Cwc22 (CWC22 spliceosome associated protein) - Rat Genome Database

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Gene: Cwc22 (CWC22 spliceosome associated protein) Rattus norvegicus
Analyze
Symbol: Cwc22 (Ensembl: LOC134479418)
Name: CWC22 spliceosome associated protein (Ensembl:pre-mRNA-splicing factor CWC22 homolog)
RGD ID: 1565385
Description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome; U2-type catalytic step 2 spliceosome; and U2-type precatalytic spliceosome. Orthologous to human CWC22 (CWC22 spliceosome associated protein homolog); INTERACTS WITH 3-chloropropane-1,2-diol; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CWC22 homolog, spliceosome-associated protein; CWC22 spliceosome associated protein homolog; CWC22 spliceosome-associated protein; CWC22 spliceosome-associated protein homolog; CWC22 spliceosome-associated protein homolog (S. cerevisiae); LOC362153; pre-mRNA-splicing factor CWC22 homolog; RGD1565385; similar to mKIAA1604 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cwc22-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8383,222,400 - 83,271,427 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl383,209,194 - 83,271,513 (-)EnsemblGRCr8
mRatBN7.2362,815,230 - 62,864,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,802,045 - 62,864,228 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx366,163,694 - 66,212,505 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,747,356 - 74,796,169 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0372,514,819 - 72,563,630 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,731,145 - 64,780,127 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,731,381 - 64,766,472 (-)Ensemblrn6Rnor6.0
Rnor_5.0371,298,090 - 71,346,831 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4360,560,959 - 60,600,491 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera362,293,622 - 62,342,514 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
protein binding  (ISO)
RNA binding  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11991638   PMID:22961380   PMID:28076346   PMID:29301961   PMID:29360106  


Genomics

Comparative Map Data
Cwc22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8383,222,400 - 83,271,427 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl383,209,194 - 83,271,513 (-)EnsemblGRCr8
mRatBN7.2362,815,230 - 62,864,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,802,045 - 62,864,228 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx366,163,694 - 66,212,505 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,747,356 - 74,796,169 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0372,514,819 - 72,563,630 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,731,145 - 64,780,127 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,731,381 - 64,766,472 (-)Ensemblrn6Rnor6.0
Rnor_5.0371,298,090 - 71,346,831 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4360,560,959 - 60,600,491 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera362,293,622 - 62,342,514 (-)NCBICelera
Cytogenetic Map3q24NCBI
CWC22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382179,944,876 - 180,007,297 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2179,944,872 - 180,007,297 (-)Ensemblhg38GRCh38
GRCh372180,809,603 - 180,872,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362180,517,849 - 180,580,025 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2174,403,852 - 174,466,024 (-)NCBICelera
Cytogenetic Map2q31.3NCBI
HuRef2172,661,628 - 172,723,794 (-)NCBIHuRef
CHM1_12180,815,566 - 180,877,744 (-)NCBICHM1_1
T2T-CHM13v2.02180,428,148 - 180,490,575 (-)NCBIT2T-CHM13v2.0
Cwc22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39277,706,312 - 77,776,705 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl277,711,503 - 77,776,719 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38277,881,159 - 77,946,356 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,881,159 - 77,946,375 (-)Ensemblmm10GRCm38
MGSCv37277,733,710 - 77,784,240 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36277,696,492 - 77,747,022 (-)NCBIMGSCv36mm8
Celera279,551,577 - 79,602,185 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map246.45NCBI
Cwc22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540317,083,414 - 17,125,982 (+)Ensembl
ChiLan1.0NW_00495540317,070,588 - 17,125,918 (+)NCBIChiLan1.0ChiLan1.0
CWC22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21382,591,580 - 82,653,836 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B82,606,555 - 82,668,811 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B67,198,535 - 67,261,588 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B184,901,707 - 184,963,884 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B184,901,960 - 184,945,273 (-)EnsemblpanPan2panpan1.1
CWC22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13623,355,501 - 23,415,059 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3623,168,979 - 23,397,045 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3623,376,571 - 23,436,155 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03623,516,478 - 23,576,097 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3623,517,114 - 23,575,942 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13623,610,743 - 23,670,030 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03623,573,499 - 23,633,169 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03623,696,818 - 23,756,425 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cwc22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303140,350,710 - 140,406,968 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365098,903,833 - 8,960,882 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365098,904,613 - 8,960,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CWC22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1585,542,258 - 85,605,614 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11585,541,158 - 85,605,837 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21595,114,817 - 95,179,163 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CWC22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11065,464,537 - 65,527,530 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1065,463,390 - 65,527,520 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040134,022,070 - 134,086,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cwc22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248441,785,775 - 1,846,608 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248441,787,668 - 1,846,167 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cwc22
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1555,225,460 - 55,275,166 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cwc22
532 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:103
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000037684
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH136821  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2362,815,442 - 62,815,644 (+)MAPPERmRatBN7.2
mRatBN7.2362,815,442 - 62,815,645 (+)MAPPERmRatBN7.2
Rnor_6.0364,731,358 - 64,731,560NCBIRnor6.0
Rnor_6.06103,932,405 - 103,932,607NCBIRnor6.0
Rnor_5.06112,106,403 - 112,106,605UniSTSRnor5.0
Rnor_5.0371,298,303 - 71,298,505UniSTSRnor5.0
Celera362,293,835 - 62,294,037UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001062863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY325221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037684   ⟹   ENSRNOP00000039180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl383,222,400 - 83,257,814 (-)Ensembl
mRatBN7.2 Ensembl362,815,230 - 62,850,652 (-)Ensembl
Rnor_6.0 Ensembl364,731,381 - 64,766,472 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103122   ⟹   ENSRNOP00000095427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl383,222,400 - 83,271,513 (-)Ensembl
mRatBN7.2 Ensembl362,815,230 - 62,850,738 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104366   ⟹   ENSRNOP00000079427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl383,209,194 - 83,271,513 (-)Ensembl
mRatBN7.2 Ensembl362,802,045 - 62,864,228 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118363   ⟹   ENSRNOP00000092657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl383,222,400 - 83,271,206 (-)Ensembl
mRatBN7.2 Ensembl362,815,230 - 62,864,228 (-)Ensembl
RefSeq Acc Id: NM_001399981   ⟹   NP_001386910
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,206 (-)NCBI
mRatBN7.2362,815,230 - 62,864,048 (-)NCBI
RefSeq Acc Id: XM_006234425   ⟹   XP_006234487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,401 (-)NCBI
mRatBN7.2362,815,230 - 62,864,149 (-)NCBI
Rnor_6.0364,731,145 - 64,780,008 (-)NCBI
Rnor_5.0371,298,090 - 71,346,831 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761965   ⟹   XP_008760187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,405 (-)NCBI
mRatBN7.2362,815,230 - 62,864,149 (-)NCBI
Rnor_6.0364,731,145 - 64,780,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761966   ⟹   XP_008760188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,427 (-)NCBI
mRatBN7.2362,815,230 - 62,864,269 (-)NCBI
Rnor_6.0364,731,145 - 64,780,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761967   ⟹   XP_008760189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,401 (-)NCBI
mRatBN7.2362,815,230 - 62,864,149 (-)NCBI
Rnor_6.0364,731,145 - 64,780,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063284136   ⟹   XP_063140206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,222,400 - 83,271,401 (-)NCBI
RefSeq Acc Id: XM_063284137   ⟹   XP_063140207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8383,233,889 - 83,271,401 (-)NCBI
RefSeq Acc Id: XP_006234487   ⟸   XM_006234425
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GJW5 (UniProtKB/TrEMBL),   F1LY38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760188   ⟸   XM_008761966
- Peptide Label: isoform X1
- UniProtKB: F1LY38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760189   ⟸   XM_008761967
- Peptide Label: isoform X2
- UniProtKB: F1LY38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760187   ⟸   XM_008761965
- Peptide Label: isoform X1
- UniProtKB: F1LY38 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039180   ⟸   ENSRNOT00000037684
Ensembl Acc Id: ENSRNOP00000079427   ⟸   ENSRNOT00000104366
Ensembl Acc Id: ENSRNOP00000095427   ⟸   ENSRNOT00000103122
Ensembl Acc Id: ENSRNOP00000092657   ⟸   ENSRNOT00000118363
RefSeq Acc Id: NP_001386910   ⟸   NM_001399981
- UniProtKB: A6HMK0 (UniProtKB/TrEMBL),   F1LY38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140206   ⟸   XM_063284136
- Peptide Label: isoform X4
- UniProtKB: A6HMK0 (UniProtKB/TrEMBL),   F1LY38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140207   ⟸   XM_063284137
- Peptide Label: isoform X5
Protein Domains
MI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LY38-F1-model_v2 AlphaFold F1LY38 1-874 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565385 AgrOrtholog
BioCyc Gene G2FUF-49259 BioCyc
Ensembl Genes ENSRNOG00000012651 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037684.8 UniProtKB/TrEMBL
  ENSRNOT00000103122 ENTREZGENE
  ENSRNOT00000103122.2 UniProtKB/TrEMBL
  ENSRNOT00000118363 ENTREZGENE
  ENSRNOT00000118363.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.180 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  CWC22_splicing_factor UniProtKB/TrEMBL
  Initiation_fac_eIF4g_MI UniProtKB/TrEMBL
  MIF4G-like_typ-3 UniProtKB/TrEMBL
NCBI Gene 362153 ENTREZGENE
PANTHER CELL CYCLE CONTROL PROTEIN CWF22-RELATED UniProtKB/TrEMBL
  PRE-MRNA-SPLICING FACTOR CWC22 HOMOLOG UniProtKB/TrEMBL
Pfam MA3 UniProtKB/TrEMBL
  MIF4G UniProtKB/TrEMBL
PhenoGen Cwc22 PhenoGen
PROSITE PS51366 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012651 RatGTEx
SMART MA3 UniProtKB/TrEMBL
  MIF4G UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AJM5_RAT UniProtKB/TrEMBL
  A0A8I6GJW5 ENTREZGENE, UniProtKB/TrEMBL
  A6HMK0 ENTREZGENE, UniProtKB/TrEMBL
  F1LY38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-29 Cwc22  CWC22 spliceosome associated protein  Cwc22  CWC22 spliceosome associated protein homolog  Name changed 629549 APPROVED
2016-08-18 Cwc22  CWC22 spliceosome associated protein homolog  Cwc22  CWC22 homolog, spliceosome-associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-12 Cwc22  CWC22 homolog, spliceosome-associated protein  Cwc22  CWC22 spliceosome-associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-07-09 Cwc22  CWC22 spliceosome-associated protein  Cwc22  CWC22 spliceosome-associated protein homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-12 Cwc22  CWC22 spliceosome-associated protein homolog (S. cerevisiae)  RGD1565385  similar to mKIAA1604 protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565385  similar to mKIAA1604 protein   RGD1565385_predicted  similar to mKIAA1604 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565385_predicted  similar to mKIAA1604 protein (predicted)  LOC362153  similar to mKIAA1604 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362153  similar to mKIAA1604 protein      Symbol and Name status set to provisional 70820 PROVISIONAL