Coprs (coordinator of PRMT5 and differentiation stimulator) - Rat Genome Database

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Gene: Coprs (coordinator of PRMT5 and differentiation stimulator) Rattus norvegicus
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Symbol: Coprs
Name: coordinator of PRMT5 and differentiation stimulator
RGD ID: 1565675
Description: Predicted to enable histone binding activity. Predicted to be involved in chromatin remodeling and muscle organ development. Predicted to act upstream of or within blastocyst hatching. Predicted to be active in nucleus. Orthologous to human COPRS (coordinator of PRMT5 and differentiation stimulator); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cooperator of PRMT5; coordinator of PRMT5, differentiation stimulator; Copr5; LOC290925; RGD1565675; similar to RIKEN cDNA 2410022L05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,423,426 - 82,428,821 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1682,407,580 - 82,431,737 (+)EnsemblGRCr8
mRatBN7.21675,721,264 - 75,726,375 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1675,720,061 - 75,726,375 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,001,741 - 81,006,842 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,455,271 - 84,460,372 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01679,705,058 - 79,710,142 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01680,826,681 - 80,831,791 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1680,826,681 - 80,831,791 (+)Ensemblrn6Rnor6.0
Rnor_5.01680,390,902 - 80,396,012 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41680,557,030 - 80,562,140 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1673,530,152 - 73,535,262 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function
histone binding  (IBA,IEA,ISO)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18404153   PMID:22193545   PMID:27869233  


Genomics

Comparative Map Data
Coprs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,423,426 - 82,428,821 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1682,407,580 - 82,431,737 (+)EnsemblGRCr8
mRatBN7.21675,721,264 - 75,726,375 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1675,720,061 - 75,726,375 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,001,741 - 81,006,842 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,455,271 - 84,460,372 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01679,705,058 - 79,710,142 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01680,826,681 - 80,831,791 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1680,826,681 - 80,831,791 (+)Ensemblrn6Rnor6.0
Rnor_5.01680,390,902 - 80,396,012 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41680,557,030 - 80,562,140 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1673,530,152 - 73,535,262 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
COPRS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381731,851,871 - 31,859,244 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1731,851,871 - 31,859,291 (-)Ensemblhg38GRCh38
GRCh371730,178,890 - 30,186,263 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,203,009 - 27,210,369 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1727,098,524 - 27,105,966 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1726,389,213 - 26,396,656 (-)NCBIHuRef
CHM1_11730,241,346 - 30,248,795 (-)NCBICHM1_1
T2T-CHM13v2.01732,797,708 - 32,805,083 (-)NCBIT2T-CHM13v2.0
Coprs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,934,787 - 13,940,501 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,934,794 - 13,940,281 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38813,884,787 - 13,890,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,884,794 - 13,890,281 (-)Ensemblmm10GRCm38
MGSCv37813,884,788 - 13,890,271 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36813,884,772 - 13,890,247 (-)NCBIMGSCv36mm8
Celera814,045,092 - 14,050,575 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map86.41NCBI
Coprs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554816,787,135 - 6,800,696 (-)Ensembl
ChiLan1.0NW_0049554816,794,088 - 6,797,723 (-)NCBIChiLan1.0ChiLan1.0
COPRS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21932,614,253 - 32,621,661 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11734,493,134 - 34,500,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01724,931,356 - 24,938,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11725,669,899 - 25,676,859 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1725,669,899 - 25,676,859 (+)EnsemblpanPan2panpan1.1
COPRS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1941,098,226 - 41,104,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl941,102,541 - 41,103,994 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha940,256,947 - 40,263,241 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0941,916,297 - 41,922,540 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,916,381 - 41,922,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,700,384 - 40,706,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,994,614 - 41,000,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0941,070,836 - 41,077,080 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
COPRS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,091,176 - 43,097,994 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11243,091,181 - 43,097,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,879,988 - 44,886,782 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPRS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,327,180 - 25,334,493 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,327,134 - 25,334,413 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660754,743,159 - 4,750,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coprs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248754,345,599 - 4,352,081 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248754,345,593 - 4,352,097 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Coprs
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11369,886,331 - 69,891,827 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Coprs
67 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:113
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000000123
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat

Markers in Region
RH134484  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81682,428,557 - 82,428,771 (+)Marker Load Pipeline
mRatBN7.21675,726,342 - 75,726,556 (+)MAPPERmRatBN7.2
mRatBN7.2X54,518,702 - 54,518,961 (+)MAPPERmRatBN7.2
Rnor_6.01680,831,759 - 80,831,972NCBIRnor6.0
Rnor_6.0X58,594,603 - 58,594,861NCBIRnor6.0
Rnor_5.0X59,380,971 - 59,381,229UniSTSRnor5.0
Rnor_5.01680,395,980 - 80,396,193UniSTSRnor5.0
RGSC_v3.4X77,040,681 - 77,040,939UniSTSRGSC3.4
RGSC_v3.41680,562,108 - 80,562,321UniSTSRGSC3.4
Celera1673,535,230 - 73,535,443UniSTS
CeleraX55,032,588 - 55,032,846UniSTS
Cytogenetic Map16q12.5UniSTS
RH124841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21675,726,350 - 75,726,501 (+)MAPPERmRatBN7.2
Rnor_6.01680,831,767 - 80,831,917NCBIRnor6.0
Rnor_5.01680,395,988 - 80,396,138UniSTSRnor5.0
RGSC_v3.41680,562,116 - 80,562,266UniSTSRGSC3.4
Celera1673,535,238 - 73,535,388UniSTS
Cytogenetic Map16q12.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000123   ⟹   ENSRNOP00000000123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,423,467 - 82,428,820 (+)Ensembl
mRatBN7.2 Ensembl1675,721,264 - 75,726,375 (+)Ensembl
Rnor_6.0 Ensembl1680,826,681 - 80,831,791 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095879   ⟹   ENSRNOP00000085951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,422,235 - 82,428,820 (+)Ensembl
mRatBN7.2 Ensembl1675,720,061 - 75,726,375 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098298   ⟹   ENSRNOP00000089318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,424,037 - 82,428,820 (+)Ensembl
mRatBN7.2 Ensembl1675,721,553 - 75,726,375 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000124003   ⟹   ENSRNOP00000099268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,422,985 - 82,428,820 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157866   ⟹   ENSRNOP00000107632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,407,580 - 82,428,820 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000160184   ⟹   ENSRNOP00000111771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,423,467 - 82,431,737 (+)Ensembl
RefSeq Acc Id: NM_001169121   ⟹   NP_001162592
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,423,480 - 82,428,590 (+)NCBI
mRatBN7.21675,721,264 - 75,726,375 (+)NCBI
Rnor_6.01680,826,681 - 80,831,791 (+)NCBI
Rnor_5.01680,390,902 - 80,396,012 (+)NCBI
RGSC_v3.41680,557,030 - 80,562,140 (+)RGD
Celera1673,530,152 - 73,535,262 (+)RGD
Sequence:
RefSeq Acc Id: XM_063275264   ⟹   XP_063131334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,423,426 - 82,428,821 (+)NCBI
RefSeq Acc Id: NP_001162592   ⟸   NM_001169121
- UniProtKB: A6IWF3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000123   ⟸   ENSRNOT00000000123
Ensembl Acc Id: ENSRNOP00000085951   ⟸   ENSRNOT00000095879
Ensembl Acc Id: ENSRNOP00000089318   ⟸   ENSRNOT00000098298
RefSeq Acc Id: XP_063131334   ⟸   XM_063275264
- Peptide Label: isoform X1
- UniProtKB: A6IWF4 (UniProtKB/TrEMBL),   D3ZB92 (UniProtKB/TrEMBL),   A6IWF3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099268   ⟸   ENSRNOT00000124003
Ensembl Acc Id: ENSRNOP00000107632   ⟸   ENSRNOT00000157866
Ensembl Acc Id: ENSRNOP00000111771   ⟸   ENSRNOT00000160184

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZB92-F1-model_v2 AlphaFold D3ZB92 1-173 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700222
Promoter ID:EPDNEW_R10746
Type:initiation region
Name:Coprs_1
Description:coordinator of PRMT5 and differentiation stimulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01680,826,693 - 80,826,753EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565675 AgrOrtholog
BioCyc Gene G2FUF-10738 BioCyc
Ensembl Genes ENSRNOG00000000111 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000123 ENTREZGENE
  ENSRNOT00000000123.7 UniProtKB/TrEMBL
  ENSRNOT00000095879.2 UniProtKB/TrEMBL
  ENSRNOT00000098298.2 UniProtKB/TrEMBL
  ENSRNOT00000124003.1 UniProtKB/TrEMBL
  ENSRNOT00000157866.1 UniProtKB/TrEMBL
  ENSRNOT00000160184.1 UniProtKB/TrEMBL
InterPro COPR5 UniProtKB/TrEMBL
NCBI Gene 290925 ENTREZGENE
PANTHER COORDINATOR OF PRMT5 AND DIFFERENTIATION STIMULATOR UniProtKB/TrEMBL
  PTHR36461 UniProtKB/TrEMBL
Pfam COPR5 UniProtKB/TrEMBL
PhenoGen Coprs PhenoGen
RatGTEx ENSRNOG00000000111 RatGTEx
UniProt A0A8I6A2L9_RAT UniProtKB/TrEMBL
  A0A8I6ACF2_RAT UniProtKB/TrEMBL
  A0ABK0L8L8_RAT UniProtKB/TrEMBL
  A0ABK0LTZ0_RAT UniProtKB/TrEMBL
  A0ABK0LZ84_RAT UniProtKB/TrEMBL
  A6IWF3 ENTREZGENE, UniProtKB/TrEMBL
  A6IWF4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB92 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-20 Coprs  coordinator of PRMT5 and differentiation stimulator  Coprs  coordinator of PRMT5, differentiation stimulator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-11-21 Coprs  coordinator of PRMT5, differentiation stimulator  RGD1565675  similar to RIKEN cDNA 2410022L05  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565675  similar to RIKEN cDNA 2410022L05   RGD1565675_predicted  similar to RIKEN cDNA 2410022L05 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565675_predicted  similar to RIKEN cDNA 2410022L05 (predicted)  LOC290925  similar to RIKEN cDNA 2410022L05  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC290925  similar to RIKEN cDNA 2410022L05      Symbol and Name status set to provisional 70820 PROVISIONAL