C5h9orf152 (similar to human chromosome 9 open reading frame 152) - Rat Genome Database

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Gene: C5h9orf152 (similar to human chromosome 9 open reading frame 152) Rattus norvegicus
Analyze
Symbol: C5h9orf152
Name: similar to human chromosome 9 open reading frame 152
RGD ID: 1589037
Description: Orthologous to human C9orf152 (chromosome 9 open reading frame 152); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); 17beta-hydroxy-5alpha-androstan-3-one (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC685849; LOC685849; uncharacterized protein C9orf152 homolog; uncharacterized protein LOC685849
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,455,701 - 77,463,069 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,455,710 - 77,463,069 (-)EnsemblGRCr8
mRatBN7.2572,660,573 - 72,667,941 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,660,573 - 72,668,379 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx574,551,983 - 74,559,335 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,373,608 - 76,380,956 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,345,736 - 76,353,084 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0574,997,426 - 75,005,688 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,997,843 - 75,005,567 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,152,231 - 79,159,857 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4575,872,796 - 75,877,741 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,507,987 - 71,516,082 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C5h9orf152
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,455,701 - 77,463,069 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,455,710 - 77,463,069 (-)EnsemblGRCr8
mRatBN7.2572,660,573 - 72,667,941 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,660,573 - 72,668,379 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx574,551,983 - 74,559,335 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,373,608 - 76,380,956 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,345,736 - 76,353,084 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0574,997,426 - 75,005,688 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,997,843 - 75,005,567 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,152,231 - 79,159,857 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4575,872,796 - 75,877,741 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,507,987 - 71,516,082 (-)NCBICelera
Cytogenetic Map5q24NCBI
C9orf152
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389110,199,561 - 110,208,159 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9110,190,048 - 110,208,159 (-)Ensemblhg38GRCh38
GRCh379112,961,841 - 112,970,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369112,001,662 - 112,009,735 (-)NCBIBuild 36Build 36hg18NCBI36
Celera983,463,470 - 83,472,042 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef982,563,921 - 82,572,493 (-)NCBIHuRef
CHM1_19113,108,293 - 113,116,865 (-)NCBICHM1_1
T2T-CHM13v2.09122,369,091 - 122,377,694 (-)NCBIT2T-CHM13v2.0
D630039A03Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39457,908,384 - 57,916,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl457,908,483 - 57,916,297 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38457,908,384 - 57,916,264 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl457,908,483 - 57,916,297 (-)Ensemblmm10GRCm38
MGSCv37457,921,256 - 57,929,136 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36458,002,438 - 58,010,318 (-)NCBIMGSCv36mm8
Celera457,820,859 - 57,828,865 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.87NCBI
CUNH9orf152
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541916,911,014 - 16,918,527 (+)Ensembl
ChiLan1.0NW_00495541916,910,030 - 16,917,851 (+)NCBIChiLan1.0ChiLan1.0
C11H9orf152
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21129,198,410 - 29,206,955 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1929,200,775 - 29,209,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0981,355,007 - 81,363,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19109,521,139 - 109,529,654 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9109,521,146 - 109,529,654 (-)EnsemblpanPan2panpan1.1
C11H9orf152
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11165,191,388 - 65,194,807 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1165,190,345 - 65,194,995 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1163,584,506 - 63,596,120 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01166,311,252 - 66,322,989 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,319,138 - 66,323,112 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,830,976 - 64,842,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,852,505 - 64,864,245 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,543,052 - 65,554,654 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH9orf152
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947180,418,479 - 180,422,641 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365592,843,974 - 2,846,955 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365592,843,980 - 2,847,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H9orf152
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,210,987 - 251,218,124 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,210,981 - 251,218,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21281,973,721 - 281,980,876 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C12H9orf152
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11229,338,902 - 29,347,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1229,338,323 - 29,347,014 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603513,418,245 - 13,427,746 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH9orf152
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247581,382,023 - 1,386,728 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247581,379,750 - 1,387,684 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
C1H9orf152
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1193,666,149 - 93,671,268 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C5h9orf152
20 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:65
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000016068
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 42 114 80 79 48 29 48 6 249 97 3 97 81 81 31 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000016068   ⟹   ENSRNOP00000016068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl577,455,710 - 77,463,069 (-)Ensembl
mRatBN7.2 Ensembl572,660,573 - 72,668,379 (-)Ensembl
Rnor_6.0 Ensembl574,997,843 - 75,005,567 (-)Ensembl
RefSeq Acc Id: NM_001400939   ⟹   NP_001387868
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8577,455,701 - 77,463,069 (-)NCBI
mRatBN7.2572,660,573 - 72,667,941 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387868 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91665 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016068
  ENSRNOP00000016068.4
Ensembl Acc Id: ENSRNOP00000016068   ⟸   ENSRNOT00000016068
RefSeq Acc Id: NP_001387868   ⟸   NM_001400939
- UniProtKB: D4A4N9 (UniProtKB/TrEMBL),   A6KDU0 (UniProtKB/TrEMBL)
Protein Domains
TBC1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4N9-F1-model_v2 AlphaFold D4A4N9 1-234 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693769
Promoter ID:EPDNEW_R4287
Type:single initiation site
Name:LOC685849_1
Description:hypothetical protein LOC685849
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0575,005,625 - 75,005,685EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589037 AgrOrtholog
BioCyc Gene G2FUF-41195 BioCyc
Ensembl Genes ENSRNOG00000012068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016068 ENTREZGENE
  ENSRNOT00000016068.7 UniProtKB/TrEMBL
InterPro Tbc1d30_C UniProtKB/TrEMBL
NCBI Gene 685849 ENTREZGENE
PANTHER RIKEN CDNA D630039A03 GENE UniProtKB/TrEMBL
  RIKEN CDNA D630039A03 GENE UniProtKB/TrEMBL
Pfam DUF4682 UniProtKB/TrEMBL
PhenoGen C5h9orf152 PhenoGen
RatGTEx ENSRNOG00000012068 RatGTEx
UniProt A6KDU0 ENTREZGENE, UniProtKB/TrEMBL
  D4A4N9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-28 C5h9orf152  similar to human chromosome 9 open reading frame 152  LOC685849  hypothetical protein LOC685849  Name and Symbol changed 629549 APPROVED
2013-05-24 LOC685849  hypothetical protein LOC685849  LOC100365807  hypothetical protein LOC100365807  Data merged from RGD:2318280 1643240 APPROVED
2010-05-05 LOC100365807  hypothetical protein LOC100365807      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685849  hypothetical protein LOC685849  LOC682188  hypothetical protein LOC682188  Data merged from RGD:1586902 1643240 APPROVED
2006-11-19 LOC685849  hypothetical protein LOC685849      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682188  hypothetical protein LOC682188      Symbol and Name status set to provisional 70820 PROVISIONAL