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Gene: Fcrl1 (Fc receptor-like 1) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Fcrl1

Name:

Fc receptor-like 1

RGD ID:

1589411

Description:

Predicted to act upstream of or within positive regulation of complement-dependent cytotoxicity and regulation of complement activation. Predicted to be located in cell surface and plasma membrane. Orthologous to human CD5L (CD5 molecule like); INTERACTS WITH bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fc receptor-like protein 1; LOC680665; rCG62545-like; similar to Fc receptor-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	CD5L (CD5 molecule like)	HGNC	EggNOG, Ensembl, PhylomeDB, Treefam
Homo sapiens (human):	FCRL1 (Fc receptor like 1)	HGNC	EggNOG, NCBI, OrthoDB, Treefam
Homo sapiens (human):	CD5 (CD5 molecule)	HGNC	Treefam
Homo sapiens (human):	FCRL2 (Fc receptor like 2)	HGNC	OrthoDB
Homo sapiens (human):	FCRL3 (Fc receptor like 3)	HGNC	OrthoDB
Homo sapiens (human):	DLGAP2 (DLG associated protein 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CD5L (CD5 molecule like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cd5l (CD5 antigen-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FCRL1 (Fc receptor like 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fcrl1 (Fc receptor-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC105945665	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	175,107,027 - 175,127,666 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	175,107,352 - 175,127,659 (+)	Ensembl				GRCr8
mRatBN7.2	2	172,809,442 - 172,829,780 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	172,790,934 - 172,829,753 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	179,959,556 - 179,979,915 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	177,981,885 - 178,002,244 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	172,571,135 - 172,591,439 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	186,702,311 - 186,724,205 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	186,555,632 - 186,724,205 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	206,111,324 - 206,129,923 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	179,416,663 - 179,425,297 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	166,761,926 - 166,782,291 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

bisphenol A (EXP)

Cuprizon (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

plasma membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15479727	PMID:16849395

Genomics

Variants

Variants in Fcrl1
170 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	121
Count of miRNA genes:	95
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000052347
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	171994826	205135428	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	178247591	Rat
61473	Bp19	Blood pressure QTL 19	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	178247591	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	154723085	178247591	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	178247591	Rat
7771605	Memor19	Memory QTL 19		0.00001	exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	2	172499769	175588177	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
7771603	Bp371	Blood pressure QTL 371		0.00001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172499769	175588177	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	178247591	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	178247591	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	178247591	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Markers in Region

RH138489

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	172,810,403 - 172,810,571 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	186,704,538 - 186,704,705	NCBI	Rnor6.0
Rnor_5.0	2	206,112,323 - 206,112,490	UniSTS	Rnor5.0
Celera	2	166,764,152 - 166,764,319	UniSTS
RH 3.4 Map	2	1133.4	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	6	18	108	74	75	44	92	44	6	227	140	11	83	29	41	31	7	7

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001402064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000052347 ⟹ ENSRNOP00000040520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	175,107,401 - 175,127,191 (+)	Ensembl
mRatBN7.2 Ensembl	2	172,809,491 - 172,829,285 (+)	Ensembl
Rnor_6.0 Ensembl	2	186,555,632 - 186,723,727 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000057022 ⟹ ENSRNOP00000053854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	172,790,934 - 172,802,017 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093342 ⟹ ENSRNOP00000076297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	175,107,352 - 175,127,659 (+)	Ensembl
mRatBN7.2 Ensembl	2	172,809,442 - 172,829,753 (+)	Ensembl
Rnor_6.0 Ensembl	2	186,703,541 - 186,724,205 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097157 ⟹ ENSRNOP00000083904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	172,796,522 - 172,799,733 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101089 ⟹ ENSRNOP00000077566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	172,809,442 - 172,829,477 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107487 ⟹ ENSRNOP00000091244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	172,790,996 - 172,807,737 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110129 ⟹ ENSRNOP00000097146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	175,107,358 - 175,127,659 (+)	Ensembl
mRatBN7.2 Ensembl	2	172,809,423 - 172,829,753 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111201 ⟹ ENSRNOP00000094941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	172,790,934 - 172,829,753 (+)	Ensembl

RefSeq Acc Id:

NM_001402064 ⟹ NP_001388993

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	175,107,352 - 175,127,666 (+)	NCBI
mRatBN7.2	2	172,809,442 - 172,829,760 (+)	NCBI

RefSeq Acc Id:

XM_006232674 ⟹ XP_006232736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	175,107,027 - 175,127,666 (+)	NCBI
mRatBN7.2	2	172,809,460 - 172,829,780 (+)	NCBI
Rnor_6.0	2	186,702,311 - 186,724,205 (+)	NCBI

Sequence:

show sequence

CTCAGAGAAGGGGAAGCCCCCTTGGGTACCATTCTACTCTGAGATATCTAGTCCCAACAAGACT
AAGCATCTGTCCCACTGAGGTCCAACCAGGCAGTCCAACTAGTGAAAGGGGACCCAACGGCAGG
CAACAGAGTCAGAGACGGCATCCGCTCCACTTGATAGGGGACCCACATGAAGATCAAGCTGCAC
ATCTACTACAAATGTGTGGGAAGCCTAGGTTCAGCCCTGCACGCTCTCTGGTTGGTGGTTCAGT
CTCTGTGAGCCCCCGTGGGCCCAGGTTAGTTGACTTTGTGTCTCTCCAGCCCTTTGTCCTGCCT
GGTTATCTTAGGTGATAAAATATTCAAGAAACGTGAAAAATAAGATCGTTTATTCCCCCTTAAT
CTGTAATGAGGATCTGTTTTGGGTGACAGAGAAAGGAAGACACAGATGCTAAAGAAAGCAATGG
CAGGAATTGCCTATCCCCTGACTGGGTAAGGGGAGGAAAGGGATCGCACAAATACCAGAGTTAG
CGATGATGGTGAGCATTTTCCAGTTCACGGAGGCTAATCGGTGCATACTCAGGTCCTCCACTTT
ATTCCAAATCTCTCCCACTTTATGATTTCCTATGACTTTTTAAAAAAGTGGATCATGTTTATTT
TTTGGGACACTGAAATTTTAAACATGGGAAAATACCTATATAAATATCTGAACCCTATATAAAA
TCAGAATACAAACAACAGCAAAAAAGAGCATAACCTGCGAATACTCCCTTCCATCCCTGAATCA
GACAGAGACTGTAGTAGAAGCTTGGGAGAAAGAAGGTGTATTTGATCTGACGCTTAAATAGACA
TCCTTACCAAAGATGGCAATGTGTGGTGTGAAATTTGGCAAGACTCAAGCTCAGTGAGACTTGT
CAAAGCCCGAATCATCAACTGGAAACCCCTGAGATACATGAATATTAATATTTTAATACATAAA
GTATTAATCGAAGTTATAAAAAAGGAAGCCTGCATCTCCTGATGCACAGAAGCTCCAAGTTATG
AAATTTAATCAAACCACAGGAAAGAGCACCTTTCTTTTGGGGGCCTTCATGGAGGAAGAAATGA
ACACTGGCCAATGTTCCTTTGAACTTCTATTTCTGTAACTCGTGCTGAAGGTTAGCTTCTGACC
CCAACTTCCTCAAACCTCAGAGAAGTTCAGAGCAGTCATCTGTGACACCTCTGTGAGTAGTCTG
GTTTTGCTTTTTTTTTCTTTTGGTGAGCGGCACCTTCAAGTTACCATCCCCAGCCTAGTCCTCA
TGCTACCTTGGTTCCTGCTGTTGATCTGTGGAAACCCTGTCTCTGATGTGAGCTTGAAGACCAA
GCCCCCGGGGGAATGGGTTATGGAGGGAAACAAGCTGGTCCTCATCTGCTCCGTTGCTAACACC
ACTGAAAATATAACTTACCTCTGGTACAGAGGGGCCCTGGGTTTAAATCTGGAAAAGAAGACAC
TGCCTTCAATAACAGCAGAGTTTGAGATCAGTGAAGTGAAGCAAAGCGATGTTGATCAATATTA
CTGTGCAGCTGACAACGGCCATGGCCCTGTTCTCAGTGAGCTGGTGAACATCAATGTCAGAGTT
CCAGTGTCTCGCCCTGTCCTTACATTTGTGGACACTGGAACCCAGGCTGTGCTGGGGGACCTGG
TGGAGCTTCACTGTAAGGCCTTGAGAGGCTCACCCCCAATCTTCTACCAGTTTTATCATGAGAA
CATCATTCTGGGGAACAGTTCAGACCACTCTGGAGGAGGAGCATCCTTCAACTTCTCCCTGACC
GCAGAACATTCTGGAAACTTCTCCTGTGAAGCCAGCAATGGCCAGGGTGTCCAACGAAGTGAAG
TGGTGGCTCTCAACTTAACAGGTCTCTCCTTAGTGCCCACTGTGAATGGAATCGGCAACCTCTC
CTCAGGACTCACTGGCTGGCTGATTGGCTGTCTTGGCCCCATCGCCACGGTCCTAATATTTTGC
TACTGGCTCAAGAGAAAAATAGGAAGACAATCGGATGATCCACTCAGGAGCCCTCCTCAGACTG
TGCTCCAAGAATCCAACTACCACAACTCCCCGGACCCAGGGCATCCAGAACCCGTGTATGAGAA
TGTGAATGCTGTAAGTGGCGATGAAGTTTACTCTCTGGTGTACCACACCCAGCAGGAGCTAGGA
CCGACAGCCGCTCAGCATGTGAGCACACACGGGGCAAGTGAGCTCTCCTCCGGAATCTATTCTA
AGCCGAGGATAAACATCGTTTATGTGGACTATGAAGACACCATGTAGAATTATGTAAACAGCAA
TGAGGAGTGCTACAAACAAGCCCAAGGTCTGATGTGGCCTCCGAGGACACTGGAGACAGGAGTA
GCTTGCAAAGACACCTTTCCCACGTGCTGCTGTTCATTAGACGGGTCCTTCACCTACCCAGTGT
CAAGCCAGAACAAGTCCTACAGAAACCACCCAGGAAAACCAACTTAGATGGAGAAGCTGGAGCA
TTTGCTGGTGACATCTGGTTGTTGTCCATTCATGTTGGGGCATGATGAATTACACACAAACTTT
TATTTATAAGAAGAAAACGGTGTGATGAAAGCAAGTGAAGTCTTGGAGCAGGGGACAACTGAAA
CTCAGAGAGCACAAAACCAATGGCTTTGCCGGTCTGCTGTGGAGAGAGCTATGCTTTCTCTGTG
CACACATCCTAAAATACCCAACAGTGTACTTTTGAGTGTCATCAATTTGGAATTAAAACACAAT
TGCATAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001388993	(Get FASTA)	NCBI Sequence Viewer
	XP_006232736	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00784	(Get FASTA)	NCBI Sequence Viewer
	EDM00785	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040520.6
	ENSRNOP00000076297
	ENSRNOP00000076297.1
	ENSRNOP00000097146.2

RefSeq Acc Id:	XP_006232736 ⟸ XM_006232674
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AS51 (UniProtKB/TrEMBL), F1M8T7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPWFLLLICGNPVSDVSLKTKPPGEWVMEGNKLVLICSVANTTENITYLWYRGALGLNLEKKT LPSITAEFEISEVKQSDVDQYYCAADNGHGPVLSELVNINVRVPVSRPVLTFVDTGTQAVLGDL VELHCKALRGSPPIFYQFYHENIILGNSSDHSGGGASFNFSLTAEHSGNFSCEASNGQGVQRSE VVALNLTGLSLVPTVNGIGNLSSGLTGWLIGCLGPIATVLIFCYWLKRKIGRQSDDPLRSPPQT VLQESNYHNSPDPGHPEPVYENVNAVSGDEVYSLVYHTQQELGPTAAQHVSTHGASELSSGIYS KPRINIVYVDYEDTM hide sequence

Ensembl Acc Id:

ENSRNOP00000076297 ⟸ ENSRNOT00000093342

Ensembl Acc Id:

ENSRNOP00000040520 ⟸ ENSRNOT00000052347

Ensembl Acc Id:

ENSRNOP00000053854 ⟸ ENSRNOT00000057022

Ensembl Acc Id:

ENSRNOP00000094941 ⟸ ENSRNOT00000111201

Ensembl Acc Id:

ENSRNOP00000083904 ⟸ ENSRNOT00000097157

Ensembl Acc Id:

ENSRNOP00000077566 ⟸ ENSRNOT00000101089

Ensembl Acc Id:

ENSRNOP00000091244 ⟸ ENSRNOT00000107487

Ensembl Acc Id:

ENSRNOP00000097146 ⟸ ENSRNOT00000110129

RefSeq Acc Id:	NP_001388993 ⟸ NM_001402064
- Peptide Label:	precursor
- UniProtKB:	F1M8T7 (UniProtKB/TrEMBL), A0A1W2Q6J8 (UniProtKB/TrEMBL), A6J605 (UniProtKB/TrEMBL)

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8T7-F1-model_v2	AlphaFold	F1M8T7	1-343	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691416

Promoter ID:

EPDNEW_R1940

Type:

single initiation site

Name:

Fcrl1_1

Description:

Fc receptor-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	186,703,549 - 186,703,609	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589411	AgrOrtholog
BioCyc Gene	G2FUF-52552	BioCyc
Ensembl Genes	ENSRNOG00000034230	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000052347.7	UniProtKB/TrEMBL
	ENSRNOT00000093342	ENTREZGENE
	ENSRNOT00000093342.3	UniProtKB/TrEMBL
	ENSRNOT00000110129.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
NCBI Gene	680665	ENTREZGENE
PANTHER	B-CELL RECEPTOR CD22-RELATED	UniProtKB/TrEMBL
	VASCULAR CELL ADHESION MOLECULE 1	UniProtKB/TrEMBL
Pfam	Ig_2	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
PhenoGen	Fcrl1	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000034230	RatGTEx
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A1W2Q6J8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS51	ENTREZGENE, UniProtKB/TrEMBL
	A6J605	ENTREZGENE, UniProtKB/TrEMBL
	F1M8T7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Fcrl1	Fc receptor-like 1	LOC100365577	rCG62545-like	Data merged from RGD:2318805	1643240	APPROVED
2010-05-05	LOC100365577	rCG62545-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Fcrl1	Fc receptor-like 1	LOC680665	similar to Fc receptor-like protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680665	similar to Fc receptor-like protein 1	LOC686253	similar to Fc receptor-like protein 1	Data merged from RGD:1584311	1643240	APPROVED
2006-11-19	LOC680665	similar to Fc receptor-like protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC686253	similar to Fc receptor-like protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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