Urgcp (upregulator of cell proliferation) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Urgcp (upregulator of cell proliferation) Rattus norvegicus
Analyze
Symbol: Urgcp
Name: upregulator of cell proliferation
RGD ID: 1564681
Description: Predicted to enable GTP binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human URGCP (upregulator of cell proliferation); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498406; RGD1564681; similar to mitochondrial ribosomal protein S24; up-regulated gene 4; up-regulator of cell proliferation; Urg4
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,808,616 - 84,852,785 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1484,803,653 - 84,863,699 (-)EnsemblGRCr8
mRatBN7.21480,594,637 - 80,638,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,996,431 - 85,021,430 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,236,544 - 86,261,539 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,685,868 - 82,710,863 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,957,726 - 86,002,227 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,957,716 - 85,991,211 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,649,967 - 86,694,245 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41486,367,017 - 86,392,064 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1479,479,557 - 79,504,606 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548  


Genomics

Comparative Map Data
Urgcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,808,616 - 84,852,785 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1484,803,653 - 84,863,699 (-)EnsemblGRCr8
mRatBN7.21480,594,637 - 80,638,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,996,431 - 85,021,430 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,236,544 - 86,261,539 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,685,868 - 82,710,863 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,957,726 - 86,002,227 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,957,716 - 85,991,211 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,649,967 - 86,694,245 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41486,367,017 - 86,392,064 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1479,479,557 - 79,504,606 (-)NCBICelera
Cytogenetic Map14q21NCBI
URGCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,875,913 - 43,926,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl743,875,894 - 43,926,411 (-)Ensemblhg38GRCh38
GRCh37743,915,512 - 43,966,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,882,026 - 43,932,521 (-)NCBIBuild 36Build 36hg18NCBI36
Celera743,905,366 - 43,955,861 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,800,542 - 43,850,705 (-)NCBIHuRef
CHM1_1743,919,395 - 43,969,911 (-)NCBICHM1_1
T2T-CHM13v2.0744,034,204 - 44,085,026 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2743,955,001 - 44,005,497 (-)NCBI
Urgcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,663,417 - 5,712,376 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,663,417 - 5,712,376 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38115,713,417 - 5,762,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)Ensemblmm10GRCm38
MGSCv37115,613,420 - 5,662,379 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36115,614,188 - 5,641,153 (-)NCBIMGSCv36mm8
Celera116,203,912 - 6,252,767 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
URGCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2644,523,614 - 44,574,369 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1792,848,544 - 92,899,132 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0740,324,724 - 40,375,428 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1740,408,771 - 40,421,002 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl740,405,063 - 40,421,002 (+)EnsemblpanPan2panpan1.1
LOC610578
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha161,932,794 - 1,983,870 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01614,878,093 - 14,929,211 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,905,538 - 14,929,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,509,260 - 14,560,323 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,489,751 - 14,540,971 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
URGCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,780,576 - 48,821,582 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11848,780,521 - 48,817,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,469,534 - 53,527,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3
URGCP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,664,575 - 14,711,195 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,699,039 - 14,710,414 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660627,802,058 - 7,850,404 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Urgcp
320 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:426
Count of miRNA genes:228
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000016468
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
D14Rat108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,601,002 - 80,601,154 (+)MAPPERmRatBN7.2
Rnor_6.01485,964,092 - 85,964,243NCBIRnor6.0
Rnor_5.01486,656,332 - 86,656,484NCBIRnor5.0
RGSC_v3.41486,373,380 - 86,373,531UniSTSRGSC3.4
Celera1479,485,924 - 79,486,075UniSTS
RH 3.4 Map14573.5UniSTS
RH 3.4 Map14573.5RGD
RH 2.0 Map14706.8RGD
SHRSP x BN Map1445.59RGD
Cytogenetic Map14q21UniSTS
AA800188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,594,975 - 80,595,097 (+)MAPPERmRatBN7.2
Rnor_6.01485,958,065 - 85,958,186NCBIRnor6.0
Rnor_5.01486,650,306 - 86,650,427UniSTSRnor5.0
RGSC_v3.41486,367,353 - 86,367,474UniSTSRGSC3.4
Celera1479,479,893 - 79,480,014UniSTS
RH 3.4 Map14576.9UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI285944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB720935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB757259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB809919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN934843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EX490902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM041979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM044330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM046879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM056971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016468   ⟹   ENSRNOP00000016468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,609 - 84,863,654 (-)Ensembl
mRatBN7.2 Ensembl1480,594,638 - 80,598,479 (-)Ensembl
Rnor_6.0 Ensembl1485,957,730 - 85,968,037 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076740   ⟹   ENSRNOP00000068129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,475 - 84,833,882 (-)Ensembl
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.0 Ensembl1485,957,716 - 85,982,771 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1485,960,906 - 85,991,211 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076874   ⟹   ENSRNOP00000067978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,609 - 84,833,892 (-)Ensembl
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.0 Ensembl1485,957,729 - 85,982,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094862   ⟹   ENSRNOP00000091693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,609 - 84,821,525 (-)Ensembl
mRatBN7.2 Ensembl1480,594,633 - 80,607,579 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139618   ⟹   ENSRNOP00000102037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,609 - 84,863,699 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142427   ⟹   ENSRNOP00000103478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,190 - 84,853,393 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150657   ⟹   ENSRNOP00000100883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,808,331 - 84,812,504 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163077   ⟹   ENSRNOP00000099331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,805,556 - 84,853,795 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165193   ⟹   ENSRNOP00000101502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,803,653 - 84,853,059 (-)Ensembl
RefSeq Acc Id: NM_001077660   ⟹   NP_001071128
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,833,668 (-)NCBI
mRatBN7.21480,594,640 - 80,619,693 (-)NCBI
Rnor_6.01485,957,729 - 85,982,774 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
RGSC_v3.41486,367,017 - 86,392,064 (-)RGD
Celera1479,479,557 - 79,504,606 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251312   ⟹   XP_006251374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,852,775 (-)NCBI
mRatBN7.21480,594,640 - 80,638,912 (-)NCBI
Rnor_6.01485,957,729 - 86,002,227 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251315   ⟹   XP_006251377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,833,713 (-)NCBI
mRatBN7.21480,594,637 - 80,619,888 (-)NCBI
Rnor_6.01485,957,726 - 85,982,857 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092050   ⟹   XP_038947978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,833,821 (-)NCBI
mRatBN7.21480,594,639 - 80,619,890 (-)NCBI
RefSeq Acc Id: XM_039092051   ⟹   XP_038947979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,852,775 (-)NCBI
mRatBN7.21480,594,640 - 80,638,912 (-)NCBI
RefSeq Acc Id: XM_039092052   ⟹   XP_038947980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,833,659 (-)NCBI
mRatBN7.21480,594,639 - 80,619,771 (-)NCBI
RefSeq Acc Id: XM_063273223   ⟹   XP_063129293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,833,684 (-)NCBI
RefSeq Acc Id: XM_063273225   ⟹   XP_063129295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,808,616 - 84,852,785 (-)NCBI
RefSeq Acc Id: NP_001071128   ⟸   NM_001077660
- UniProtKB: A0A096MJ37 (UniProtKB/TrEMBL),   A6IKN3 (UniProtKB/TrEMBL),   A0A8I6AE57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251377   ⟸   XM_006251315
- Peptide Label: isoform X2
- UniProtKB: A6IKN4 (UniProtKB/TrEMBL),   F1M5F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251374   ⟸   XM_006251312
- Peptide Label: isoform X2
- UniProtKB: A6IKN4 (UniProtKB/TrEMBL),   F1M5F4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016468   ⟸   ENSRNOT00000016468
Ensembl Acc Id: ENSRNOP00000067978   ⟸   ENSRNOT00000076874
Ensembl Acc Id: ENSRNOP00000068129   ⟸   ENSRNOT00000076740
RefSeq Acc Id: XP_038947978   ⟸   XM_039092050
- Peptide Label: isoform X1
- UniProtKB: A0A096MJH4 (UniProtKB/TrEMBL),   F1M5F4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947980   ⟸   XM_039092052
- Peptide Label: isoform X3
- UniProtKB: F1M5F4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947979   ⟸   XM_039092051
- Peptide Label: isoform X3
- UniProtKB: F1M5F4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091693   ⟸   ENSRNOT00000094862
RefSeq Acc Id: XP_063129295   ⟸   XM_063273225
- Peptide Label: isoform X2
- UniProtKB: A6IKN4 (UniProtKB/TrEMBL),   F1M5F4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129293   ⟸   XM_063273223
- Peptide Label: isoform X2
- UniProtKB: A6IKN4 (UniProtKB/TrEMBL),   F1M5F4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102037   ⟸   ENSRNOT00000139618
Ensembl Acc Id: ENSRNOP00000101502   ⟸   ENSRNOT00000165193
Ensembl Acc Id: ENSRNOP00000099331   ⟸   ENSRNOT00000163077
Ensembl Acc Id: ENSRNOP00000103478   ⟸   ENSRNOT00000142427
Ensembl Acc Id: ENSRNOP00000100883   ⟸   ENSRNOT00000150657
Protein Domains
VLIG-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ37-F1-model_v2 AlphaFold A0A096MJ37 1-928 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699471
Promoter ID:EPDNEW_R9984
Type:initiation region
Name:Urgcp_1
Description:upregulator of cell proliferation
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,982,761 - 85,982,821EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564681 AgrOrtholog
BioCyc Gene G2FUF-15129 BioCyc
Ensembl Genes ENSRNOG00000012184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016468 ENTREZGENE
  ENSRNOT00000016468.7 UniProtKB/TrEMBL
  ENSRNOT00000076740 ENTREZGENE
  ENSRNOT00000076740.4 UniProtKB/TrEMBL
  ENSRNOT00000076874 ENTREZGENE
  ENSRNOT00000076874.4 UniProtKB/TrEMBL
  ENSRNOT00000094862.2 UniProtKB/TrEMBL
  ENSRNOT00000139618.1 UniProtKB/TrEMBL
  ENSRNOT00000142427.1 UniProtKB/TrEMBL
  ENSRNOT00000150657.1 UniProtKB/TrEMBL
  ENSRNOT00000163077.1 UniProtKB/TrEMBL
  ENSRNOT00000165193 ENTREZGENE
  ENSRNOT00000165193.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_VLIG_dom UniProtKB/TrEMBL
  GTP1_OBG UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  URGCP UniProtKB/TrEMBL
KEGG Report rno:305493 UniProtKB/TrEMBL
NCBI Gene 305493 ENTREZGENE
PANTHER UP-REGULATOR OF CELL PROLIFERATION UniProtKB/TrEMBL
  URG4-RELATED UniProtKB/TrEMBL
Pfam URGCP UniProtKB/TrEMBL
  URGCP_GTPase UniProtKB/TrEMBL
PhenoGen Urgcp PhenoGen
PRINTS GTP1OBG UniProtKB/TrEMBL
PROSITE G_VLIG UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012184 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A096MJ37 ENTREZGENE, UniProtKB/TrEMBL
  A0A096MJH4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AE57 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZK6_RAT UniProtKB/TrEMBL
  A0ABK0LFL2_RAT UniProtKB/TrEMBL
  A0ABK0LSH1_RAT UniProtKB/TrEMBL
  A6IKN3 ENTREZGENE, UniProtKB/TrEMBL
  A6IKN4 ENTREZGENE, UniProtKB/TrEMBL
  F1M5F4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Urgcp  upregulator of cell proliferation  Urg4  up-regulated gene 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Urg4  up-regulated gene 4  RGD1564681_predicted  similar to mitochondrial ribosomal protein S24 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564681_predicted  similar to mitochondrial ribosomal protein S24 (predicted)  LOC498406  similar to mitochondrial ribosomal protein S24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498406  similar to mitochondrial ribosomal protein S24      Symbol and Name status set to provisional 70820 PROVISIONAL