Ulk4 (unc-51 like kinase 4) - Rat Genome Database

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Gene: Ulk4 (unc-51 like kinase 4) Rattus norvegicus
Analyze
Symbol: Ulk4
Name: unc-51 like kinase 4
RGD ID: 1565726
Description: Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within several processes, including cilium organization; nervous system development; and regulation of MAPK cascade. Predicted to be located in extracellular region. Predicted to be active in cilium. Orthologous to human ULK4 (unc-51 like kinase 4); INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363167; RGD1565726; serine/threonine-protein kinase ULK4; similar to hypothetical protein A730098P15; unc-51-like kinase 4; unc-51-like kinase 4 (C. elegans)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Ulk4em3Mcwi
Genetic Models: SS-Ulk4em3Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,548,431 - 129,843,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8129,548,431 - 129,843,501 (-)EnsemblGRCr8
mRatBN7.28120,670,879 - 120,966,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)EnsemblmRatBN7.2
Rnor_6.08129,631,003 - 129,919,080 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)Ensemblrn6Rnor6.0
Rnor_5.08128,829,597 - 129,125,286 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48125,992,455 - 126,284,263 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8119,808,966 - 120,095,020 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:21746835   PMID:24284070   PMID:27300315   PMID:27445138   PMID:29034508   PMID:29391390  


Genomics

Comparative Map Data
Ulk4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,548,431 - 129,843,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8129,548,431 - 129,843,501 (-)EnsemblGRCr8
mRatBN7.28120,670,879 - 120,966,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)EnsemblmRatBN7.2
Rnor_6.08129,631,003 - 129,919,080 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)Ensemblrn6Rnor6.0
Rnor_5.08128,829,597 - 129,125,286 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48125,992,455 - 126,284,263 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8119,808,966 - 120,095,020 (-)NCBICelera
Cytogenetic Map8q32NCBI
ULK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38341,246,599 - 41,962,103 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl341,246,599 - 41,962,130 (-)Ensemblhg38GRCh38
GRCh37341,288,090 - 42,003,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36341,263,094 - 41,978,664 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34341,978,515 - 41,978,574NCBI
Celera341,226,416 - 41,942,816 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef341,333,321 - 42,047,163 (-)NCBIHuRef
CHM1_1341,238,652 - 41,954,787 (-)NCBICHM1_1
T2T-CHM13v2.0341,255,217 - 41,980,057 (-)NCBIT2T-CHM13v2.0
Ulk4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,793,520 - 121,115,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,784,417 - 121,106,263 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389120,964,454 - 121,286,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,955,351 - 121,277,197 (-)Ensemblmm10GRCm38
MGSCv379120,873,572 - 121,186,290 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369120,982,789 - 121,186,592 (-)NCBIMGSCv36mm8
Celera9121,435,446 - 121,746,505 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.19NCBI
Ulk4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,633,726 - 29,028,025 (+)Ensembl
ChiLan1.0NW_00495542028,633,011 - 29,031,161 (+)NCBIChiLan1.0ChiLan1.0
ULK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2241,201,181 - 41,922,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,205,941 - 41,927,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,152,261 - 41,864,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1341,420,162 - 42,129,218 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl341,568,907 - 42,121,959 (-)EnsemblpanPan2panpan1.1
ULK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12310,578,391 - 11,176,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2310,578,429 - 11,176,545 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2310,614,934 - 11,212,666 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02310,865,767 - 11,464,428 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2310,865,770 - 11,464,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12310,675,524 - 11,266,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,817,061 - 11,408,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,809,035 - 11,412,354 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ulk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,896,010 - 197,397,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647330,038,164 - 30,536,567 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647330,034,159 - 30,536,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ULK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,209,368 - 25,751,500 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,071,886 - 28,220,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ULK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,731,174 - 3,398,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,731,308 - 3,398,912 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041163,794,109 - 164,464,458 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ulk4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,495,747 - 77,875,622 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473077,495,705 - 77,876,547 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ulk4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18112,170,902 - 112,458,718 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:471
Count of miRNA genes:214
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000026073, ENSRNOT00000055871, ENSRNOT00000064688, ENSRNOT00000065691, ENSRNOT00000066757, ENSRNOT00000074423
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Genetic Models
This gene Ulk4 is modified in the following models/strains:
SS-Ulk4em3Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 160 86 85 54 90 54 6 347 189 11 139 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000074423   ⟹   ENSRNOP00000064927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8129,548,431 - 129,843,501 (-)Ensembl
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)Ensembl
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105018   ⟹   ENSRNOP00000093541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,779,402 - 120,966,924 (-)Ensembl
RefSeq Acc Id: NM_001427712   ⟹   NP_001414641
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,501 (-)NCBI
RefSeq Acc Id: XM_039082731   ⟹   XP_038938659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,554 (-)NCBI
mRatBN7.28120,670,879 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082732   ⟹   XP_038938660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,525 (-)NCBI
mRatBN7.28120,670,879 - 120,965,969 (-)NCBI
RefSeq Acc Id: XM_039082734   ⟹   XP_038938662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,554 (-)NCBI
mRatBN7.28120,670,879 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082736   ⟹   XP_038938664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,756,764 - 129,843,555 (-)NCBI
mRatBN7.28120,878,896 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082737   ⟹   XP_038938665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,796,513 (-)NCBI
mRatBN7.28120,670,879 - 120,918,988 (-)NCBI
RefSeq Acc Id: XM_063265849   ⟹   XP_063121919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,528 (-)NCBI
RefSeq Acc Id: XM_063265850   ⟹   XP_063121920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,536 (-)NCBI
RefSeq Acc Id: XM_063265851   ⟹   XP_063121921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,835,719 (-)NCBI
Ensembl Acc Id: ENSRNOP00000064927   ⟸   ENSRNOT00000074423
RefSeq Acc Id: XP_038938662   ⟸   XM_039082734
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938659   ⟸   XM_039082731
- Peptide Label: isoform X1
- UniProtKB: M0R685 (UniProtKB/TrEMBL),   A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938660   ⟸   XM_039082732
- Peptide Label: isoform X1
- UniProtKB: M0R685 (UniProtKB/TrEMBL),   A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938665   ⟸   XM_039082737
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938664   ⟸   XM_039082736
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000093541   ⟸   ENSRNOT00000105018
RefSeq Acc Id: XP_063121920   ⟸   XM_063265850
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121919   ⟸   XM_063265849
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414641   ⟸   NM_001427712
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121921   ⟸   XM_063265851
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R685-F1-model_v2 AlphaFold M0R685 1-1101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565726 AgrOrtholog
BioCyc Gene G2FUF-28710 BioCyc
Ensembl Genes ENSRNOG00000019271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074423 ENTREZGENE
  ENSRNOT00000074423.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT_ULK4_RUNKEL UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  ULK4 UniProtKB/TrEMBL
NCBI Gene 363167 ENTREZGENE
PANTHER PTHR46240 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE ULK4 UniProtKB/TrEMBL
Pfam HEAT_ULK4 UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PhenoGen Ulk4 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019271 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Kinase_like UniProtKB/TrEMBL
UniProt A0A8I6AHS6 ENTREZGENE
  M0R685 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Ulk4  unc-51-like kinase 4 (C. elegans)  RGD1565726  similar to hypothetical protein A730098P15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565726  similar to hypothetical protein A730098P15   RGD1565726_predicted  similar to hypothetical protein A730098P15 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565726_predicted  similar to hypothetical protein A730098P15 (predicted)  LOC363167  similar to hypothetical protein A730098P15  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363167  similar to hypothetical protein A730098P15      Symbol and Name status set to provisional 70820 PROVISIONAL