895 (-)Ensembl
Rnor_6.0 Ensembl1114,146,521 - 14,160,697 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091864   ⟹   ENSRNOP00000071352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1114,144,130 - 14,160,892 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102472   ⟹   ENSRNOP00000096623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1127,862,593 - 27,875,780 (-)Ensembl
mRatBN7.2 Ensembl1114,373,275 - 14,388,733 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109029   ⟹   ENSRNOP00000095281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1127,862,593 - 27,876,898 (-)Ensembl
mRatBN7.2 Ensembl1114,373,275 - 14,389,893 (-)Ensembl
RefSeq Acc Id: NM_019271   ⟹   NP_062144
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81127,862,717 - 27,876,898 (-)NCBI
mRatBN7.21114,375,669 - 14,389,853 (-)NCBI
Rnor_6.01114,146,515 - 14,160,697 (-)NCBI
Rnor_5.01117,802,649 - 17,816,830 (-)NCBI
RGSC_v3.41114,521,734 - 14,535,915 (-)RGD
Celera1114,388,645 - 14,402,826 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062144 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB88258 (Get FASTA)   NCBI Sequence Viewer  
  AAH70954 (Get FASTA)   NCBI Sequence Viewer  
  EDM10581 (Get FASTA)   NCBI Sequence Viewer  
  EDM10582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095281
  ENSRNOP00000095281.1
GenBank Protein O35162 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062144   ⟸   NM_019271
- Peptide Label: precursor
- UniProtKB: Q6IRE1 (UniProtKB/Swiss-Prot),   O35162 (UniProtKB/Swiss-Prot),   A6JL16 (UniProtKB/TrEMBL),   A0A8I6GM59 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070174   ⟸   ENSRNOT00000081096
Ensembl Acc Id: ENSRNOP00000071352   ⟸   ENSRNOT00000091864
Ensembl Acc Id: ENSRNOP00000096623   ⟸   ENSRNOT00000102472
Ensembl Acc Id: ENSRNOP00000095281   ⟸   ENSRNOT00000109029

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35162-F1-model_v2 AlphaFold O35162 1-471 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698004
Promoter ID:EPDNEW_R8529
Type:multiple initiation site
Name:Hspa13_1
Description:heat shock protein family A member 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,160,720 - 14,160,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3775 AgrOrtholog
BioCyc Gene G2FUF-22230 BioCyc
Ensembl Genes ENSRNOG00000060979 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000109029 ENTREZGENE
  ENSRNOT00000109029.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.420.40 UniProtKB/Swiss-Prot
  Actin, Chain A, domain 4 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7103134 IMAGE-MGC_LOAD
InterPro ATPase_NBD UniProtKB/Swiss-Prot
  Heat_shock_70_CS UniProtKB/Swiss-Prot
  Hsp_70_fam UniProtKB/Swiss-Prot
  HSPA13 UniProtKB/Swiss-Prot
KEGG Report rno:29734 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91712 IMAGE-MGC_LOAD
NCBI Gene 29734 ENTREZGENE
PANTHER PTHR19375 UniProtKB/Swiss-Prot
Pfam HSP70 UniProtKB/Swiss-Prot
PhenoGen Hspa13 PhenoGen
PRINTS HEATSHOCK70 UniProtKB/Swiss-Prot
PROSITE HSP70_1 UniProtKB/Swiss-Prot
  HSP70_2 UniProtKB/Swiss-Prot
  HSP70_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060979 RatGTEx
Superfamily-SCOP SSF53067 UniProtKB/Swiss-Prot
TIGR TC230358
UniProt A0A8I6GM59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R215_RAT UniProtKB/TrEMBL
  A6JL16 ENTREZGENE, UniProtKB/TrEMBL
  HSP13_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6IRE1 ENTREZGENE
UniProt Secondary Q6IRE1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-05 Hspa13  heat shock protein family A (Hsp70) member 13  Hspa13  heat shock protein 70 family, member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-06-04 Hspa13  heat shock protein 70 family, member 13  Hspa13  heat shock protein 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-29 Hspa13  heat shock protein 13  Hspa13  heat shock protein 70 family, member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Hspa13  heat shock protein 70 family, member 13  Hspa13  heat shock protein 70kDa family, member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-20 Hspa13  heat shock protein 70kDa family, member 13  Stch  stress 70 protein chaperone, microsome-associated, human homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Stch  stress 70 protein chaperone, microsome-associated, human homolog  Stch  stress 70 protein chaperone, microsome-associated  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Stch  stress 70 protein chaperone, microsome-associated  Stch  stress 70 protein chaperone, microsome-associated, 60kD human homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Stch  stress 70 protein chaperone, microsome-associated, 60kD human homolog       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains novel microsome-associated protein member of the stress70 protein chaperone family 634153
gene_process brings about cellular responses to protein processing requirements 634153
gene_protein protein has a membrane-bound microsome fraction 634153