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Gene: Rundc3b (RUN domain containing 3B) Rattus norvegicus

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Symbol:

Rundc3b

Name:

RUN domain containing 3B

RGD ID:

1587590

Description:

Orthologous to human RUNDC3B (RUN domain containing 3B); INTERACTS WITH acetamide; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC124740; RUN domain-containing protein 3B; similar to Rap2-binding protein 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RUNDC3B (RUN domain containing 3B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rundc3b (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rundc3b (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RUNDC3B (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RUNDC3B (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rundc3b (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RUNDC3B (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RUNDC3B (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rundc3b (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rundc3b (RUN domain containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RUNDC3B (RUN domain containing 3B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rundc3b (RUN domain containing 3B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rundc3b (RUN domain containing 3b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rundc3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rundc3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	26,417,501 - 26,554,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	26,417,437 - 26,554,403 (+)	Ensembl				GRCr8
mRatBN7.2	4	25,462,543 - 25,599,477 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	25,462,752 - 25,599,471 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	30,458,137 - 30,587,351 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	26,384,375 - 26,513,583 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	24,758,304 - 24,887,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	22,443,727 - 22,589,526 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	22,445,414 - 22,586,689 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	22,380,390 - 22,518,353 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	21,546,162 - 21,689,813 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	20,954,615 - 21,085,289 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

glucose (ISO)

lead diacetate (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

Moniliformin (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

terbufos (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:25931508	PMID:29476059

Genomics

Comparative Map Data

Rundc3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	26,417,501 - 26,554,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	26,417,437 - 26,554,403 (+)	Ensembl				GRCr8
mRatBN7.2	4	25,462,543 - 25,599,477 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	25,462,752 - 25,599,471 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	30,458,137 - 30,587,351 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	26,384,375 - 26,513,583 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	24,758,304 - 24,887,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	22,443,727 - 22,589,526 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	22,445,414 - 22,586,689 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	22,380,390 - 22,518,353 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	21,546,162 - 21,689,813 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	20,954,615 - 21,085,289 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

RUNDC3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	87,628,398 - 87,832,296 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	87,627,548 - 87,832,296 (+)	Ensembl			hg38	GRCh38
GRCh37	7	87,257,714 - 87,461,611 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	87,095,665 - 87,297,691 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	81,962,343 - 82,166,173 (+)	NCBI		Celera
Cytogenetic Map	7	q21.12	NCBI
HuRef	7	81,867,579 - 82,071,542 (+)	NCBI		HuRef
CHM1_1	7	87,187,835 - 87,391,791 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	88,878,278 - 89,082,221 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	86,589,043 - 86,792,931 (+)	NCBI

Rundc3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	8,540,336 - 8,673,079 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	8,540,334 - 8,672,952 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	8,490,336 - 8,623,084 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	8,490,334 - 8,622,952 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	8,490,336 - 8,622,952 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	8,496,342 - 8,628,958 (-)	NCBI		MGSCv36	mm8
Celera	5	8,410,690 - 8,543,386 (-)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	3.43	NCBI

Rundc3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	5,032,468 - 5,186,820 (+)	Ensembl
ChiLan1.0	NW_004955432	5,032,468 - 5,186,402 (+)	NCBI	ChiLan1.0	ChiLan1.0

RUNDC3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	105,505,965 - 105,713,961 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	153,770,603 - 153,978,599 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	79,621,222 - 79,829,021 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	93,270,709 - 93,477,463 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	93,270,747 - 93,477,463 (+)	Ensembl			panPan2	panpan1.1

RUNDC3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	13,764,583 - 13,932,978 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	13,803,576 - 14,019,704 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	13,356,985 - 13,504,772 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	13,549,867 - 13,697,960 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	13,549,867 - 13,697,578 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	13,733,175 - 13,901,620 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	13,458,776 - 13,627,233 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	13,742,371 - 13,911,298 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rundc3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	26,887,399 - 26,939,764 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936763	1,052,778 - 1,193,629 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936763	1,052,229 - 1,193,908 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RUNDC3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	92,528,662 - 92,823,561 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	92,525,589 - 92,823,574 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	101,967,854 - 102,119,244 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RUNDC3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	61,119,131 - 61,296,687 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	61,121,388 - 61,296,800 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	42,773,392 - 42,956,392 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rundc3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624809	5,560,661 - 5,741,546 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624809	5,565,197 - 5,741,425 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rundc3b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	140,374,128 - 140,503,453 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rundc3b
718 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	677
Count of miRNA genes:	292
Interacting mature miRNAs:	369
Transcripts:	ENSRNOT00000030224
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	13080146	58080146	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	32668025	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	28392287	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	32668025	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	34142783	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	34142783	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
70222	Eae2	Experimental allergic encephalomyelitis QTL 2	4.3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	4	22288453	40471598	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	31106810	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	28392287	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	1	45429897	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	32668025	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	28392287	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	40471598	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	8428551	30449094	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	33538816	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	32668025	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1354665	Stl10	Serum triglyceride level QTL 10	3.57		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	22288453	45429897	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	10758701	40490708	Rat

Markers in Region

RH140325

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,599,222 - 25,599,412 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,586,439 - 22,586,628	NCBI	Rnor6.0
Rnor_5.0	4	22,518,099 - 22,518,288	UniSTS	Rnor5.0
RGSC_v3.4	4	21,546,224 - 21,546,413	UniSTS	RGSC3.4
Celera	4	21,085,038 - 21,085,227	UniSTS
RH 3.4 Map	4	151.0	UniSTS
Cytogenetic Map	4	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	8	67	157	89	88	57	82	57	6	333	173	6	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001047116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC107563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030224 ⟹ ENSRNOP00000035622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	26,417,511 - 26,554,402 (+)	Ensembl
mRatBN7.2 Ensembl	4	25,462,752 - 25,599,471 (+)	Ensembl
Rnor_6.0 Ensembl	4	22,445,423 - 22,586,689 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087657 ⟹ ENSRNOP00000069461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	26,417,437 - 26,554,403 (+)	Ensembl
mRatBN7.2 Ensembl	4	25,462,752 - 25,599,471 (+)	Ensembl
Rnor_6.0 Ensembl	4	22,445,414 - 22,584,753 (+)	Ensembl

RefSeq Acc Id:

NM_001047116 ⟹ NP_001040581

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	26,417,688 - 26,554,404 (+)	NCBI
mRatBN7.2	4	25,462,752 - 25,599,474 (+)	NCBI
Rnor_6.0	4	22,445,423 - 22,586,690 (+)	NCBI
Rnor_5.0	4	22,380,390 - 22,518,353 (+)	NCBI
RGSC_v3.4	4	21,546,162 - 21,689,813 (-)	RGD
Celera	4	20,954,615 - 21,085,289 (+)	RGD

Sequence:

show sequence

CGTGCGTGCGTGTGAGTGAGCGTGTGTGTGTGAGTGAGCTTGTGTGTGAGCGTGTGTGCACGCG
CGCGTGGCACCAGGGTGGCGGGCGCGGGTGCTCCACTGCCTTCCACACACCCTGCCTGCTCCGC
GGCTCCTTCCTCGCCCCTCTCCCGCCCCGCGGGCTGCCATCCTGAGAGAAGGCCGCAGGTCACA
GGTGTGCTAGGCTTGCGGGACCGCTGGAGACAAAGGGGGCGCGGAGGTGAGCCCGCCATGGCCT
CCCGGAGCCTGGGGGGCCTGAGCGGGAGCCGCGGCGGCGGCAAGAAGAGCCTGAGCGCCCGCAA
CGCTGCGGTGGAGAGGAGGAACCTGATCACCGTGTGCAGATTTTCTGTGAAGACCCTGATTGAT
CGGTCTTGCTTTGAAACAATTGATGATTCTTCTCCTGAATTTAATAACTTTGCAGCTGTTCTGG
AACAAATTCTAAGTCACCGGCTGAAAGGTCAAGTAACCTGGTTTGGCTATGAAAGTCCTCGTAG
CTTCTGGGACTACATCAGAGTGGCTTGCCGGAAAGTTTCACAAAACTGTATCTGTAGTATTGAA
AATATGGAAAATGTCAGTTCCTCCAGAGCTAAGGGTAGAGCCTGGATCAGAGTAGCACTCATGG
AAAAACATTTGTCTGAATACATCTCTACAGCTTTGAGAGACTTCAAAACAACCAGGAGGTTTTA
TGAAGAAGGAGCGATTGTCCTGGGGGAAGAGGCAAACATGCTTGCTGGCATGCTGCTGGGCCTC
AACGCCATTGACTTCAGCTTCTGCCTAAAGGGAGAAGGATTGGATGGCACCTTCCCTGCTGTGA
TAGACTATACACCATATTTGAAGTTTGAGCAAAGTTCTGACAGCATCAGCAGTGATGAGGAAGA
GCTCAGGACATTCGGGAGCAGTGACAGTGAGGGCAGCACCCCTGAGAACGTGGGCCCACCTCTA
ATCCTGGACGAGAACAGCTGGTTCAACAAGTGCAAGAGAGTAAGGCAGAAGTACCAGCTCACCC
TGGAGCAGAAGGGTTATCTTGAAGAACTCTTACGGCTTCGTGAGAACCAGCTTTCTGAATCTGT
CTCTCAGAATAAAATCCTACTTCAGAGGATCGAAGATTCTGACCTGGCCCACAAACTGGAGAAA
GAACAGTTAGAATATATCATCGTGGAGCTTCAGGACCAGCTTAAAAGTTACCAAAGCCTTGACC
AGTTATCAGCAGAAGTCAGCCTTTCTCAGGCCTCATTGGATCCCGGCCACTCACAAGAAGGCGA
TGGAAAGCAAGACTCATTGAATTTCATCGGTGAAGGTAAAGAAGATACTCCCTCACTTCTTGGT
CTTTGTGGGTCACTAACATCAGTGGCAAGTTACAAGTCCCTAACAAGCCTAAAATCCAATGACT
GCCTTGCAAGCCCCACCACGGAGATAACAAGCCCAGGCCTGACTCCATCCTGAAAGACTACGTA
AAAACCCAAAGTTTCTGTATTGTAAATATCCTGTTTACATAAGTTTGGCTGCTGGGAGATCTTT
GAAATTTTATATTCTGGTACATGCGTAGCATTTTGTCGTTCGGAGATTTCAGTCCAGCCCAGGT
AAAGTTCCGAGGGTAAGGCATAGCAGTCCCCCTATTTTTCTTTTTAAATTAGTACATTTGTCAC
TGCGGATGTTTAAAGTTCAATAGGCTTTAAAAGTCTCACAAAGATTGTCTGAATCCATTATAAA
GTGTACATAGTTGTTATTCAACCGATTTTTTATATTTGTTTAAATGTGTCTTAGTGTCCAGAGA
CTAGATCCAGGTTTTATTCCAGAGACTTAAGCTTAATGGTTTCTTTCACTCCTTTATTTGGTGG
TTAAATTTGCACAAAAGGCAACTCTAATTTCATGACGCACTCCTGCGCTCTGTGTCTGTGTAAC
ATGCTTTGAGGGGAAGTCTCCAGCCGCAGCTATTTAAGTTTTCCTTTTGTCATTCGGTACCAAC
TTCTAGCATTTCATTAATTTTGTAGAAATGTGCCTTTTTAGGCGGTTGCTGACTTAATTTTAAG
GTATGAAGGAAAAGCATTTTATATATAAAAAATAAATGCATTTCTTAGACTTATTTTCCCCGGT
GTGCCTAAGACATTGGAAACCTTTCAAAATACAAAACAAATGTTGGCAAGGTATTTCTTACATC
GGAAGTTTCCAGTTTAATGAGTGATTTGAGAACTTTTAGAGAACAACCTCGTGAGTGACCAGGA
TAACTGACTGTGGATGTATGTCTGAGCCACAGTGCTATTTCTCCCTGTGTGCAACCACGAGTTA
TACTGGATGTTTCACAACCATTACCACTATTCCCTGATTTCTCATTTTTCAAACTGATCTTATA
CTTCAAAATCCTATACTTCTGTAGGAAAACAGGTTTTCTTCAAACAGTTGTGTTTCAAATCTCT
CTCTCTCTTTTTTTTTTACATTTTTTTGAAACAGCTACATGTGTCCCTAAAAATTCCACTGTAT
TGAAAACGAAGTGTATATTCTATAGTGAGTCACAGGAGGAAAACAAGTGTGCCAAAGACATTTC
CTACACTGTTCATGAAGGGGCCACAGTCCTCGCTCTTGTCTGTTAATTTTTATATTTAAACCTA
GCAGCGGTGACATGGCGGACGTTTATCCCTCCTAGAAAGCTTCCTGAGGAGAGCTGAACTCACA
CGTTCATTCCTTGTGCCCAAACTGTGTAGGAGAGGGAGGTTCTGGGAAATGCTTGGAGCTCAGT
CTCCTGGTGTAGAATCAGTCAATAGTAACGTGACCGGTGTCACATGTGAGACAGTGCAGACACT
AATTTCTGGGGCAATGGAAGCCTGGAAGCTCGAGGTAGACATTGCATTGGATGGCTCAGAACAC
ACTGAGAGCTTTCTTCCAGTAGGCGATATTAAAGCAGAGCACCTCTGTCTGCTTTGAACTGTGT
CTATCGTTTAAGAACACAGTCGCCAAGACCACTTTTAAATAGTGTCCGGAATAGCAAATCAAGA
CAGCAGGCCTGCAGGAGGCTGCATGGAGACTTAGATGGCCATGAGAATGTTGGGAATTTAGGCT
GGCCATGGGCACGCCTCTACTTCCCTAAGAACTCTCAAAGTGTTTACCCCTTTATCACCATGGC
CTGATCTCACCTGTCATTTATGATTTTTTCCAGATATAGAACATTGTTAAGATCTTTTCATACA
TTTTTATAAAGTAGAAGGGAATACAAGATTCCCCAGTTGGTACACTTTTTCATCTCTGTCCCAT
AGTAACACTAGTTTGTGACATATCCCTGCTGCAAACCACAGACTGAGACATGACACCTGAGGAC
CATGGCTTTCCCTCCGCTATTGGAGCTCTTGATACGAAGTTCATCTGCTACTGTGGAATCCGAG
TTTCTACAGTTGGTTCTGAGCTAGATGCAGTCCGTAATGCTTGCATGAGTGAACGGCGTCTCAG
TCTTTAATTACCAGTGGTACTGTGTATTTCTCAGAACCCCACAGAGAATGCCGGCTTAGTCTCT
TTCCGTCTGTATTCCGTTGCCTTGATGTACTATATTTGTTGCATGTATATTAAAAAAAATTTTT
AACCATAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236003 ⟹ XP_006236065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	26,417,501 - 26,554,404 (+)	NCBI
mRatBN7.2	4	25,462,546 - 25,599,477 (+)	NCBI
Rnor_6.0	4	22,443,727 - 22,589,526 (+)	NCBI
Rnor_5.0	4	22,380,390 - 22,518,353 (+)	NCBI

Sequence:

show sequence

CAGGATGATATTTTCTAGTTCCACCTATTTGCCTAACACTTTATATGCTTCCCTTCCAAATCTA
TCAAACAAGGTTGCCTACGATTTGACTTCAGACATCTTTTTACTTCCTATATCTCTTTGAGACA
GGGTTTTCCTATATAACATAGTTTTCGATTTGCACCTGAAATGTTCCTCACAGGCATGGGGTCT
CAAATGTTTGTCCCCACCTGGTAGCTTTATATTGGAAGGGTTGTAGAAACTTTGGACAGTAGGA
CCTATTTGAACTCCATTGAAAGATCCCTGATGGATTTCCCATCACTCCACATCCCCTCAGATTT
GATGTCATCTTCAATGCTCTCCTCTAGCCTTCCATGCCATGAAACTTCTGAAGCATTAACCCAT
TTTAGTCACAACAACACAAACATAATTAATAAAGCAAGGTATTCCTTCTACCTAAGTCATCAGA
ATTCTGGAATTGCAAACGTATGCTACTGTCCTTGCTCTAGAAATTTTCTTAATAATTAATGGTT
TTCTATGCATTTCCTTAGACACTTATAATCTCGGACTTAGAAAAGTAATCTCCAATGTATGTTC
TGTTTTTAATTATTTTTTAATAGTTTAAAGAGGTGAGACTTTGTCCTGATGATTTTAGATTTTC
AAAATTAAAAAACAAACAAACAAACAAACCCCCAAAACCCTGAAGTCTGGATATACTGGTTTAA
AGGCAGATGAACAGTAGTCTGAGGTGAATGCCAGAGGTCAGGGCCTCAAGCCAGGAGATCAGGC
CAGAGGAAGTGGAGACTCTGCAAAGAGGTCCTTCCAAGCTACTTATCAGGCCTCCAAGGTAGGA
TTTCCCTCTGCACTTGGTCAGACCTCCCCACGGCTCATGAGCTGCAACTCAGTTCAGATCTCAC
TGCACAGAACACTAGGCTGGACATCCACACAACACTCATTTTTCTATGATCAATTGAGTTTTAG
GCTGTTCTGGAGAAGACCGGTGGGAAGATGAGGCGAGGAACATCAAGAATTCTAACCAGATTCA
CGTGAAGAGAAATGTCACGGGCACATTCCCTGATGCAATTGTGTCGTTGTTTGTCAGGCTCAAA
GAGGTCCAAAAGGTACTCTTCTGTTCTAGATAACCCCATCCCCTATCCCCCAACTGAGGCATTC
TCCTGCTGAGGCTACTGAAGCTCCAGAACAAGGAATCTGTCATGAACATTTGAGACTTAGCCTT
GTCAGGGTGGCTGCGGACCAGAGTCGCTGCGGATTAGGCACATTAAAGCCGGTTTTCCAAGCCA
CCCTGCCTCGCCGCGCGCACCAAGAAGCCGCACGAGACCAGCCCTCATTCTGACAGAGGCCCAC
GCGCCAGGGCGGGGTTTAAGTGAGCCCTTTTAAAGGCTCCTGGGGAGGGTTCCGCCCCCGCCTC
TCACCATTGGTTCTCTCTGGAGCGGCTTTGTTCCCATAGGTGCAGGGGGCGGGGCTGCATGAGA
CTGGCGTGGGGGCTTCACCTCAGCGGCCCCCTCCCTTCTAGAAGAATGACGTGCGGTTAGGCCT
GCGGGGCTGACAGGCTCGCCCGCGCACTGCTACTGCGGCGCCCCTAGGGAAGCAGCGCAGCTCC
CGACTTGGAGCCCGCCCGCGCTTCTCTCGTGGACGGCGGCGGCGGCGGCGGCGGCGCGCGCGGC
GCGCGAGCCAGCGAGCGAGGGCGGAGGTGGCTCGTGCGTGCGTGTGAGTGAGCGTGTGTGTGTG
AGTGAGCTTGTGTGTGAGCGTGTGTGCACGCGCGCGTGGCACCAGGGTGGCGGGCGCGGGTGCT
CCACTGCCTTCCACACACCCTGCCTGCTCCGCGGCTCCTTCCTCGCCCCTCTCCCGCCCCGCGG
GCTGCCATCCTGAGAGAAGGCCGCAGGTCACAGGTGTGCTAGGCTTGCGGGACCGCTGGAGACA
AAGGGGGCGCGGAGGTGAGCCCGCCATGGCCTCCCGGAGCCTGGGGGGCCTGAGCGGGAGCCGC
GGCGGCGGCAAGAAGAGCCTGAGCGCCCGCAACGCTGCGGTGGAGAGGAGGAACCTGATCACCG
TGTGCAGATTTTCTGTGAAGACCCTGATTGATCGGTCTTGCTTTGAAACAATTGATGATTCTTC
TCCTGAATTTAATAACTTTGCAGCTGTTCTGGAACAAATTCTAAGTCACCGGCTGAAAGGTCAA
GTAACCTGGTTTGGCTATGAAAGTCCTCGTAGCTTCTGGGACTACATCAGAGTGGCTTGCCGGA
AAGTTTCACAAAACTGTATCTGTAGTATTGAAAATATGGAAAATGTCAGTTCCTCCAGAGCTAA
GGGTAGAGCCTGGATCAGAGTAGCACTCATGGAAAAACATTTGTCTGAATACATCTCTACAGCT
TTGAGAGACTTCAAAACAACCAGGAGGTTTTATGAAGAAGGAGCGATTGTCCTGGGGGAAGAGG
CAAACATGCTTGCTGGCATGCTGCTGGGCCTCAACGCCATTGACTTCAGCTTCTGCCTAAAGGG
AGAAGGATTGGATGGCACCTTCCCTGCTGTGATAGACTATACACCATATTTGAAGTTTGAGCAA
AGTTCTGACAGCATCAGCAGTGATGAGGAAGAGCTCAGGACATTCGGGAGCAGTGACAGTGAGG
GCAGCACCCCTGAGAACGTGGGCCCGCCTCTAATCCTGGACGAGAACAGCTGGTTCAACAAGTG
CAAGAGAGTAAGGCAGAAGTACCAGCTCACCCTGGAGCAGAAGGGTTATCTTGAAGAACTCTTA
CGGCTTCGTGAGAACCAGCTTTCTGAATCTGTCTCTCAGAATAAAATCCTACTTCAGAGGATCG
AAGATTCTGACCTGGCCCACAAACTGGAGAAAGAACAGTTAGAATATATCATCGTGGAGCTTCA
GGACCAGCTGACTGTACTAAAGAATAATGATTTAAGATCAAGACAAGAGTTAACTGCCCACCTC
ACCAACCAGTGGCCTTCCCCAGGAGCTCTGGATGTCAATGCTGTTGCCTTGGATACCTTGCTTT
ACCGAAAACACAATAAACAGTGGTATGATAAAAGTTACCAAAGCCTTGACCAGTTATCAGCAGA
AGTCAGCCTTTCTCAGGCCTCATTGGATCCCGGCCACTCACAAGAAGGCGATGGAAAGCAAGAC
TCATTGAATTTCATCGGTGAAGGTAAAGAAGATACTCCCTCACTTCTTGGTCTTTGTGGGTCAC
TAACATCAGTGGCAAGTTACAAGTCCCTAACAAGCCTAAAATCCAATGACTGCCTTGCAAGCCC
CACCACGGAGATAACAAGCCCAGGCCTGACTCCATCCTGAAAGACTACGTAAAAACCCAAAGTT
TCTGTATTGTAAATATCCTGTTTACATAAGTTTGGCTGCTGGGAGATCTTTGAAATTTTATATT
CTGGTACATGCGTAGCATTTTGTCGTTCGGAGATTTCAGTCCAGCCCAGGTAAAGTTCCGAGGG
TAAGGCATAGCAGTCCCCCTATTTTTCTTTTTAAATTAGTACATTTGTCACTGAGGATGTTTAA
AGTTCAATAGGCTTTAAAAGTCTCACAAAGATTGTCTGAATCCATTATAAAGTGTACATAGTTG
TTATTCAACCGATTTTTTATATTTGTTTAAATGTGTCTTAGTGTCCAGAGACTAGATCCAGGTT
TTATTCCAGAGACTTAAGCTTAATGGTTTCTTTCACTCCTTTATTTGGTGGTTAAATTTGCACA
AAAGGCAACTCTAATTTCATGACGCACTCCTGCGCTCTGTGTCTGTGTAACATGCTTTGAGGGG
AAGTCTCCAGCCGCAGCTATTTAAGTTTTCCTTTTGTCATTCGGTACCAACTTCTAGCATTTCA
TAAATTTTGTAGAAATGTGCCTTTTTAGGCGGTTGCTGACTTAATTTTAAGGTATGAAGGAAAA
GCATTTTATATATAAAAAATAAATGCATTTCTTAGACTTATTTTCCCTGGTGTGCCTAAGACAT
TGGAAACCTTTCAAAATACAAAACAAATGTTGGCAAGGTATTTCTTACATCGGAAGTTTCCAGT
TTAATGAGTGATTTGAGAACTTTTAGAGAACAACCTCGTGAGTGACCAGGATAACTGACTGTGG
ATGTATGTCTGAGCCACAGTGCTATTTCTCCCTGTGTGCAACCACGAGTTATACTGGATGTTTC
ACAACCATTACCACTATTCCCTGATTTCTCATTTTTCAAACTGATCTTATACTTCAAAATCCTA
TACTTCTGTAGGAAAACAGGTTTTCTTCAAACAGTTGTGTTTCAAATCTCTCTCTCTCTTTTTT
TTTTACATTTTTTTTGAAACAGCTACATGTGTCCCTAAAAATTCCACTGTATTGAAAACGAAGT
GTATATTCTATAGTGAGTCACAGGAGGAAAACAAGTGTGCCAAAGACATTTCCTACACTGTTCA
TGAAGGGGCCACAGTCCTCGCTCTTGTCTGTTAATTTTTATATTTAAACCTAGCAGCGGTGACA
TGGCGGACGTTTATCCCTCCTAGAAAGCTTCCTGAGGAGAGCTGAACTCACACGTTCATTCCTT
GTGCCCAAACTGTGTAGGAGAGGGAGGTTCTGGGAAATGCTTGGAGCTCAGTCTCCTGGTGTAG
AATCAGTCAATAGTAACGTGACCGGTGTCACATGTGAGACAGTGCAGACACTAATTTCTGGGGC
AATGGAAGCCTGGAAGCTCGAGGTAGACATTGCATTGGATGGCTCAGAACACACTGAGAGCTTT
CTTCCAGTAGGCGATATTAAAGCAGAGCACCTCTGTCTGCTTTGAACTGTGTCTATCGTTTAAG
AACACAGTCGCCAAGACCACTTTTAAATAGTGTCCGGAATAGCAAATCAAGACAGCAGGCCTGC
AGGAGGCTGCATGGAGACTTAGATGGCCATGAGAATGTTGGGAATTTAGGCTGGCCATGGGCAC
GCCTCTACTTCCCTAAGAACTCTCAAAGTGTTTACCCCTTTATCACTATGGCCTGCTCTCACCT
GTCATTTATGATTTTTTCCAGATATAGAAAGAACATTGTTAAGATCTTTTCATACATTTTTATA
AAGTAGAAGGGAATACAAGATTCCCCAGTTGGTACACTTTTTCATCTCTGTCCCATAGTAACAC
TAGTTTGTGACATATCCCTGCTGCAAACCACAGACTGAGACATGACACCTGAGGACCATGGCTT
TCCCTCCGCTATTGGAGCTCTTGATACAAAGTTCATCTGCTACTGTGGAATCCGAGTTTCTACA
GTTGGTTCTGAGCTATATGCAGTCCGTAATGCTTGCATGAGTGAACGGCGTCTCAGTCTTTAAT
TACCAGTGGTACTGTGTATTTCTCAGAACCCCACAGAGAATGCCGGCTTAGTCTCTTTCCGTCT
GTATTCCGTTGCCTTGATGTACTATATTTGTTGCATGTATATTAAAAAAAATTTTTAACCATAC
AGTACTGGTCTTTTTCCTTGACAAAAATAGTTACCTGACTTGTGTTCACTGAACTATGTCAGCA
AATAGAGTAAATAGTGGGGACTAATTAAACCCAACACACTAATGAACATGATTGGAGGAAACCC
TTTTACCGAGGTTGAATATTATATGTACTTTTAAAATGCTCTTTATAGAGCACATGACATTTTG
AGAGTTACTGATTCCATAGAGGACAATGGCCCCATGTAATTGAGTCGAGTTGAAAATTCCTATC
CCTTAGTGACATCACAACTGACAAGATTCTGATACATTCTAAATTTCTTATAATTCAAGAACTA
GGGGAAAGGGAAAAGGAAATTAAGTCAACCAGTAGTTGACAGGCAAAACCCTCAACATGATTAT
AGTCATAGGCCTGAAAATATGGTGACATGTAGCCATATGATGTAATTAAAACTTGAGTTTCCCT
GTTCTAGCAAATATTAAACTTCACTGAATATAAGACAGATTTCTCCTATATTCCTTTATTGATT
TCTTGGACCTTTCCAAAAGCACCAGGACTAGCATGTAATGGACTTGGGGATTCTTTCCTAAGAG
TCCTTCTCATCACAGTATGGATTAATCTGTATCTACAAGAGTGTCTTTCCTGGCTCCCCAACCG
TGCCTGTGGATTAGTCTGTATATCTACATGAGTTTATCTCCCGGCTTCACCATTGTGTGTTGTA
ACATGGATACAGGCAAGACAGAGAGAAGCTGATATTTTTCTTTCTATGAAACTCAGGCCTAATC
TGTACAGGCCCTTTTCCTGGTACCAAGGAGCAGGAAGTGGACCTCAGAGTCTGGTGACATGCTT
TAACAATCTGGCAAAGTGTTCTTTCTGCAATATGATTATAAATCAAATTATGCTTTCCTGAATT
CAGTTTGCAAGTATTTTCTGCAGATTTTTTTTTTAATTTATGTTCAGTAAAGAGACTTGACTAC
AATTGTCTTTTTTTGTTGTCTTCATGAAGTTTTGGTATCAGGATGATTATGGCTTCATAAAATG
GGTTAAGTAGTGTTAAGTCTTTTACTATTTTATATAAAAGTTTGAGATGACTTATGTTAGATCT
CATAGAGCCTAGTAATCAATAGCCTGTAAAATTCATACAAATATTGTTTGAGTCCATTGTAAAC
TGTACATGGTTGTTATTCAATTGTTTTAACTTTTTATTCATTCTTTGTGAGGTTTGCATTGTTC
ACCCTAATCGCACTCATCTCCCCGTCCACTGTACTTGCCCTCTGCCCTGACAACACCCCCACCC
CCAGACAAAAAATAATTCTTGTTGCAGAAGCTGTGGTGTGTAGCAGTGTGTCCAAAGTATGCCC
TTTTGTCTAAACAGCTTTACTTGCAAATGTTCTTTGCGGTATATCCATTGGTCTGGTCCCAGGA
CTCTAGCTTCTGTTATACTATCAATACTGGGTCCTACTAGATTCCTGTCACGGGGATCCTGTAG
TTTTGGATCTGTAGGACTGCCTCCTATGTACTCTCCATCAGTTCATAGATGGGGTAGATGTTGG
GGAGTGTCAACTTAAAGTCCTGGATTTGGGCCTGGGCTGTAGCTGAGTGGGTCAGCACCCCAGC
TCCCCCACACCAAAACCCCCATGGGAGAGCTCTCCAGCAATTGCCCTGACTAGCTCACCCAGTG
CTCTCACCCAGTGCTGAGCTCCTCCACTCTCATGCCCTCAGGCTGACTCACCTGCATCCATCCC
CAGGGGGCCAGCCCTGCTGTCCAGTTGAGATGTGGACTGCTCTCCCAAGTACCACACTCATCGA
GGGGCTGCACCAGCTCTCTTATGCCCTTGGAGCTGGCTCACCTCTAACCCCCCCCACAACCATG
GACAGCTCTACTGTGCTGACCAGATGGAGGGCCTGATCTCCTGAGTGTTGCAGTGAGTGTCAGG
GACAGCTCTCCTGCACTCATGACCTTGGGGCCAGCTCTCCCATCGTCCACAGGTGGTGAAGGGG
ATGTGAGGGAGGAAATCTCTCCCTTTCCACAGCACCACACATTAGACAAATGGCCAGGCCAGCT
TTCCCACACTTACACACCCAGAACCAGCTCACTCACAACCCTCTGCAACCAGGGCCAGCTCTGC
TATGCTTCCCGGGCAGATGAGGGGCCCACTCGCCTCAGTACTGCAGTTGGAGACTATAGATGTC
CGCCTGACCTTTGGCAGTAACAGACCCTTGCTGTTGAAGCACCATGAACTTAGACATGGCCCTG
GGTGGCAGCATGGGCCAGGACACCACCATGACCTCAGCTGGCATCACTGGCCACTCTCATCAAT
CAGGCTTTTCTCACCACTCAACAATTCCACCGCCCTTCCTGGTACAAACATCCCTCTTCCTTCC
CATCTCCCCACCACTTACTTGCCCATCTTAATGATGCCTGGGCCTCCGGGTGTCTGGTGTCACC
TCAGGTGTGTTATGTCCCACCCATGCACTGGGCAGGGATTGTCTGAAGCATGGACTACACAGCC
AGGCCTCTGTGGGCACCAAGCTGGAGGGTCATCTCAGGCTTGCTCTGTAGCCCGGGCTGCATGT
CACTGAATGGGGGTCTTCTCAGGTATGGTCGCCCTGCCTGGGCAGTGTGGTACCTGACTGGCTC
AACTTGCTTTTTATCTATGTGTTCTGAATCTTGGTGTCCAGAAACAGGATCCAGGCTTTATTCC
AGAGTCTTAAGCTTAGTGTTTTCTTTCATTCCATTATTCGGTACTTAAAATTTCACAAAAGATA
ACTAACTAATGTCATTAAGTATTTTCTAAGTTCCAATGTCTATGTGCTGTTTGTATAAGGGAAA
GCTAGATTTGCCTGTTTTT

hide sequence

RefSeq Acc Id:

XM_039108366 ⟹ XP_038964294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	26,472,510 - 26,554,404 (+)	NCBI
mRatBN7.2	4	25,517,596 - 25,599,477 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001040581	(Get FASTA)	NCBI Sequence Viewer
	NP_001430652	(Get FASTA)	NCBI Sequence Viewer
	XP_006236065	(Get FASTA)	NCBI Sequence Viewer
	XP_038964294	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07564	(Get FASTA)	NCBI Sequence Viewer
	EDL84319	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035622
	ENSRNOP00000035622.4
	ENSRNOP00000069461
GenBank Protein	Q3B7K9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001040581 ⟸ NM_001047116

- UniProtKB:

Q3B7K9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASRSLGGLSGSRGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAA
VLEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVA
LMEKHLSEYISTALRDFKTTRRFYEEGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGTFP
AVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSEGSTPENVGPPLILDENSWFNKCKRVRQKYQ
LTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQS
LDQLSAEVSLSQASLDPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKS
NDCLASPTTEITSPGLTPS

hide sequence

RefSeq Acc Id:	XP_006236065 ⟸ XM_006236003
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVF1 (UniProtKB/TrEMBL), A6K237 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASRSLGGLSGSRGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAA VLEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVA LMEKHLSEYISTALRDFKTTRRFYEEGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGTFP AVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSEGSTPENVGPPLILDENSWFNKCKRVRQKYQ LTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLTVLKN NDLRSRQELTAHLTNQWPSPGALDVNAVALDTLLYRKHNKQWYDKSYQSLDQLSAEVSLSQASL DPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPTTEITSPG LTPS hide sequence

Ensembl Acc Id:

ENSRNOP00000069461 ⟸ ENSRNOT00000087657

Ensembl Acc Id:

ENSRNOP00000035622 ⟸ ENSRNOT00000030224

RefSeq Acc Id:	XP_038964294 ⟸ XM_039108366
- Peptide Label:	isoform X2

Protein Domains

RUN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3B7K9-F1-model_v2	AlphaFold	Q3B7K9	1-403	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692836

Promoter ID:

EPDNEW_R3354

Type:

multiple initiation site

Name:

Rundc3b_1

Description:

RUN domain containing 3B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	22,445,356 - 22,445,416	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587590	AgrOrtholog
BioCyc Gene	G2FUF-45824	BioCyc
Ensembl Genes	ENSRNOG00000008463	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000030224	ENTREZGENE
	ENSRNOT00000030224.6	UniProtKB/Swiss-Prot
	ENSRNOT00000087657	ENTREZGENE
Gene3D-CATH	1.20.58.900	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7938579	IMAGE-MGC_LOAD
InterPro	Run_dom	UniProtKB/Swiss-Prot
	Run_dom_sf	UniProtKB/Swiss-Prot
	RUN_RUNDC3B	UniProtKB/Swiss-Prot
	RUNDC3A_B	UniProtKB/Swiss-Prot
KEGG Report	rno:688590	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124740	IMAGE-MGC_LOAD
NCBI Gene	688590	ENTREZGENE
PANTHER	RUN DOMAIN-CONTAINING 3 PROTEIN RUNDC3	UniProtKB/Swiss-Prot
	RUN DOMAIN-CONTAINING PROTEIN 3B	UniProtKB/Swiss-Prot
Pfam	RUN	UniProtKB/Swiss-Prot
PhenoGen	Rundc3b	PhenoGen
PROSITE	RUN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008463	RatGTEx
SMART	RUN	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF140741	UniProtKB/Swiss-Prot
UniProt	A0A0G2JVF1	ENTREZGENE, UniProtKB/TrEMBL
	A6K237	ENTREZGENE, UniProtKB/TrEMBL
	Q3B7K9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Rundc3b	RUN domain containing 3B	MGC124740	similar to Rap2-binding protein 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	MGC124740	similar to Rap2-binding protein 9	LOC682723	similar to Rap2-binding protein 9	Data merged from RGD:1595317	1643240	APPROVED
2006-11-20	LOC682723	similar to Rap2-binding protein 9			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	MGC124740	similar to Rap2-binding protein 9			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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