Svep1 (sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1) - Rat Genome Database

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Gene: Svep1 (sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1) Rattus norvegicus
Analyze
Symbol: Svep1
Name: sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
RGD ID: 1588987
Description: Predicted to enable chromatin binding activity and integrin binding activity involved in cell-matrix adhesion. Predicted to be involved in several processes, including lymph vessel morphogenesis; negative regulation of vasoconstriction; and positive regulation of platelet activation. Predicted to act upstream of or within several processes, including Tie signaling pathway; lymph circulation; and lymph vessel development. Predicted to be located in cytoplasm; extracellular space; and nucleus. Orthologous to human SVEP1 (sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103692362; LOC685899; similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1; Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1; uncharacterized LOC103692362
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,606,523 - 77,783,292 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,606,523 - 77,783,711 (-)EnsemblGRCr8
mRatBN7.2572,811,200 - 72,988,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,811,410 - 72,988,525 (-)EnsemblmRatBN7.2
Rnor_6.0575,147,245 - 75,320,873 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,143,867 - 75,319,765 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,300,847 - 79,471,213 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4576,025,177 - 76,203,391 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,650,775 - 71,826,999 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
Cuprizon  (EXP)
cytarabine  (ISO)
dexamethasone  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fenvalerate  (EXP)
folic acid  (ISO)
glycidol  (EXP)
hexadecanoic acid  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
linsidomine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
microcystin-LR  (EXP)
mifepristone  (EXP)
naled  (ISO)
ozone  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
extracellular matrix  (IEA)
extracellular region  (IEA,ISO,ISS)
extracellular space  (IEA,ISO)
membrane  (IEA)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822   PMID:15522233   PMID:17139625   PMID:20052625   PMID:24006456   PMID:27892606   PMID:28179430   PMID:28179432  


Genomics

Comparative Map Data
Svep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,606,523 - 77,783,292 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,606,523 - 77,783,711 (-)EnsemblGRCr8
mRatBN7.2572,811,200 - 72,988,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,811,410 - 72,988,525 (-)EnsemblmRatBN7.2
Rnor_6.0575,147,245 - 75,320,873 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,143,867 - 75,319,765 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,300,847 - 79,471,213 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4576,025,177 - 76,203,391 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,650,775 - 71,826,999 (-)NCBICelera
Cytogenetic Map5q24NCBI
SVEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389110,365,248 - 110,579,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9110,365,248 - 110,579,880 (-)Ensemblhg38GRCh38
GRCh379113,127,528 - 113,342,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369112,167,349 - 112,381,981 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349110,284,313 - 110,391,889NCBI
Celera983,629,159 - 83,843,852 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef982,729,176 - 82,943,867 (-)NCBIHuRef
CHM1_19113,273,970 - 113,488,566 (-)NCBICHM1_1
T2T-CHM13v2.09122,534,766 - 122,749,357 (-)NCBIT2T-CHM13v2.0
Svep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,042,796 - 58,206,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,042,442 - 58,206,859 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38458,042,796 - 58,206,596 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,042,442 - 58,206,859 (-)Ensemblmm10GRCm38
MGSCv37458,055,668 - 58,219,468 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36458,136,850 - 58,300,650 (-)NCBIMGSCv36mm8
Celera457,955,045 - 58,122,396 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.87NCBI
Svep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541916,589,811 - 16,777,001 (+)Ensembl
ChiLan1.0NW_00495541916,589,811 - 16,773,425 (+)NCBIChiLan1.0ChiLan1.0
SVEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21128,832,732 - 29,040,215 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1928,837,245 - 29,047,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0981,521,495 - 81,727,869 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19109,686,826 - 109,892,291 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9109,686,826 - 109,892,291 (-)EnsemblpanPan2panpan1.1
SVEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11165,312,723 - 65,494,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1165,289,087 - 65,637,974 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1163,715,062 - 63,896,447 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01166,442,286 - 66,624,302 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,442,407 - 66,624,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,961,708 - 65,143,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,983,267 - 65,165,351 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,673,793 - 65,855,474 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Svep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947180,539,650 - 180,710,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365592,556,207 - 2,726,635 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365592,556,207 - 2,726,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,368,845 - 251,571,415 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,367,401 - 251,571,799 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,115,121 - 282,317,808 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SVEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11228,806,583 - 29,183,167 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1228,959,222 - 29,181,871 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603513,582,942 - 13,811,101 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Svep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624758946,999 - 1,188,933 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624758946,334 - 1,188,976 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Svep1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1193,349,056 - 93,517,533 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Svep1
1101 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:39
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000047200
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
D5Uwm60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2572,943,400 - 72,943,679 (+)MAPPERmRatBN7.2
Rnor_6.0575,274,409 - 75,274,687NCBIRnor6.0
Rnor_5.0579,425,723 - 79,426,001UniSTSRnor5.0
RGSC_v3.4576,158,742 - 76,159,022UniSTSRGSC3.4
Celera571,780,715 - 71,780,993UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 41 59 6 302 141 11 137 78 92 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000047200   ⟹   ENSRNOP00000050549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl577,606,523 - 77,783,711 (-)Ensembl
mRatBN7.2 Ensembl572,811,410 - 72,988,525 (-)Ensembl
Rnor_6.0 Ensembl575,143,867 - 75,319,189 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085698   ⟹   ENSRNOP00000069065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl575,147,143 - 75,319,765 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141124   ⟹   ENSRNOP00000107103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl577,606,523 - 77,783,711 (-)Ensembl
RefSeq Acc Id: NM_001419684   ⟹   NP_001406613
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8577,606,523 - 77,783,292 (-)NCBI
mRatBN7.2572,811,410 - 72,988,185 (-)NCBI
RefSeq Acc Id: XM_039111040   ⟹   XP_038966968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8577,606,528 - 77,684,193 (-)NCBI
mRatBN7.2572,811,200 - 72,889,081 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001406613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966968 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050549
GenBank Protein P0C6B8 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000069065   ⟸   ENSRNOT00000085698
Ensembl Acc Id: ENSRNOP00000050549   ⟸   ENSRNOT00000047200
RefSeq Acc Id: XP_038966968   ⟸   XM_039111040
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001406613   ⟸   NM_001419684
- Peptide Label: precursor
- UniProtKB: P0C6B8 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000107103   ⟸   ENSRNOT00000141124
Protein Domains
EGF-like   HYR   Pentraxin (PTX)   Sushi   VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588987 AgrOrtholog
BioCyc Gene G2FUF-41187 BioCyc
Ensembl Genes ENSRNOG00000033110 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000047200 ENTREZGENE
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot
  3.40.50.410 UniProtKB/Swiss-Prot
  Complement Module, domain 1 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  HYR_dom UniProtKB/Swiss-Prot
  NOTCH1_EGF-like UniProtKB/Swiss-Prot
  Pentraxin-related UniProtKB/Swiss-Prot
  SEZ6_CSMD_C4BPB_Regulators UniProtKB/Swiss-Prot
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/Swiss-Prot
  VWF_A UniProtKB/Swiss-Prot
  vWFA_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 685899 ENTREZGENE
PANTHER PROTEIN CBR-CLEC-78 UniProtKB/Swiss-Prot
  PROTEIN CBR-CLEC-78 UniProtKB/Swiss-Prot
Pfam EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  Ephrin_rec_like UniProtKB/Swiss-Prot
  HYR UniProtKB/Swiss-Prot
  Pentaxin UniProtKB/Swiss-Prot
  Sushi UniProtKB/Swiss-Prot
  VWA UniProtKB/Swiss-Prot
PhenoGen Svep1 PhenoGen
PRINTS PENTAXIN UniProtKB/Swiss-Prot
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  HYR UniProtKB/Swiss-Prot
  PTX_2 UniProtKB/Swiss-Prot
  SUSHI UniProtKB/Swiss-Prot
  VWFA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000033110 RatGTEx
SMART CCP UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  Ephrin_rec_like UniProtKB/Swiss-Prot
  PTX UniProtKB/Swiss-Prot
  VWA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
  SSF53300 UniProtKB/Swiss-Prot
  SSF57184 UniProtKB/Swiss-Prot
  SSF57535 UniProtKB/Swiss-Prot
UniProt A0ABK0LQZ2_RAT UniProtKB/TrEMBL
  F1LPU2_RAT UniProtKB/TrEMBL
  P0C6B8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Svep1  sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1  LOC103692362  uncharacterized LOC103692362  Data merged from RGD:9130195 737654 PROVISIONAL
2014-08-25 LOC103692362  uncharacterized LOC103692362      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Svep1  sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1  LOC685899  similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685899  similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1  LOC682230  similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1  Data merged from RGD:1585759 1643240 APPROVED
2006-11-19 LOC685899  similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682230  similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL