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Gene: Spidr (scaffold protein involved in DNA repair) Rattus norvegicus

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Symbol:

Spidr

Name:

scaffold protein involved in DNA repair

RGD ID:

1566036

Description:

Predicted to be involved in several processes, including cellular response to camptothecin; cellular response to hydroxyurea; and regulation of double-strand break repair. Predicted to be active in nuclear chromosome and nucleoplasm. Human ortholog(s) of this gene implicated in ovarian dysgenesis 9. Orthologous to human SPIDR (scaffold protein involved in DNA repair); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498119; LOC498119; MGC156776; RGD1566036; scaffolding protein involved in DNA repair; similar to RIKEN cDNA 2310008H04; uncharacterized protein LOC498119

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	98,270,779 - 98,511,760 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	98,270,224 - 98,528,748 (-)	Ensembl				GRCr8
mRatBN7.2	11	84,766,593 - 85,007,597 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	84,766,593 - 85,007,600 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	93,498,564 - 93,734,667 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	86,159,715 - 86,395,832 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	85,213,308 - 85,449,420 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	89,009,931 - 89,260,361 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	89,009,931 - 89,260,297 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	92,163,149 - 92,313,960 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	11	92,071,681 - 92,113,042 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	86,830,121 - 86,918,203 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	83,509,894 - 83,748,337 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

ovarian dysgenesis 9 (ISO)

primary ovarian insufficiency 16 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

FR900359 (ISO)

fulvestrant (ISO)

methapyrilene (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to camptothecin (ISO)

cellular response to hydroxyurea (ISO)

cellular response to ionizing radiation (ISO)

DNA damage response (ISO)

double-strand break repair via homologous recombination (IBA,ISO)

positive regulation of double-strand break repair (ISO)

positive regulation of protein-containing complex assembly (ISO)

regulation of double-strand break repair via homologous recombination (ISO)

regulation of establishment of protein localization to chromosome (IBA,ISO)

Cellular Component

nuclear chromosome (IBA,ISO)

nucleoplasm (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23509288	PMID:23754376

Genomics

Comparative Map Data

Spidr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	98,270,779 - 98,511,760 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	98,270,224 - 98,528,748 (-)	Ensembl				GRCr8
mRatBN7.2	11	84,766,593 - 85,007,597 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	84,766,593 - 85,007,600 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	93,498,564 - 93,734,667 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	86,159,715 - 86,395,832 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	85,213,308 - 85,449,420 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	89,009,931 - 89,260,361 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	89,009,931 - 89,260,297 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	92,163,149 - 92,313,960 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	11	92,071,681 - 92,113,042 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	86,830,121 - 86,918,203 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	83,509,894 - 83,748,337 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

SPIDR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	47,260,878 - 47,736,306 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	47,260,878 - 47,736,306 (+)	Ensembl			hg38	GRCh38
GRCh37	8	48,173,470 - 48,648,868 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	48,336,095 - 48,811,028 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	44,177,794 - 44,633,625 (+)	NCBI		Celera
Cytogenetic Map	8	q11.21	NCBI
HuRef	8	43,638,756 - 44,111,478 (+)	NCBI		HuRef
CHM1_1	8	48,225,097 - 48,700,450 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	47,636,640 - 48,112,023 (+)	NCBI		T2T-CHM13v2.0

Spidr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	15,707,088 - 15,964,715 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	15,707,088 - 15,964,715 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	15,889,224 - 16,146,851 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	15,889,224 - 16,146,851 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	15,889,320 - 16,146,926 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	15,802,805 - 16,060,411 (-)	NCBI		MGSCv36	mm8
Celera	16	16,460,508 - 16,718,485 (-)	NCBI		Celera
Cytogenetic Map	16	A2	NCBI
cM Map	16	10.09	NCBI

Spidr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	7,359,670 - 7,711,680 (+)	Ensembl
ChiLan1.0	NW_004955454	7,360,144 - 7,710,077 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPIDR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	62,896,094 - 63,371,975 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	38,590,234 - 39,065,733 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	43,691,454 - 44,166,259 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	41,083,934 - 41,559,683 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	41,083,964 - 41,558,170 (+)	Ensembl			panPan2	panpan1.1

SPIDR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	79,188 - 503,687 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	79,185 - 514,797 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	90,608 - 526,254 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	28,419 - 463,757 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	28,198 - 451,894 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	13,433 - 448,429 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	31,778 - 466,957 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	1,366,967 - 1,802,342 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spidr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	79,731,806 - 80,126,422 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936590	4,921,542 - 5,316,195 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936590	4,921,755 - 5,041,573 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPIDR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	79,874,831 - 80,190,655 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	79,874,937 - 80,190,744 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	87,754,732 - 87,756,996 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPIDR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	43,380,207 - 43,872,077 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	43,380,244 - 43,872,937 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	98,198,670 - 98,702,703 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spidr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624735	7,724,048 - 8,172,725 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spidr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	1,226,067 - 1,448,030 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	509
Count of miRNA genes:	253
Interacting mature miRNAs:	295
Transcripts:	ENSRNOT00000057502
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat

Markers in Region

D11Got76

Rat Assembly	Chr	Position (strand)	Source
Celera	11	83,540,545 - 83,540,677	UniSTS
RH 2.0 Map	11	0.0	RGD
Cytogenetic Map	11	q23	UniSTS

RH132793

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	84,766,809 - 84,767,021 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	89,010,148 - 89,010,359	NCBI	Rnor6.0
Rnor_5.0	11	92,071,898 - 92,072,109	UniSTS	Rnor5.0
Celera	11	83,510,111 - 83,510,322	UniSTS
RH 3.4 Map	2	859.79	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC129120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057502 ⟹ ENSRNOP00000054310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	98,270,779 - 98,511,729 (-)	Ensembl
mRatBN7.2 Ensembl	11	84,766,593 - 85,007,563 (-)	Ensembl
Rnor_6.0 Ensembl	11	89,010,377 - 89,260,297 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089517 ⟹ ENSRNOP00000071950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	98,270,779 - 98,528,748 (-)	Ensembl
mRatBN7.2 Ensembl	11	84,766,593 - 85,002,150 (-)	Ensembl
Rnor_6.0 Ensembl	11	89,009,931 - 89,239,798 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111413 ⟹ ENSRNOP00000078167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	98,270,779 - 98,511,729 (-)	Ensembl
mRatBN7.2 Ensembl	11	84,766,597 - 85,007,600 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173455 ⟹ ENSRNOP00000101694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	98,270,224 - 98,511,729 (-)	Ensembl

RefSeq Acc Id:

NM_001100988 ⟹ NP_001094458

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,779 - 98,511,729 (-)	NCBI
mRatBN7.2	11	84,766,593 - 85,007,563 (-)	NCBI
Rnor_6.0	11	89,009,931 - 89,260,332 (-)	NCBI
Rnor_5.0	11	92,071,681 - 92,113,042 (-)	NCBI
Rnor_5.0	11	92,163,149 - 92,313,960 (-)	NCBI
RGSC_v3.4	11	86,830,121 - 86,918,203 (-)	RGD
Celera	11	83,509,894 - 83,748,337 (-)	RGD

Sequence:

show sequence

CTGAGAGTGAGAGGGGCGGACGGTGCTTGTTAACATGTCTGGAACCCGCCGCCCCGGCGTGTCC
AAGAGGAAAAGGAGTTGGTGTATAGAACACCCATTTTTTCTAGAAGAGAGGTCACAGCAGTTGA
GAAGGGCAAATTTCAAGACAGTGAAAGCAACTGACTCTCTCTCTAAAGCATGGCTCAAGTGTGG
AGAAGGATTTCAGGACACCTCTGAGACCCTGCCATTAGCAAGCGAAAAGACAGATATTACTGAA
AAGAACCTGGAATTACCTCCAAGACCAAAGACAGATGAATTACATGTTATTGACTGGGAGATTA
ACAGTGACACAGAAGATCCTGGTGGGCCTAGTGAGTGTGAAGATGATGAGGGAGCCCTGGACAT
TTCAGACTGTGCTTCTTTTGCAAGTGGTCATTCTCTGACAAGTGATGACAGCCTACCTGAGCCC
CCTGAGCAAATTTCTACAGAAATTTTGGAGTATTCATCAGATAGTGAAAGAGAAGATGACTCAG
AGCATGCCCTGTTCATTGATTCAGAATCGCCTCACAAATACCAGGTGGAATTTAAATCAGATGT
AAGACAGTTTTTGGATAATCAGACTGACTCAGGAGCAAATTCAGCTGAGCCCACATTGAAAACA
CCCCATAAATATACGGCCAAGTTTTCAAAGACTCCAGAAAATTCAACAACAAAGAAGAAGTTTT
TAAGAGGTCGACTAGCAGAACGACTCCAAGAACTACAGAATCGAGAGAGATCTGCCATTTCATT
GTGGAGACATCGATGTGTTGCTTACCAAATGACACCATTAGGCAGAAAATCTGGTGTATTAACT
GTGAAAATTCTAGAACTACATGAAGAATGCACCATGCAAGTTGCAGTATGTGAGCAGTTAGCAG
GGCCGCCAATCACCAGCGCTCCTAGAGGAACAGCTACTAGACCTGGAGCCTACCTGAAGGTTCT
CTTTACCAGAGAAACTGCAAATCACTTAATGGGGCAGCCCCAGGACATCATTTACATCTTCCCT
CCTTGGCAAAAACTTCTTATCCCAAATGGAAGTTTCTCTATTATTCTAAATACTTATTTTTGTC
AGAAAGCTATTGCAAAAGAAACAGTGCATGAAGACCTGTACAGTCAGGACACATCTCTTCCAAG
GAGAAATATAACTTTGGCCCAGAGGTTTAGAATCAAGGGCATAACAAACAGTTCATCCAGCAGC
CAGACTGGATATGATACCCTGGCCACCACTGGCACAGACTGGACCCACGGACATGACAAGGCAG
AGCAACATCTTATCGTTGGTGCTCCCCTGAGGGATTCTCTTCTGGACATTGTGGAAAGCCAAAG
AGCTGGCCCATGGTCTGGGGTCAGGGTCCGAGTAGTAGTGCAGAGAGTTTACTCTCTTCTCAGC
AGAGATGGTGCCAGGAGCCAACACAGGCTCACAGGGGAGCATGCAGGATCACCTGGAGCATGGT
CCTGCCTTCTAGTGCAGGATGCCTGTGGGATGTTCGGGGAAGTGTACTTGAACAGCACCCTCTG
GAAGGACAGACAGTTAGAAGGGAGGTCCTGCAGCATGTCGGGAGTGAAGGTTCTACAGAAAGCT
ACAAGAGGAAGGACACCAGGGCTCTTCAGTTTAATTGACAGTCTGTGGCCCCCAGTGATACCTC
TGAACAAGCCTTCCTGTGACGAGCCCAGTGGAGAGACAAAGACTTATCTGCCTCCTCCTGTCTT
CTGTTATATCTTCTCTGCACATCCAAATCTGGAACAAATTGATGCAATTGAAGGAGACACCATT
TCCAAGCTTTACAAGCCTCCAGTTGTCCACTGTTTAAAAGAAATCCTCCAGACTAATGAACATG
GTACACGTTGCAGCTTCTATGCCAGAGTGATTTATCAAAAGCCACAGCTAAAGAATCTTTTGGC
ACAAAAGGAAATCTGGCTGGTGGTGACTGACATTACCCTACAAATACAAGATGAAAGGGACCAC
TCTCTTCCCAAAACCCTGCCAGTCTATATAGCCCCCTCATGTGTGCTGGGCCCAGAGGTTGTAG
AAGAACTTGCCAGGCCGGCATCTCACACCTTACTTTTCAGGGATACTCTTCGAGACAATGGTCA
GATTGTTTGTATTGAACGGACAGTCCTCATACCCCAGAAACTTCTCTTGTGTGTACCTTCTTCC
TGTGACTTGCCTGGCCCAGTGACAGTAGATGAACTAAGCCTCCTCACACCTGTCAACTCCATTT
GCAGTGTGCAAGGTACCGTGGTTGATATAGATGAGAGCACTGCTTTCTCATGGCCTGTGTGTGA
CCAGTGTGGCAATGGGAGATTGGAACAGAAGCCAGAAGATGGAGGCTCCTTCTCCTGTGGGGAC
TGTTCCCAACTGGTCCTGTCACCTCTTCAAAAGAGACAGCTGCATGTCTTTCTGGACTGCCCCA
CAAGACCTGAGAGTACTGTGAAGGTCAAGCTGTTGGAGAGCAGTATTTCTTTACTTCTGATGTC
CGCTGCTTTCAAGGATGGGAATTATGAAGTAGAGAACATCCTTGGGAAGGAGATGGGACCGTTA
CTCTGCTTTGTCCAGTCCGTCACTACACAGCAGACCAGCTGCATCACTCTGGAAGAGATTGAGC
TTCTGAGTACAGCGGGAGCCACTGCTGCTCCGCCTCCTCCTCCCTGACATCTGCGCCCTTGGCA
GTGAGGCCAGGGACTTGATCTGGGGAATCCGAATCGGGTTAACTCTGTAGTGTTTTTATAGTTT
TAAGTTTAGTGCGTTTCTTTTCTTTCCTTTTTTTTTTTTTCTGGTAAAGAGGATATTTTGTAAA
TTAAAATTCAAAATACCTCTGTTCGATCTTTTTTTCTACTTTACCTTCCTACAAATTTGAGGAC
ATTTCTTTGAGTGTTTCTCCTGTCTTCTTTGTCTTCATTTTGTGCTGCTTAGGCATTGTTATTG
ATCTATTAGGAAATGTGCTTTGTTGTAGTTTAAACTGTTTACAATTAGCAATATGTATGTGGTT
TTCTTTGCAGTATTTAATATTCTCTGTAAGACTATTCTGTAAAGCTTCAACCAATATCTCATGT
TGAGATATTACTGTTCTGTTAACAATAAATAAATGTCCAACACTTAAAAAAAAAAAAAAAAAAA
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008768898 ⟹ XP_008767120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,760 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI
Rnor_6.0	11	89,009,934 - 89,260,361 (-)	NCBI

Sequence:

show sequence

CGGAGGGAGGGAATGGCTTCCGGAAGGGGCTGAGAGTGAGAGGGGCGGACGGTGCTTGTTAAAC
ATGTCTGGAACCCGCCGCCCCGGCGTGTCCAAGAGGAAAAGGAGTTGGTGTATAGAACACCCAT
TTTTTCTAGAAGAGAGGTCACAGCAGTTGAGAAGGGCAAATTTCAAGACAGTGAAAGCAACTGA
CTCTCTCTCTAAAGCATGGCTCAAGTGTGGAGAAGGATTTCAGGACACCTCTGAGACCCTGCCA
TTAGCAAGCGAAAAGACAGATATTACTGAAAAGAACCTGGAATTACCTCCAAGACCAAAGACAG
AAACTACAAGTAAGAATGCTAGTGAACTTGCTAATATAACATGGAGTTCGAGTGAAAGCAATTT
CTCAGATGAAGATAAGACACTCCCTGAATTACAAAGAGACAGTGGGCCTGGCCCTAGAGCCGAC
AGGCCTGGTGACAGCATTGTCTTATGTCCAGAAGACAGTGAAGATGAATTACATGTTATTGACT
GGGAGATTAACAGTGACACAGAAGATCCTGGTGGGCCTAGTGAGTGTGAAGATGATGAGGGAGC
CCTGGACATTTCAGACTGTGCTTCTTTTGCAAGTGGTCATTCTCTGACAAGTGATGACAGCCTA
CCTGAGCCCCCTGAGCAAATTTCTACAGAAATTTTGGAGTATTCATCAGATAGTGAAAGAGAAG
ATGACTCAGAGCATGCCCTGTTCATTGATTCAGAATCGCCTCACAAATACCAGGTGGAATTTAA
ATCAGATGTAAGACAGTTTTTGGATAATCAGACTGACTCAGGAGCAAATTCAGCTGAGCCCACA
TTGAAAACACCCCATAAATATACGGCCAAGTTTTCAAAGACTCCAGAAAATTCAACAACAAAGA
AGAAGTTTTTAAGAGGTCGACTAGCAGAACGACTCCAAGAACTACAGAATCGAGAGAGATCTGC
CATTTCATTGTGGAGACATCGATGTGTTGCTTACCAAATGACACCATTAGGCAGAAAATCTGGT
GTATTAACTGTGAAAATTCTAGAACTACATGAAGAATGCACCATGCAAGTTGCAGTATGTGAGC
AGTTAGCAGGGCCGCCAATCACCAGCGCTCCTAGAGGAACAGCTACTAGACCTGGAGCCTACCT
GAAGGTTCTCTTTACCAGAGAAACTGCAAATCACTTAATGGGGCAGCCCCAGGACATCATTTAC
ATCTTCCCTCCTTGGCAAAAACTTCTTATCCCAAATGGAAGTTTCTCTATTATTCTAAATACTT
ATTTTTGTCAGAAAGCTATTGCAAAAGAAACAGTGCATGAAGACCTGTACAGTCAGGACACATC
TCTTCCAAGGAGAAATATAACTTTGGCCCAGAGGTTTAGAATCAAGGGCATAACAAACAGTTCA
TCCAGCAGCCAGACTGGATATGATACCCTGGCCACCACTGGCACAGACTGGACCCACGGACATG
ACAAGGCAGAGCAACATCTTATCGTTGGTGCTCCCCTGAGGGATTCTCTTCTGGACATTGTGGA
AAGCCAAAGAGCTGGCCCATGGTCTGGGGTCAGGGTCCGAGTAGTAGTGCAGAGAGTTTACTCT
CTTCTCAGCAGAGATGGTGCCAGGAGCCAACACAGGCTCACAGGGGAGCATGCAGGATCACCTG
GAGCATGGTCCTGCCTTCTAGTGCAGGATGCCTGTGGGATGTTCGGGGAAGTGTACTTGAACAG
CACCCTCTGGAAGGACAGACAGTTAGAAGGGAGGTCCTGCAGCATGTCGGGAGTGAAGGTTCTA
CAGAAAGCTACAAGAGGAAGGACACCAGGGCTCTTCAGTTTAATTGACAGTCTGTGGCCCCCAG
TGATACCTCTGAACAAGCCTTCCTGTGACGAGCCCAGTGGAGAGACAAAGACTTATCTGCCTCC
TCCTGTCTTCTGTTATATCTTCTCTGCACATCCAAATCTGGAACAAATTGATGCAATTGAAGGA
GACACCATTTCCAAGCTTTACAAGCCTCCAGTTGTCCACTGTTTAAAAGAAATCCTCCAGACTA
ATGAACATGGTACACGTTGCAGCTTCTATGCCAGAGTGATTTATCAAAAGCCACAGCTAAAGAA
TCTTTTGGCACAAAAGGAAATCTGGCTGGTGGTGACTGACATTACCCTACAAATACAAGATGAA
AGGGACCACTCTCTTCCCAAAACCCTGCCAGTCTATATAGCCCCCTCATGTGTGCTGGGCCCAG
AGGTTGTAGAAGAACTTGCCAGGCCGGCATCTCACACCTTACTTTTCAGGGATACTCTTCGAGA
CAATGGTCAGATTGTTTGTATTGAACGGACAGTCCTCATACCCCAGAAACTTCTCTTGTGTGTA
CCTTCTTCCTGTGACTTGCCTGGCCCAGTGACAGTAGATGAACTAAGCCTCCTCACACCTGTCA
ACTCCATTTGCAGTGTGCAAGGTACCGTGGTTGATATAGATGAGAGCACTGCTTTCTCATGGCC
TGTGTGTGACCAGTGTGGCAATGGGAGATTGGAACAGAAGCCAGAAGATGGAGGCTCCTTCTCC
TGTGGGGACTGTTCCCAACTGGTCCTGTCACCTCTTCAAAAGAGACAGCTGCATGTCTTTCTGG
ACTGCCCCACAAGACCTGAGAGTACTGTGAAGGTCAAGCTGTTGGAGAGCAGTATTTCTTTACT
TCTGATGTCCGCTGCTTTCAAGGATGGGAATTATGAAGTAGAGAACATCCTTGGGAAGGAGATG
GGACCGTTACTCTGCTTTGTCCAGTCCGTCACTACACAGCAGACCAGCTGCATCACTCTGGAAG
AGATTGAGCTTCTGAGTACAGCGGGAGCCACTGCTGCTCCGCCTCCTCCTCCCTGACATCTGCG
CCCTTGGCAGTGAGGCCAGGGACTTGATCTGGGGAATCCGAATCGGGTTAACTCTGTAGTGTTT
TTATAGTTTTAAGTTTAGTGCGTTTCTTTTCTTTCCTTTTTTTTTTTTTCTGGTAAAGAGGATA
TTTTGTAAATTAAAATTCAAAATACCTCTGTTCGATCTTTTTTTCTACTTTACCTTCCTACAAA
TTTGAGGACATTTCTTTGAGTGTTTCTCCTGTCTTCTTTGTCTTCATTTTGTGCTGCTTAGGCA
TTGTTATTGATCTATTAGGAAATGTGCTTTGTTGTAGTTTAAACTGTTTACAATTAGCAATATG
TATGTGGTTTTCTTTGCAGTATTTAATATTCTCTGTAAGACTATTCTGTAAAGCTTCAACCAAT
ATCTCATGTTGAGATATTACTGTTCTGTTAACAATAAATAAATGTCCAACA

hide sequence

RefSeq Acc Id:

XM_017598050 ⟹ XP_017453539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI
Rnor_6.0	11	89,009,934 - 89,260,361 (-)	NCBI

Sequence:

show sequence

CGGAGGGAGGGAATGGCTTCCGGAAGGGGCTGAGAGTGAGAGGGGCGGACGGTGCTTGTTAAAC
ATGTCTGGAACCCGCCGCCCCGGCGTGTCCAAGAGGAAAAGGAGTTGGTGTATAGAACACCCAT
TTTTTCTAGAAGAGAGGTCACAGCAGTTGAGAAGGGCAAATTTCAAGACAGTGAAAGCAACTGA
CTCTCTCTCTAAAGCATGGCTCAAGTGTGGAGAAGGATTTCAGGACACCTCTGAGACCCTGCCA
TTAGCAAGCGAAAAGACAGATATTACTGAAAAGAACCTGGAATTACCTCCAAGACCAAAGACAG
AAACTACAAGTAAGAATGCTAGTGAACTTGCTAATATAACATGGAGTTCGAGTGAAAGCAATTT
CTCAGATGAAGATAAGACACTCCCTGAATTACAAAGAGACAGTGGGCCTGGCCCTAGAGCCGAC
AGGCCTGGTGACAGCATTGTCTTATGTCCAGAAGACAGTGAAGATGAATTACATGTTATTGACT
GGGAGATTAACAGTGACACAGAAGATCCTGGTGGGCCTAGTGAGTGTGAAGATGATGAGGGAGC
CCTGGACATTTCAGACTGTGCTTCTTTTGCAAGTGGTCATTCTCTGACAAGTGATGACAGCCTA
CCTGAGCCCCCTGAGCAAATTTCTACAGAAATTTTGGAGTATTCATCAGATAGTGAAAGAGAAG
ATGACTCAGAGCATGCCCTGTTCATTGATTCAGAATCGCCTCACAAATACCAGGTGGAATTTAA
ATCAGATGTAAGACAGTTTTTGGATAATCAGACTGACTCAGGAGCAAATTCAGCTGAGCCCACA
TTGAAAACACCCCATAAATATACGGCCAAGTTTTCAAAGACTCCAGAAAATTCAACAACAAAGA
AGAAGTTTTTAAGAGGTCGACTAGCAGAACGACTCCAAGAACTACAGAATCGAGAGAGATCTGC
CATTTCATTGTGGAGACATCGATGTGTTGCTTACCAAATGACACCATTAGGCAGAAAATCTGGT
GTATTAACTGTGAAAATTCTAGAACTACATGAAGAATGCACCATGCAAGTTGCAGTATGTGAGC
AGTTAGCAGGGCCGCCAATCACCAGCGCTCCTAGAGGAACAGCTACTAGACCTGGAGCCTACCT
GAAGGTTCTCTTTACCAGAGAAACTGCAAATCACTTAATGGGGCAGCCCCAGGACATCATTTAC
ATCTTCCCTCCTTGGCAAAAACTTCTTATCCCAAATGGAAGTTTCTCTATTATTCTAAATACTT
ATTTTTGTCAGAAAGCTATTGCAAAAGAAACAGTGCATGAAGACCTGTACAGTCAGGACACATC
TCTTCCAAGGAGAAATATAACTTTGGCCCAGAGGTTTAGAATCAAGGGCATAACAAACAGTTCA
TCCAGCAGCCAGACTGGATATGATACCCTGGCCACCACTGGCACAGACTGGACCCACGGACATG
ACAAGGCAGAGCAACATCTTATCGTTGGTGCTCCCCTGAGGGATTCTCTTCTGGACATTGTGGA
AAGCCAAAGAGCTGGCCCATGGTCTGGGGTCAGGGTCCGAGTAGTAGTGCAGAGAGTTTACTCT
CTTCTCAGCAGAGATGGTGCCAGGAGCCAACACAGGCTCACAGGGGAGCATGCAGGATCACCTG
GAGCATGGTCCTGCCTTCTAGTGCAGGATGCCTGTGGGATGTTCGGGGAAGTGTACTTGAACAG
CACCCTCTGGAAGGACAGACAGTTAGAAGGGAGGTCCTGCAGCATGTCGGGAGTGAAGGTTCTA
CAGAAAGCTACAAGAGGAAGTGTCTCTTGTTCCAGGACACCAGGGCTCTTCAGTTTAATTGACA
GTCTGTGGCCCCCAGTGATACCTCTGAACAAGCCTTCCTGTGACGAGCCCAGTGGAGAGACAAA
GACTTATCTGCCTCCTCCTGTCTTCTGTTATATCTTCTCTGCACATCCAAATCTGGAACAAATT
GATGCAATTGAAGGAGACACCATTTCCAAGCTTTACAAGCCTCCAGTTGTCCACTGTTTAAAAG
AAATCCTCCAGACTAATGAACATGGTACACGTTGCAGCTTCTATGCCAGAGTGATTTATCAAAA
GCCACAGCTAAAGAATCTTTTGGCACAAAAGGAAATCTGGCTGGTGGTGACTGACATTACCCTA
CAAATACAAGATGAAAGGGACCACTCTCTTCCCAAAACCCTGCCAGTCTATATAGCCCCCTCAT
GTGTGCTGGGCCCAGAGGTTGTAGAAGAACTTGCCAGGCCGGCATCTCACACCTTACTTTTCAG
GGATACTCTTCGAGACAATGGTCAGATTGTTTGTATTGAACGGACAGTCCTCATACCCCAGAAA
CTTCTCTTGTGTGTACCTTCTTCCTGTGACTTGCCTGGCCCAGTGACAGTAGATGAACTAAGCC
TCCTCACACCTGTCAACTCCATTTGCAGTGTGCAAGGTACCGTGGTTGATATAGATGAGAGCAC
TGCTTTCTCATGGCCTGTGTGTGACCAGTGTGGCAATGGGAGATTGGAACAGAAGCCAGAAGAT
GGAGGCTCCTTCTCCTGTGGGGACTGTTCCCAACTGGTCCTGTCACCTCTTCAAAAGAGACAGC
TGCATGTCTTTCTGGACTGCCCCACAAGACCTGAGAGTACTGTGAAGGTCAAGCTGTTGGAGAG
CAGTATTTCTTTACTTCTGATGTCCGCTGCTTTCAAGGATGGGAATTATGAAGTAGAGAACATC
CTTGGGAAGGAGATGGGACCGTTACTCTGCTTTGTCCAGTCCGTCACTACACAGCAGACCAGCT
GCATCACTCTGGAAGAGATTGAGCTTCTGAGTACAGCGGGAGCCACTGCTGCTCCGCCTCCTCC
TCCCTGACATCTGCGCCCTTGGCAGTGAGGCCAGGGACTTGATCTGGGGAATCCGAATCGGGTT
AACTCTGTAGTGTTTTTATAGTTTTAAGTTTAGTGCGTTTCTTTTCTTTCCTTTTTTTTTTTTT
CTGGTAAAGAGGATATTTTGTAAATTAAAATTCAAAATACCTCTGTTCGATCTTTTTTTCTACT
TTACCTTCCTACAAATTTGAGGACATTTCTTTGAGTGTTTCTCCTGTCTTCTTTGTCTTCATTT
TGTGCTGCTTAGGCATTGTTATTGATCTATTAGGAAATGTGCTTTGTTGTAGTTTAAACTGTTT
ACAATTAGCAATATGTATGTGGTTTTCTTTGCAGTATTTAATATTCTCTGTAAGACTATTCTGT
AAAGCTTCAACCAATATCTCATGTTGAGATATTACTGTTCTGTTAACAATAAATAAATGTCCAA
CA

hide sequence

RefSeq Acc Id:

XM_039088589 ⟹ XP_038944517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,760 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088590 ⟹ XP_038944518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088591 ⟹ XP_038944519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088592 ⟹ XP_038944520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,771,453 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088593 ⟹ XP_038944521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088594 ⟹ XP_038944522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088595 ⟹ XP_038944523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,766,596 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088597 ⟹ XP_038944525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,312,557 - 98,511,756 (-)	NCBI
mRatBN7.2	11	84,808,399 - 85,007,597 (-)	NCBI

RefSeq Acc Id:

XM_039088598 ⟹ XP_038944526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,354,847 (-)	NCBI
mRatBN7.2	11	84,766,596 - 84,850,670 (-)	NCBI

RefSeq Acc Id:

XM_063270715 ⟹ XP_063126785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,756 (-)	NCBI

RefSeq Acc Id:

XM_063270716 ⟹ XP_063126786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,760 (-)	NCBI

RefSeq Acc Id:

XM_063270717 ⟹ XP_063126787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,535 (-)	NCBI

RefSeq Acc Id:

XM_063270718 ⟹ XP_063126788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,511,617 (-)	NCBI

RefSeq Acc Id:

XM_063270719 ⟹ XP_063126789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,481,171 (-)	NCBI

RefSeq Acc Id:

XM_063270720 ⟹ XP_063126790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	98,270,782 - 98,491,168 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094458	(Get FASTA)	NCBI Sequence Viewer
	NP_001430577	(Get FASTA)	NCBI Sequence Viewer
	NP_001430578	(Get FASTA)	NCBI Sequence Viewer
	NP_001430579	(Get FASTA)	NCBI Sequence Viewer
	NP_001430580	(Get FASTA)	NCBI Sequence Viewer
	NP_001430581	(Get FASTA)	NCBI Sequence Viewer
	NP_001430582	(Get FASTA)	NCBI Sequence Viewer
	XP_008767120	(Get FASTA)	NCBI Sequence Viewer
	XP_017453539	(Get FASTA)	NCBI Sequence Viewer
	XP_038944517	(Get FASTA)	NCBI Sequence Viewer
	XP_038944518	(Get FASTA)	NCBI Sequence Viewer
	XP_038944519	(Get FASTA)	NCBI Sequence Viewer
	XP_038944520	(Get FASTA)	NCBI Sequence Viewer
	XP_038944521	(Get FASTA)	NCBI Sequence Viewer
	XP_038944522	(Get FASTA)	NCBI Sequence Viewer
	XP_038944523	(Get FASTA)	NCBI Sequence Viewer
	XP_038944525	(Get FASTA)	NCBI Sequence Viewer
	XP_038944526	(Get FASTA)	NCBI Sequence Viewer
	XP_063126785	(Get FASTA)	NCBI Sequence Viewer
	XP_063126786	(Get FASTA)	NCBI Sequence Viewer
	XP_063126787	(Get FASTA)	NCBI Sequence Viewer
	XP_063126788	(Get FASTA)	NCBI Sequence Viewer
	XP_063126789	(Get FASTA)	NCBI Sequence Viewer
	XP_063126790	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI29121	(Get FASTA)	NCBI Sequence Viewer
	EDL77844	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054310
	ENSRNOP00000054310.3
	ENSRNOP00000071950
	ENSRNOP00000071950.3
	ENSRNOP00000078167
	ENSRNOP00000078167.2
	ENSRNOP00000101694
	ENSRNOP00000101694.1

RefSeq Acc Id:

NP_001094458 ⟸ NM_001100988

- UniProtKB:

A2VD15 (UniProtKB/TrEMBL), E9PSZ4 (UniProtKB/TrEMBL), A0A0G2K1R3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGTRRPGVSKRKRSWCIEHPFFLEERSQQLRRANFKTVKATDSLSKAWLKCGEGFQDTSETLP
LASEKTDITEKNLELPPRPKTDELHVIDWEINSDTEDPGGPSECEDDEGALDISDCASFASGHS
LTSDDSLPEPPEQISTEILEYSSDSEREDDSEHALFIDSESPHKYQVEFKSDVRQFLDNQTDSG
ANSAEPTLKTPHKYTAKFSKTPENSTTKKKFLRGRLAERLQELQNRERSAISLWRHRCVAYQMT
PLGRKSGVLTVKILELHEECTMQVAVCEQLAGPPITSAPRGTATRPGAYLKVLFTRETANHLMG
QPQDIIYIFPPWQKLLIPNGSFSIILNTYFCQKAIAKETVHEDLYSQDTSLPRRNITLAQRFRI
KGITNSSSSSQTGYDTLATTGTDWTHGHDKAEQHLIVGAPLRDSLLDIVESQRAGPWSGVRVRV
VVQRVYSLLSRDGARSQHRLTGEHAGSPGAWSCLLVQDACGMFGEVYLNSTLWKDRQLEGRSCS
MSGVKVLQKATRGRTPGLFSLIDSLWPPVIPLNKPSCDEPSGETKTYLPPPVFCYIFSAHPNLE
QIDAIEGDTISKLYKPPVVHCLKEILQTNEHGTRCSFYARVIYQKPQLKNLLAQKEIWLVVTDI
TLQIQDERDHSLPKTLPVYIAPSCVLGPEVVEELARPASHTLLFRDTLRDNGQIVCIERTVLIP
QKLLLCVPSSCDLPGPVTVDELSLLTPVNSICSVQGTVVDIDESTAFSWPVCDQCGNGRLEQKP
EDGGSFSCGDCSQLVLSPLQKRQLHVFLDCPTRPESTVKVKLLESSISLLLMSAAFKDGNYEVE
NILGKEMGPLLCFVQSVTTQQTSCITLEEIELLSTAGATAAPPPPP

hide sequence

RefSeq Acc Id:	XP_008767120 ⟸ XM_008768898
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y2H8 (UniProtKB/TrEMBL), A0A0G2K1R3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGTRRPGVSKRKRSWCIEHPFFLEERSQQLRRANFKTVKATDSLSKAWLKCGEGFQDTSETLP LASEKTDITEKNLELPPRPKTETTSKNASELANITWSSSESNFSDEDKTLPELQRDSGPGPRAD RPGDSIVLCPEDSEDELHVIDWEINSDTEDPGGPSECEDDEGALDISDCASFASGHSLTSDDSL PEPPEQISTEILEYSSDSEREDDSEHALFIDSESPHKYQVEFKSDVRQFLDNQTDSGANSAEPT LKTPHKYTAKFSKTPENSTTKKKFLRGRLAERLQELQNRERSAISLWRHRCVAYQMTPLGRKSG VLTVKILELHEECTMQVAVCEQLAGPPITSAPRGTATRPGAYLKVLFTRETANHLMGQPQDIIY IFPPWQKLLIPNGSFSIILNTYFCQKAIAKETVHEDLYSQDTSLPRRNITLAQRFRIKGITNSS SSSQTGYDTLATTGTDWTHGHDKAEQHLIVGAPLRDSLLDIVESQRAGPWSGVRVRVVVQRVYS LLSRDGARSQHRLTGEHAGSPGAWSCLLVQDACGMFGEVYLNSTLWKDRQLEGRSCSMSGVKVL QKATRGRTPGLFSLIDSLWPPVIPLNKPSCDEPSGETKTYLPPPVFCYIFSAHPNLEQIDAIEG DTISKLYKPPVVHCLKEILQTNEHGTRCSFYARVIYQKPQLKNLLAQKEIWLVVTDITLQIQDE RDHSLPKTLPVYIAPSCVLGPEVVEELARPASHTLLFRDTLRDNGQIVCIERTVLIPQKLLLCV PSSCDLPGPVTVDELSLLTPVNSICSVQGTVVDIDESTAFSWPVCDQCGNGRLEQKPEDGGSFS CGDCSQLVLSPLQKRQLHVFLDCPTRPESTVKVKLLESSISLLLMSAAFKDGNYEVENILGKEM GPLLCFVQSVTTQQTSCITLEEIELLSTAGATAAPPPPP hide sequence

RefSeq Acc Id:	XP_017453539 ⟸ XM_017598050
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGTRRPGVSKRKRSWCIEHPFFLEERSQQLRRANFKTVKATDSLSKAWLKCGEGFQDTSETLP LASEKTDITEKNLELPPRPKTETTSKNASELANITWSSSESNFSDEDKTLPELQRDSGPGPRAD RPGDSIVLCPEDSEDELHVIDWEINSDTEDPGGPSECEDDEGALDISDCASFASGHSLTSDDSL PEPPEQISTEILEYSSDSEREDDSEHALFIDSESPHKYQVEFKSDVRQFLDNQTDSGANSAEPT LKTPHKYTAKFSKTPENSTTKKKFLRGRLAERLQELQNRERSAISLWRHRCVAYQMTPLGRKSG VLTVKILELHEECTMQVAVCEQLAGPPITSAPRGTATRPGAYLKVLFTRETANHLMGQPQDIIY IFPPWQKLLIPNGSFSIILNTYFCQKAIAKETVHEDLYSQDTSLPRRNITLAQRFRIKGITNSS SSSQTGYDTLATTGTDWTHGHDKAEQHLIVGAPLRDSLLDIVESQRAGPWSGVRVRVVVQRVYS LLSRDGARSQHRLTGEHAGSPGAWSCLLVQDACGMFGEVYLNSTLWKDRQLEGRSCSMSGVKVL QKATRGSVSCSRTPGLFSLIDSLWPPVIPLNKPSCDEPSGETKTYLPPPVFCYIFSAHPNLEQI DAIEGDTISKLYKPPVVHCLKEILQTNEHGTRCSFYARVIYQKPQLKNLLAQKEIWLVVTDITL QIQDERDHSLPKTLPVYIAPSCVLGPEVVEELARPASHTLLFRDTLRDNGQIVCIERTVLIPQK LLLCVPSSCDLPGPVTVDELSLLTPVNSICSVQGTVVDIDESTAFSWPVCDQCGNGRLEQKPED GGSFSCGDCSQLVLSPLQKRQLHVFLDCPTRPESTVKVKLLESSISLLLMSAAFKDGNYEVENI LGKEMGPLLCFVQSVTTQQTSCITLEEIELLSTAGATAAPPPPP hide sequence

Ensembl Acc Id:

ENSRNOP00000054310 ⟸ ENSRNOT00000057502

Ensembl Acc Id:

ENSRNOP00000071950 ⟸ ENSRNOT00000089517

RefSeq Acc Id:	XP_038944523 ⟸ XM_039088595
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944522 ⟸ XM_039088594
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944521 ⟸ XM_039088593
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944518 ⟸ XM_039088590
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944519 ⟸ XM_039088591
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944517 ⟸ XM_039088589
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944526 ⟸ XM_039088598
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038944520 ⟸ XM_039088592
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944525 ⟸ XM_039088597
- Peptide Label:	isoform X14

Ensembl Acc Id:

ENSRNOP00000078167 ⟸ ENSRNOT00000111413

RefSeq Acc Id:	XP_063126786 ⟸ XM_063270716
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126785 ⟸ XM_063270715
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2K1R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126788 ⟸ XM_063270718
- Peptide Label:	isoform X12
- UniProtKB:	A6JSR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126787 ⟸ XM_063270717
- Peptide Label:	isoform X12
- UniProtKB:	A6JSR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126790 ⟸ XM_063270720
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063126789 ⟸ XM_063270719
- Peptide Label:	isoform X12
- UniProtKB:	A6JSR3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101694 ⟸ ENSRNOT00000173455

Protein Domains

DUF4502 DUF4503

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A2VD15-F1-model_v2	AlphaFold	A2VD15	1-878	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698347

Promoter ID:

EPDNEW_R8872

Type:

initiation region

Name:

Spidr_1

Description:

scaffolding protein involved in DNA repair

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	89,260,324 - 89,260,384	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566036	AgrOrtholog
BioCyc Gene	G2FUF-20544	BioCyc
Ensembl Genes	ENSRNOG00000037851	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057502	ENTREZGENE
	ENSRNOT00000057502.6	UniProtKB/TrEMBL
	ENSRNOT00000089517	ENTREZGENE
	ENSRNOT00000089517.3	UniProtKB/TrEMBL
	ENSRNOT00000111413	ENTREZGENE
	ENSRNOT00000111413.2	UniProtKB/TrEMBL
	ENSRNOT00000173455	ENTREZGENE
	ENSRNOT00000173455.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7123928	IMAGE-MGC_LOAD
InterPro	DNA_repair-scaffolding	UniProtKB/TrEMBL
	DUF4502	UniProtKB/TrEMBL
	DUF4503	UniProtKB/TrEMBL
KEGG Report	rno:498119	UniProtKB/TrEMBL
MGC_CLONE	MGC:156776	IMAGE-MGC_LOAD
NCBI Gene	498119	ENTREZGENE
PANTHER	DNA REPAIR-SCAFFOLDING PROTEIN	UniProtKB/TrEMBL
	DNA REPAIR-SCAFFOLDING PROTEIN SPIDR	UniProtKB/TrEMBL
Pfam	DUF4502	UniProtKB/TrEMBL
	DUF4503	UniProtKB/TrEMBL
PhenoGen	Spidr	PhenoGen
RatGTEx	ENSRNOG00000037851	RatGTEx
UniProt	A0A0G2K1R3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y2H8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJX8_RAT	UniProtKB/TrEMBL
	A2VD15	ENTREZGENE, UniProtKB/TrEMBL
	A6JSR3	ENTREZGENE, UniProtKB/TrEMBL
	E9PSZ4	ENTREZGENE
UniProt Secondary	E9PSZ4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-03-16	Spidr	scaffold protein involved in DNA repair	Spidr	scaffolding protein involved in DNA repair	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-07	Spidr	scaffolding protein involved in DNA repair	RGD1566036	similar to RIKEN cDNA 2310008H04	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1566036	similar to RIKEN cDNA 2310008H04	RGD1566036_predicted	similar to RIKEN cDNA 2310008H04 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1566036_predicted	similar to RIKEN cDNA 2310008H04 (predicted)	LOC498119	similar to RIKEN cDNA 2310008H04	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498119	similar to RIKEN cDNA 2310008H04			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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