Rpl39 (ribosomal protein L39) - Rat Genome Database

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Gene: Rpl39 (ribosomal protein L39) Rattus norvegicus
Analyze
Symbol: Rpl39
Name: ribosomal protein L39
RGD ID: 3593
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in antimicrobial humoral immune response mediated by antimicrobial peptide; cytoplasmic translation; and innate immune response in mucosa. Part of cytosolic large ribosomal subunit. Orthologous to human RPL39 (ribosomal protein L39); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L39; large ribosomal subunit protein eL39
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl31-ps12   Rpl39-ps1   Rpl39-ps10   Rpl39-ps11   Rpl39-ps12   Rpl39-ps13   Rpl39-ps14  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,192,901 - 121,195,896 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1522,598,695 - 22,598,850 (-)EnsemblGRCr8
GRCr8 Ensembl731,721,884 - 31,722,039 (+)EnsemblGRCr8
GRCr8 EnsemblX121,192,779 - 121,195,879 (-)EnsemblGRCr8
mRatBN7.2X116,327,216 - 116,330,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,118,923 - 20,119,078 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl729,834,988 - 29,835,143 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl186,326,330 - 6,326,692 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX31,984,332 - 31,984,487 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2017,253,931 - 17,254,086 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX118,430,743 - 118,433,782 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X121,999,885 - 122,002,924 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X119,545,777 - 119,548,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X123,705,241 - 123,707,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)Ensemblrn6Rnor6.0
Rnor_5.0X123,841,669 - 123,843,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X7,825,919 - 7,827,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX115,554,572 - 115,556,588 (-)NCBICelera
RGSC_v3.1X7,830,555 - 7,833,491 (+)NCBI
Cytogenetic MapXq35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, etal., Genome Res 1996 Sep;6(9):791-806.
3. The primary structures of rat ribosomal proteins: the characterization of the cDNAs for S21 and L39, corrections in the sequences of L7 and L18a, and the identification of L33. Chan YL, etal., Biochem Biophys Res Commun 1995 Aug 24;213(3):1042-50.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins L4, L5, L7, L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37, and L39. Tsurugi K, etal., J Biol Chem. 1976 Dec 25;251(24):7940-6.
Additional References at PubMed
PMID:6706949   PMID:12860195   PMID:12962325   PMID:15489334   PMID:17154719   PMID:25957688  


Genomics

Comparative Map Data
Rpl39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,192,901 - 121,195,896 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1522,598,695 - 22,598,850 (-)EnsemblGRCr8
GRCr8 Ensembl731,721,884 - 31,722,039 (+)EnsemblGRCr8
GRCr8 EnsemblX121,192,779 - 121,195,879 (-)EnsemblGRCr8
mRatBN7.2X116,327,216 - 116,330,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,118,923 - 20,119,078 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl729,834,988 - 29,835,143 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl186,326,330 - 6,326,692 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX31,984,332 - 31,984,487 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2017,253,931 - 17,254,086 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX118,430,743 - 118,433,782 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X121,999,885 - 122,002,924 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X119,545,777 - 119,548,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X123,705,241 - 123,707,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)Ensemblrn6Rnor6.0
Rnor_5.0X123,841,669 - 123,843,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X7,825,919 - 7,827,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX115,554,572 - 115,556,588 (-)NCBICelera
RGSC_v3.1X7,830,555 - 7,833,491 (+)NCBI
Cytogenetic MapXq35NCBI
RPL39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,786,504 - 119,791,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,786,497 - 119,791,662 (-)Ensemblhg38GRCh38
GRCh37X118,920,467 - 118,925,593 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,804,497 - 118,809,634 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X118,702,350 - 118,707,488NCBI
CeleraX119,375,089 - 119,380,226 (-)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX108,414,000 - 108,419,138 (-)NCBIHuRef
CHM1_1X118,831,549 - 118,836,703 (-)NCBICHM1_1
T2T-CHM13v2.0X118,161,629 - 118,166,754 (-)NCBIT2T-CHM13v2.0
Rpl39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,346,169 - 36,348,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,346,173 - 36,349,055 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X37,082,518 - 37,085,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,082,520 - 37,085,402 (-)Ensemblmm10GRCm38
MGSCv37X34,622,515 - 34,625,179 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X33,513,965 - 33,516,629 (-)NCBIMGSCv36mm8
CeleraX23,806,150 - 23,808,814 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.5NCBI
Rpl39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955534200,591 - 203,827 (+)NCBIChiLan1.0ChiLan1.0
RPL39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X119,167,811 - 119,173,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X119,171,415 - 119,176,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X108,818,773 - 108,823,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X119,243,623 - 119,248,916 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX119,243,624 - 119,248,916 (-)EnsemblpanPan2panpan1.1
LOC100687285
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,404,495 - 3,411,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,412,178 - 3,419,003 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0353,461,129 - 3,467,957 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1353,336,550 - 3,343,086 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,358,282 - 3,365,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,690,923 - 4,697,748 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X90,850,993 - 90,854,543 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647910,132,965 - 10,136,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX98,178,155 - 98,181,598 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X98,178,148 - 98,181,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X113,430,973 - 113,434,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606532,567,895 - 32,573,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248953,748,059 - 3,752,199 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl39
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X103,267,179 - 103,270,196 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl39
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:91
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000064521
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X105468858125434318Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
AI408836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,327,367 - 116,327,610 (+)MAPPERmRatBN7.2
Rnor_6.0X123,705,387 - 123,705,629NCBIRnor6.0
Rnor_5.0X123,841,815 - 123,842,057UniSTSRnor5.0
RGSC_v3.4X7,827,547 - 7,827,789UniSTSRGSC3.4
CeleraX115,554,718 - 115,554,960UniSTS
Cytogenetic MapXq12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 15 62 136 58 61 42 88 42 312 174 11 127 77 83 19 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046536   ⟹   ENSRNOP00000049665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2017,253,931 - 17,254,086 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000051137   ⟹   ENSRNOP00000041329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl731,721,884 - 31,722,039 (+)Ensembl
mRatBN7.2 Ensembl729,834,988 - 29,835,143 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000059010   ⟹   ENSRNOP00000055790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX31,984,332 - 31,984,487 (-)Ensembl
RefSeq Acc Id: NM_012875   ⟹   NP_037007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,192,901 - 121,195,896 (-)NCBI
mRatBN7.2X116,327,216 - 116,330,211 (-)NCBI
Rnor_6.0X123,705,241 - 123,707,257 (-)NCBI
Rnor_5.0X123,841,669 - 123,843,685 (-)NCBI
RGSC_v3.4X7,825,919 - 7,827,935 (+)RGD
CeleraX115,554,572 - 115,556,588 (-)RGD
Sequence:
RefSeq Acc Id: NP_037007   ⟸   NM_012875
- UniProtKB: P62893 (UniProtKB/Swiss-Prot),   A6JMH4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055790   ⟸   ENSRNOT00000059010
Ensembl Acc Id: ENSRNOP00000049665   ⟸   ENSRNOT00000046536
Ensembl Acc Id: ENSRNOP00000041329   ⟸   ENSRNOT00000051137

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62893-F1-model_v2 AlphaFold P62893 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3593 AgrOrtholog
BioCyc Gene G2FUF-1299 BioCyc
Ensembl Genes ENSRNOG00000029267 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000034237 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000043348 Ensembl, ENTREZGENE
  ENSRNOG00000048073 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000050393 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000067660 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000043244.3 UniProtKB/Swiss-Prot
  ENSRNOT00000046536.4 UniProtKB/Swiss-Prot
  ENSRNOT00000050345.2 UniProtKB/Swiss-Prot
  ENSRNOT00000051137.3 UniProtKB/Swiss-Prot
  ENSRNOT00000059010.2 UniProtKB/Swiss-Prot
  ENSRNOT00000137267 ENTREZGENE
Gene3D-CATH 1.10.1620.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887843 IMAGE-MGC_LOAD
InterPro Ribosomal_L39 UniProtKB/Swiss-Prot
  Ribosomal_L39_CS UniProtKB/Swiss-Prot
  Ribosomal_L39e_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:25347 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72904 IMAGE-MGC_LOAD
NCBI Gene 25347 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39 UniProtKB/Swiss-Prot
  RIBOSOMAL PROTEIN L39E UniProtKB/Swiss-Prot
Pfam Ribosomal_L39 UniProtKB/Swiss-Prot
PhenoGen Rpl39 PhenoGen
PROSITE RIBOSOMAL_L39E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000029267 RatGTEx
  ENSRNOG00000034237 RatGTEx
  ENSRNOG00000043348 RatGTEx
  ENSRNOG00000048073 RatGTEx
  ENSRNOG00000050393 RatGTEx
  ENSRNOG00000067660 RatGTEx
Superfamily-SCOP SSF48662 UniProtKB/Swiss-Prot
TIGR TC218127
UniProt A0A8L2RBV8_RAT UniProtKB/TrEMBL
  A6JMH4 ENTREZGENE, UniProtKB/TrEMBL
  A6JMH5_RAT UniProtKB/TrEMBL
  P62893 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P02404 UniProtKB/Swiss-Prot
  P39025 UniProtKB/Swiss-Prot
  Q9BYF2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl39  Ribosomal protein L39      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other 9 to 11 copies of the gene 633962
gene_protein 50 amino acids and a molecular weight of 6,271 633962