Cyct (cytochrome c, testis) - Rat Genome Database

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Gene: Cyct (cytochrome c, testis) Rattus norvegicus
Analyze
Symbol: Cyct
Name: cytochrome c, testis
RGD ID: 2452
Description: Predicted to enable electron transfer activity and heme binding activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen and mitochondrial electron transport, ubiquinol to cytochrome c. Predicted to act upstream of or within hydrogen peroxide metabolic process and positive regulation of intrinsic apoptotic signaling pathway. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Orthologous to human CYCTP (cytochrome c, testis, pseudogene); PARTICIPATES IN Alzheimer's disease pathway; amyotrophic lateral sclerosis pathway; apoptotic cell death pathway; INTERACTS WITH 17beta-estradiol; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CYCTA; Cytochrome C testis specific; Cytochrome C, testis specific; cytochrome c, testis-specific
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8381,697,333 - 81,704,401 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl381,697,333 - 81,700,514 (-)EnsemblGRCr8
mRatBN7.2361,290,090 - 61,297,158 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl360,913,562 - 61,297,158 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx364,650,427 - 64,657,497 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0373,234,083 - 73,241,153 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,001,205 - 71,008,282 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0363,204,779 - 63,211,847 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl362,818,502 - 63,211,845 (-)Ensemblrn6Rnor6.0
Rnor_5.0369,744,115 - 69,781,049 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,042,806 - 59,045,988 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera360,778,075 - 60,785,143 (-)NCBICelera
RGSC_v3.1358,939,177 - 58,942,360 (-)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Structure and expression of rodent genes encoding the testis-specific cytochrome c. Differences in gene structure and evolution between somatic and testicular variants. Virbasius JV and Scarpulla RC, J Biol Chem 1988 May 15;263(14):6791-6.
Additional References at PubMed
PMID:14680842   PMID:16757556   PMID:18614015  


Genomics

Comparative Map Data
Cyct
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8381,697,333 - 81,704,401 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl381,697,333 - 81,700,514 (-)EnsemblGRCr8
mRatBN7.2361,290,090 - 61,297,158 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl360,913,562 - 61,297,158 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx364,650,427 - 64,657,497 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0373,234,083 - 73,241,153 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,001,205 - 71,008,282 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0363,204,779 - 63,211,847 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl362,818,502 - 63,211,845 (-)Ensemblrn6Rnor6.0
Rnor_5.0369,744,115 - 69,781,049 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,042,806 - 59,045,988 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera360,778,075 - 60,785,143 (-)NCBICelera
RGSC_v3.1358,939,177 - 58,942,360 (-)NCBI
Cytogenetic Map3q24NCBI
CYCTP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,092,500 - 178,104,470 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,092,503 - 178,104,470 (-)Ensemblhg38GRCh38
GRCh372178,957,227 - 178,969,197 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362178,665,473 - 178,677,443 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2172,560,128 - 172,572,098 (-)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2170,827,693 - 170,839,687 (-)NCBIHuRef
CHM1_12178,963,338 - 178,975,307 (-)NCBICHM1_1
T2T-CHM13v2.02178,575,256 - 178,587,228 (-)NCBIT2T-CHM13v2.0
Cyct
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39276,184,286 - 76,190,797 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl276,184,286 - 76,190,794 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38276,353,942 - 76,360,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl276,353,942 - 76,360,450 (-)Ensemblmm10GRCm38
MGSCv37276,192,000 - 76,198,505 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36276,154,875 - 76,161,287 (-)NCBIMGSCv36mm8
Celera278,020,786 - 78,027,832 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.94NCBI

Variants

.
Variants in Cyct
23 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:683
Count of miRNA genes:235
Interacting mature miRNAs:305
Transcripts:ENSRNOT00000008301, ENSRNOT00000008371, ENSRNOT00000045862, ENSRNOT00000050355
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
AU047925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2862,837,571 - 62,837,827 (+)MAPPERmRatBN7.2
Rnor_6.0867,304,185 - 67,304,440NCBIRnor6.0
Rnor_5.0867,038,196 - 67,038,451UniSTSRnor5.0
Rnor_5.0369,754,081 - 69,754,336UniSTSRnor5.0
RGSC_v3.4866,497,088 - 66,497,343UniSTSRGSC3.4
Celera862,255,430 - 62,255,685UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map3q23UniSTS
ANP32C__4314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2361,291,940 - 61,292,660 (+)MAPPERmRatBN7.2
Rnor_6.0363,206,630 - 63,207,349NCBIRnor6.0
RGSC_v3.4359,044,656 - 59,045,375UniSTSRGSC3.4
Celera360,779,926 - 60,780,645UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 7 45 97 74 81 52 24 52 6 194 83 85 45 63 29

Sequence


Ensembl Acc Id: ENSRNOT00000008301   ⟹   ENSRNOP00000008300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl360,913,571 - 61,273,339 (-)Ensembl
Rnor_6.0 Ensembl362,818,502 - 63,188,028 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000008371   ⟹   ENSRNOP00000008371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,697,333 - 81,700,514 (-)Ensembl
mRatBN7.2 Ensembl361,290,090 - 61,297,158 (-)Ensembl
Rnor_6.0 Ensembl363,204,774 - 63,211,842 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000045862   ⟹   ENSRNOP00000048657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl360,913,562 - 61,179,487 (-)Ensembl
Rnor_6.0 Ensembl362,818,502 - 63,094,177 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000050355   ⟹   ENSRNOP00000051289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl360,913,562 - 61,297,156 (-)Ensembl
Rnor_6.0 Ensembl362,818,502 - 63,211,845 (-)Ensembl
RefSeq Acc Id: NM_012840   ⟹   NP_036972
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,697,333 - 81,704,401 (-)NCBI
mRatBN7.2361,290,090 - 61,297,158 (-)NCBI
Rnor_6.0363,204,779 - 63,211,847 (-)NCBI
Rnor_5.0369,744,115 - 69,781,049 (-)NCBI
RGSC_v3.4359,042,806 - 59,045,988 (-)RGD
Celera360,778,075 - 60,785,143 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_036972 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41016 (Get FASTA)   NCBI Sequence Viewer  
  EDL79223 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008371
  ENSRNOP00000008371.1
GenBank Protein P10715 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036972   ⟸   NM_012840
- UniProtKB: P10715 (UniProtKB/Swiss-Prot),   A6HMH2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048657   ⟸   ENSRNOT00000045862
Ensembl Acc Id: ENSRNOP00000008371   ⟸   ENSRNOT00000008371
Ensembl Acc Id: ENSRNOP00000008300   ⟸   ENSRNOT00000008301
Ensembl Acc Id: ENSRNOP00000051289   ⟸   ENSRNOT00000050355
Protein Domains
Cytochrome c

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P10715-F1-model_v2 AlphaFold P10715 1-105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692157
Promoter ID:EPDNEW_R2682
Type:initiation region
Name:Cyct_1
Description:cytochrome c, testis
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0363,211,776 - 63,211,836EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2452 AgrOrtholog
BioCyc Gene G2FUF-49283 BioCyc
Ensembl Genes ENSRNOG00000024457 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000077437 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000008371 ENTREZGENE
  ENSRNOT00000008371.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.760.10 UniProtKB/Swiss-Prot
InterPro Cyt_c-like_dom UniProtKB/Swiss-Prot
  Cyt_c-like_dom_sf UniProtKB/Swiss-Prot
  Cyt_c_1A/1B UniProtKB/Swiss-Prot
KEGG Report rno:25310 UniProtKB/Swiss-Prot
NCBI Gene 25310 ENTREZGENE
PANTHER PTHR11961 UniProtKB/Swiss-Prot
Pfam Cytochrom_C UniProtKB/Swiss-Prot
PhenoGen Cyct PhenoGen
PRINTS CYTCHRMECIAB UniProtKB/Swiss-Prot
PROSITE CYTC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000024457 RatGTEx
  ENSRNOG00000077437 RatGTEx
Superfamily-SCOP SSF46626 UniProtKB/Swiss-Prot
UniProt A0ABK0L533_RAT UniProtKB/TrEMBL
  A6HMH2 ENTREZGENE, UniProtKB/TrEMBL
  CYC2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Cyct  cytochrome c, testis    Cytochrome C, testis specific  Name updated 625702 APPROVED
2002-06-10 Cyct  Cytochrome C, testis specific      Symbol and Name status set to approved 70586 APPROVED