Bcl7b (BAF chromatin remodeling complex subunit BCL7B) - Rat Genome Database

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Gene: Bcl7b (BAF chromatin remodeling complex subunit BCL7B) Rattus norvegicus
Analyze
Symbol: Bcl7b
Name: BAF chromatin remodeling complex subunit BCL7B
RGD ID: 1597090
Description: Predicted to be part of SWI/SNF complex. Orthologous to human BCL7B (BAF chromatin remodeling complex subunit BCL7B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B-cell CLL/lymphoma 7 protein family member B; B-cell CLL/lymphoma 7B; BCL tumor suppressor 7B; BCL7B, BAF complex component; LOC368001; similar to B-cell CLL/lymphoma 7B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,133,412 - 27,146,631 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1227,133,412 - 27,146,636 (-)EnsemblGRCr8
mRatBN7.21221,496,860 - 21,510,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,496,856 - 21,510,202 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1222,638,494 - 22,651,869 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,250,819 - 23,264,194 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,317,282 - 22,330,657 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,543,748 - 24,557,093 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,543,759 - 24,556,976 (-)Ensemblrn6Rnor6.0
Rnor_5.01226,541,051 - 26,554,396 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41222,651,275 - 22,656,141 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1223,259,412 - 23,272,757 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
SWI/SNF complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Bcl7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,133,412 - 27,146,631 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1227,133,412 - 27,146,636 (-)EnsemblGRCr8
mRatBN7.21221,496,860 - 21,510,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,496,856 - 21,510,202 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1222,638,494 - 22,651,869 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,250,819 - 23,264,194 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,317,282 - 22,330,657 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,543,748 - 24,557,093 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,543,759 - 24,556,976 (-)Ensemblrn6Rnor6.0
Rnor_5.01226,541,051 - 26,554,396 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41222,651,275 - 22,656,141 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1223,259,412 - 23,272,757 (-)NCBICelera
Cytogenetic Map12q12NCBI
BCL7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,536,356 - 73,557,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,536,355 - 73,557,699 (-)Ensemblhg38GRCh38
GRCh37772,950,686 - 72,972,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,588,622 - 72,609,960 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34772,395,336 - 72,416,675NCBI
Celera768,428,601 - 68,449,940 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,832,300 - 68,853,680 (-)NCBIHuRef
CHM1_1773,096,104 - 73,117,479 (-)NCBICHM1_1
T2T-CHM13v2.0774,736,839 - 74,758,190 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,283,755 - 72,305,137 (-)NCBI
Bcl7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,197,226 - 135,210,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,197,137 - 135,210,709 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385135,168,372 - 135,181,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,168,283 - 135,181,855 (+)Ensemblmm10GRCm38
MGSCv375135,644,242 - 135,657,722 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365135,453,119 - 135,466,472 (+)NCBIMGSCv36mm8
Celera5132,179,566 - 132,193,046 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.04NCBI
Bcl7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,148,868 - 14,167,653 (+)Ensembl
ChiLan1.0NW_00495545614,149,484 - 14,166,753 (+)NCBIChiLan1.0ChiLan1.0
BCL7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2691,344,072 - 91,365,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17139,608,747 - 139,630,142 (+)NCBINHGRI_mPanPan1
PanPan1.1780,688,360 - 80,712,657 (-)NCBIPanPan1.1PanPan1.1panPan2
BCL7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,680,619 - 6,701,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,680,735 - 6,700,639 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha68,377,928 - 8,398,893 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.066,495,597 - 6,516,598 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,471,231 - 6,516,598 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,485,070 - 6,506,023 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,432,831 - 6,453,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,596,500 - 6,617,465 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bcl7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,214,623 - 131,242,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,799,571 - 2,821,956 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,793,098 - 2,821,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCL7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,850,354 - 10,869,288 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1310,850,347 - 10,887,485 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,550,010 - 10,587,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCL7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,498,053 - 9,527,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,498,161 - 9,526,542 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660706,952,624 - 6,978,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcl7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,223,384 - 14,240,671 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474014,223,391 - 14,237,897 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bcl7b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11618,838,979 - 18,853,205 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bcl7b
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:226
Count of miRNA genes:145
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000041798, ENSRNOT00000067945, ENSRNOT00000074083
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041798   ⟹   ENSRNOP00000046167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1227,133,412 - 27,146,631 (-)Ensembl
mRatBN7.2 Ensembl1221,496,856 - 21,510,202 (-)Ensembl
Rnor_6.0 Ensembl1224,543,759 - 24,556,976 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117047   ⟹   ENSRNOP00000097033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1227,133,412 - 27,146,631 (-)Ensembl
mRatBN7.2 Ensembl1221,496,856 - 21,510,202 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145435   ⟹   ENSRNOP00000102703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1227,141,855 - 27,146,636 (-)Ensembl
RefSeq Acc Id: NM_001420935   ⟹   NP_001407864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81227,133,412 - 27,146,631 (-)NCBI
mRatBN7.21221,496,860 - 21,510,079 (-)NCBI
Ensembl Acc Id: ENSRNOP00000046167   ⟸   ENSRNOT00000041798
Ensembl Acc Id: ENSRNOP00000097033   ⟸   ENSRNOT00000117047
RefSeq Acc Id: NP_001407864   ⟸   NM_001420935
- UniProtKB: A0A9K3Y829 (UniProtKB/TrEMBL),   B1H245 (UniProtKB/TrEMBL),   F1LP28 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102703   ⟸   ENSRNOT00000145435

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H245-F1-model_v2 AlphaFold B1H245 1-202 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698557
Promoter ID:EPDNEW_R9082
Type:initiation region
Name:Bcl7b_1
Description:BCL tumor suppressor 7B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,556,971 - 24,557,031EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597090 AgrOrtholog
BioCyc Gene G2FUF-19609 BioCyc
Ensembl Genes ENSRNOG00000032705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041798 ENTREZGENE
  ENSRNOT00000041798.6 UniProtKB/TrEMBL
  ENSRNOT00000117047.2 UniProtKB/TrEMBL
  ENSRNOT00000145435.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8365281 IMAGE-MGC_LOAD
InterPro BCL7 UniProtKB/TrEMBL
MGC_CLONE MGC:187610 IMAGE-MGC_LOAD
NCBI Gene 368001 ENTREZGENE
PANTHER B-CELL CLL/LYMPHOMA 7 PROTEIN FAMILY MEMBER B UniProtKB/TrEMBL
  PTHR12767 UniProtKB/TrEMBL
Pfam BCL_N UniProtKB/TrEMBL
PhenoGen Bcl7b PhenoGen
RatGTEx ENSRNOG00000032705 RatGTEx
UniProt A0A8I6ARW9_RAT UniProtKB/TrEMBL
  A0A9K3Y829 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNQ0_RAT UniProtKB/TrEMBL
  B1H245 ENTREZGENE, UniProtKB/TrEMBL
  F1LP28 ENTREZGENE
UniProt Secondary F1LP28 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Bcl7b  BAF chromatin remodeling complex subunit BCL7B  Bcl7b  BCL7B, BAF complex component  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-11-09 Bcl7b  BCL7B, BAF complex component  Bcl7b  BCL tumor suppressor 7B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-13 Bcl7b  BCL tumor suppressor 7B  Bcl7b  B-cell CLL/lymphoma 7B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Bcl7b  B-cell CLL/lymphoma 7B  LOC368001  similar to B-cell CLL/lymphoma 7B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC368001  similar to B-cell CLL/lymphoma 7B      Symbol and Name status set to provisional 70820 PROVISIONAL