Advanced Search (OLGA)

Gene: Layn (layilin) Rattus norvegicus

Analyze

Symbol:

Layn

Name:

layilin

RGD ID:

1564444

Description:

Predicted to enable hyaluronic acid binding activity. Predicted to be located in membrane. Orthologous to human LAYN (layilin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500996; RGD1564444; similar to layilin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LAYN (layilin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Layn (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Layn (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LAYN (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LAYN (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Layn (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LAYN (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LAYN (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Layn (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Layn (layilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LAYN (layilin)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Layn (layilin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	layna (layilin a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	layna (layilin a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rem1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	layn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	layn	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-167	Alliance	DIOPT (InParanoid\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	60,261,325 - 60,280,797 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	60,263,456 - 60,281,418 (-)	Ensembl				GRCr8
mRatBN7.2	8	51,363,928 - 51,384,748 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	51,367,091 - 51,384,330 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	56,914,525 - 56,931,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	55,193,448 - 55,210,773 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	53,057,712 - 53,075,039 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	55,447,203 - 55,469,420 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	55,447,709 - 55,467,688 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	54,044,547 - 54,064,579 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	54,379,434 - 54,396,580 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	50,913,524 - 50,930,695 (-)	NCBI		Celera
Cytogenetic Map	8	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acetamide (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butanal (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

dextran sulfate (ISO)

dorsomorphin (ISO)

entinostat (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indole-3-methanol (EXP)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

hyaluronic acid binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11294894	PMID:21423176

Genomics

Comparative Map Data

Layn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	60,261,325 - 60,280,797 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	60,263,456 - 60,281,418 (-)	Ensembl				GRCr8
mRatBN7.2	8	51,363,928 - 51,384,748 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	51,367,091 - 51,384,330 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	56,914,525 - 56,931,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	55,193,448 - 55,210,773 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	53,057,712 - 53,075,039 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	55,447,203 - 55,469,420 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	55,447,709 - 55,467,688 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	54,044,547 - 54,064,579 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	54,379,434 - 54,396,580 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	50,913,524 - 50,930,695 (-)	NCBI		Celera
Cytogenetic Map	8	q23	NCBI

LAYN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	111,540,280 - 111,561,745 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	111,540,280 - 111,561,745 (+)	Ensembl			hg38	GRCh38
GRCh37	11	111,411,005 - 111,432,470 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	110,916,443 - 110,936,998 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	108,564,419 - 108,584,973 (+)	NCBI		Celera
Cytogenetic Map	11	q23.1	NCBI
HuRef	11	107,335,428 - 107,356,671 (+)	NCBI		HuRef
CHM1_1	11	111,294,325 - 111,315,557 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	111,550,425 - 111,571,891 (+)	NCBI		T2T-CHM13v2.0

Layn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	50,966,323 - 50,988,501 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	50,965,940 - 50,988,394 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	51,055,023 - 51,077,209 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	51,054,640 - 51,077,094 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	50,864,885 - 50,885,199 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	50,809,526 - 50,829,324 (-)	NCBI		MGSCv36	mm8
Celera	9	48,343,167 - 48,363,553 (-)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI
cM Map	9	27.79	NCBI

Layn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	13,280,327 - 13,297,833 (+)	Ensembl
ChiLan1.0	NW_004955412	13,282,871 - 13,298,214 (+)	NCBI	ChiLan1.0	ChiLan1.0

LAYN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	112,286,747 - 112,321,858 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	113,378,821 - 113,413,901 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	106,423,134 - 106,443,237 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	110,267,428 - 110,287,937 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	110,267,762 - 110,287,935 (+)	Ensembl			panPan2	panpan1.1

LAYN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	21,509,143 - 21,531,390 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	21,512,026 - 21,531,641 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	21,431,419 - 21,452,906 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	21,535,081 - 21,556,912 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	21,535,007 - 21,556,895 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	21,596,321 - 21,618,027 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	21,496,724 - 21,518,168 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	21,544,917 - 21,566,929 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Layn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	93,831,104 - 93,857,972 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936612	2,853,633 - 2,872,948 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936612	2,853,354 - 2,872,861 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LAYN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	39,306,300 - 39,327,072 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	39,306,276 - 39,326,825 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	44,120,371 - 44,141,679 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LAYN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	102,878,396 - 102,900,814 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	102,879,428 - 102,899,743 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	23,074,627 - 23,095,688 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Layn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	6,642,728 - 6,662,957 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624784	6,642,580 - 6,661,043 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Layn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	45,484,943 - 45,510,659 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Layn
58 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	63
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000040162
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	49610204	68373388	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	50763951	67219641	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat

Markers in Region

BE120326

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	51,366,666 - 51,366,830 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	55,449,942 - 55,450,105	NCBI	Rnor6.0
Rnor_5.0	8	54,046,652 - 54,046,815	UniSTS	Rnor5.0
RGSC_v3.4	8	54,379,010 - 54,379,173	UniSTS	RGSC3.4
Celera	8	50,913,100 - 50,913,263	UniSTS
RH 3.4 Map	8	554.0	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	355	192	11	141	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040162 ⟹ ENSRNOP00000050686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	60,263,456 - 60,280,617 (-)	Ensembl
mRatBN7.2 Ensembl	8	51,367,091 - 51,384,330 (-)	Ensembl
Rnor_6.0 Ensembl	8	55,450,366 - 55,467,579 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088607 ⟹ ENSRNOP00000071344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	60,263,456 - 60,280,842 (-)	Ensembl
mRatBN7.2 Ensembl	8	51,367,091 - 51,384,330 (-)	Ensembl
Rnor_6.0 Ensembl	8	55,447,709 - 55,467,688 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156939 ⟹ ENSRNOP00000112146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	60,263,456 - 60,280,931 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165306 ⟹ ENSRNOP00000104639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	60,263,456 - 60,281,418 (-)	Ensembl

RefSeq Acc Id:

NM_001191997 ⟹ NP_001178926

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,263,456 - 60,280,617 (-)	NCBI
mRatBN7.2	8	51,367,091 - 51,384,254 (-)	NCBI
Rnor_6.0	8	55,450,366 - 55,467,579 (-)	NCBI
Rnor_5.0	8	54,044,547 - 54,064,579 (-)	NCBI
Celera	8	50,913,524 - 50,930,695 (-)	NCBI

Sequence:

show sequence

ATGCAACCCGGAGCAGCGCTGCAGGCCATGTTGCTGGCGGTGCTGCTGGCCAAACCGAGGGATT
CGAAGGGTCACCTGCTGAGCGGTGACTTGGACCCCAGAGGAGGGCAGCGGTTCTGCTGGGAAGG
GACACGGAGGCCTTGCTACAGAGTCATTTATTTCCATGACACCTCTCAAAGACGGAACTTTGAG
GAAGCGAAAGAAGCCTGCATGAAGGATGGAGGACAGCTAGCCAGCATAGAAACGGCAGATGAGC
AGAGGCTGATAGAGAACTTCATTGAAAGCCTCCAGGCATCTGATGGTGATTTCTGGATTGGCCT
CAAGAGGTTGGAGGAGAAACAGCACAACAGCACAGCCTGCCAGGACCTTTACGCTTGGACAGAT
GGAAGCCTGTCACAGTTCAGGAACTGGTATATGGATGAGCCTTCCTGTGAGAGCGAGGTCTGCG
TGGTCATGTACCATCAGCCATCAGCACCTCCGGGCATCGGGGGCCCATATATGTTCCAGTGGAA
TGACGACCGGTGCAACACGAAGAAGAATTTCATTTGCAAATATTCTGACGATAAACCAAGTACA
ACACCCTCTCTTAGTCCTGGAGGTGAAGCAACTGAGCCAGCAGCACCCATACTTCCAGAAGAAA
CTCTGGAAATAGACACCAAAGAACGCAGAGAGGCTGCTTTGAATCTTGCCTACATCCTAATTCC
CAGTATTCCCCTTTTCCTCCTACTTGTGGTCACTTCAGCTGTGTGTTGGGTTTGGATCTGTAGA
AGAAAACGGGAACAGACAGACCCTCCCACAAAGGAGCAGCACACCATTTGGCCCACTCCTCACC
AAGAGAACAGCCCTGACCTAGAAGTTTACAATGTCATCAGAAAACAAAGTGAAGCTGATTTAGC
CGAGCCCCGGCCAGATCTGAAGAACATCTCCTTCCGGGTGTGTTCTGGGGAAGCCATGCCCGAT
GACACGTCTTGTGACTATGACAACATGGTTATAAACCCTTCTGAAAGTGGGTTAGTGACTTTGG
CAAGTATGGAGGGTAGATTTGTGACCAATGACATCTATGAATTCTCCCCCGACAGAATGGGGAG
GAGCAAGGAGAGTGGATGGGTAGAAAATGAAATATATTACTAAGACATATGAAAAAACCAGCAA
GAATGTAAAA

hide sequence

RefSeq Acc Id:

XM_006243049 ⟹ XP_006243111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,280,777 (-)	NCBI
mRatBN7.2	8	51,364,562 - 51,384,744 (-)	NCBI
Rnor_6.0	8	55,447,203 - 55,469,419 (-)	NCBI
Rnor_5.0	8	54,044,547 - 54,064,579 (-)	NCBI

Sequence:

show sequence

ACAAATCTAACAGATATGCATCCTGGGAGGTGGGAAGTATTGGGGTCCTTACTGTATGCCACTA
CACTCAGTTAATTGCATATGCTGACAAAGCCCCAATGTGGACCAAAGTCAGAGTGTCGAAAGGA
GAACTCGAGACACAATTATTGGAAACCACGTGGTAGTTTCCTGAGTGAAACAGATCTTGTAATG
TTAGAAATAAATCACTTAAGCTGACATTAAGTCAAATATAACTGCACCTTTTCATTCGTTATTT
GTCTTGACAAACCATCACAAAACTCCTAAAGCAGTGATTAATGCCATCAAGAAATATGATGATG
AAAGTGACCTGCCAACGGCCACACAGACACCGAGGAAATGCAGCATTTCAGATGGGACATCAGG
CACCACGTCAGGGTCCTACCATCACAACAGCTGCTTTGCTGGGGTGACATTCTAGAAAGAATGG
CTGCTGTGAGATAATCTAACACAGGAAAGGGCTGCCGGTCCTCTGTTGGGGCTGGGCTTCTGCA
GCTGCACAACTCTGCTACAGTCTCAGCTGGAGCTGAGACACATCCTTCCCTACCCCTCCTGCTT
TAAATCCCAGGCCTGTCTAGAACTGCAGCACGTACCGCTTCGTTTTTCAAACATTTGTTTATTT
GCATGTTGTGTGTTATGGGTGTTTTCCCTGCATGTATGTGTGCAGAGTCACCATGTGTGCACTC
TGGGCCAGAAGAAGGCAGGAGAACCCCTGGAACTGGAGATGCAGTTGATTGTGAGCCACTACCC
GGTGCTGGCGTTGAACCCAGTCCTACACAAGAGTAAGGACTGCTCTTAACCACGGATCCATCTC
TCAGGCCCCTTCTCTGCTTTTCTGACTGCTCTGCTGAAAAGTTAGATAAATAGGTAAACACGTG
CAAAGTAGGACCTAAATCCAGAGGGCTCTAATGCAGCTGTGGTTTCTGCTATGCCTCACAATAC
CATAGTGTACCAGAAAGGGCAAAGAACTCAGCTTTCTACTTAATAGATTTTTGATAGGAGACTG
GCTCTACTGCGTGAATGTATTTGAGAACACAAAGGTAAACACAACTATTGTGGGAGTGTAAAGG
GGACCATACACTTAGGTTACTTATGAACTCCTGTGTAGGGAGAATAGGATCATTCTTGGCTACA
GGAGTCTTCTTTATGTCCACCAAACGCTAAACTCCACCAAAGCACTCCTATCTCCCAATATGTG
TCCTACACAAAGCAAAATGGCTTTCTGGTTGAGATCTGGCTTCTGCTGGAGGTCTCCCTCAGGC
CAAAGCTGAAATGGAGGTCACACTGCCTGCCTGAGAATCTGTTTCTCCCTTGCTCAAGTTCCTT
CCCAGATGCTGCTGTGGTCTGAAGTTTGCTGTGGTGTAAGTAGGGGTTTTGTTATTTTGGTCCA
CTCGAGCTGGGTGGTGATGAGGTCAAGAGGTGATACTGTGAGAAGACACAGTACCTGCTTTCTA
CCTTCCGGGAGTTGAGAACTAGCGGGGTTTTACTCTTAGGCAAACTCAGAATCTCCCTAGTCAG
CTAGCGCTCTCTCTCTGCAAAGAGCGGCCCCTTCCGTTGGCTACTCCCCCTGAGTTTGCAGTTT
CTGGAGACTGGAGCACTGGACGTTGGGGGCGGGCCAGCCAAAGGGGCTGCCTTCCCTGCAGTGA
CGTCCCAGGAGGTGGAGGAGCAACCAACCAGTCTGAGCCCTCCTGGACTCCGCCCAGTGCGGGG
TCTGGATCCTTGGGAGATGCAGCTTCCTTGGTTGCAGTTGTCCAAAGCAGTCGCCGACTTGCCC
ACTTCTCTGCCTTAGTCCCGGAGTGTCAGGAGGCACTGGAGTCCAGCTATGCAACCCGGAGCAG
CGCTGCAGGCCATGTTGCTGGCGGTGCTGCTGGCCAAACCGAGGGATTCGAAGGGTCACCTGCT
GAGCGGGCAGCGGTTCTGCTGGGAAGGGACACGGAGGCCTTGCTACAGAGTCATTTATTTCCAT
GACACCTCTCAAAGACGGAACTTTGAGGAAGCGAAAGAAGCCTGCATGAAGGATGGAGGACAGC
TAGCCAGCATAGAAACGGCAGATGAGCAGAGGCTGATAGAGAACTTCATTGAAAGCCTCCAGGC
ATCTGATGGTGATTTCTGGATTGGCCTCAAGAGGTTGGAGGAGAAACAGCACAACAGCACAGCC
TGCCAGGACCTTTACGCTTGGACAGATGGAAGCCTGTCACAGTTCAGGAACTGGTATATGGATG
AGCCTTCCTGTGAGAGCGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCTCCGGGCAT
CGGGGGCCCATATATGTTCCAGTGGAATGACGACCGGTGCAACACGAAGAAGAATTTCATTTGC
AAATATTCTGACGATAAACCAAGTACAACACCCTCTCTTAGTCCTGGAGGTGAAGCAACTGAGC
CAGCAGCACCCATACTTCCAGAAGAAACTCTGGAAATAGACACCAAAGAACGCAGAGAGGCTGC
TTTGAATCTTGCCTACATCCTAATTCCCAGTATTCCCCTTTTCCTCCTACTTGTGGTCACTTCA
GCTGTGTGTTGGGTTTGGATCTGTAGAAGAAAACGGGAACAGACAGACCCTCCCACAAAGGAGC
AGCACACCATTTGGCCCACTCCTCACCAAGAGAACAGCCCTGACCTAGAAGTTTACAATGTCAT
CAGAAAACAAAGTGAAGCTGATTTAGCCGAGCCCCGGCCAGATCTGAAGAACATCTCCTTCCGG
GTGTGTTCTGGGGAAGCCATGCCCGATGACACGTCTTGTGACTATGACAACATGGTTATAAACC
CTTCTGAAAGTGGGTTAGTGACTTTGGCAAGTATGGAGGGTAGATTTGTGACCAATGACATCTA
TGAATTCTCCCCCGACAGAATGGGGAGGAGCAAGGAGAGTGGATGGGTAGAAAATGAAATATAT
TACTAAGACATATGAAAAAACCAGCAAGAATGTAAAAAGAGAAGGAAAAGCCTCCAATGTCTTA
CAAAGACGATATTCAGAAGGCTTATGAGAAGGTTCAGCTCAGGTCTTAGGGGCAAGCACAGCAT
CACAAGTTCCTTCTGGGTCCCCAAGTTCTGGCTGCACTCCCTATCCAGGAACCTCGTCCAGCTC
AGCCTGGTCCAAGGCACCTCACCCAAGGGGCTGCTGCACAGCAGACCCTCAGAGAAAGCCAGTG
GCTTCCAACTGACGCTCAAGAGCTGGTGCTTTCCCTGGTCAGGATTAAGGTGTGACCAGGGAGC
TTGGAAAGCCTACCTCTAGGCTCTGTTTTCCTTGCTCTGTACATCTGTGCAGGCAATCACAAAG
ACACAAATGGTGGGATCCTCTCAAAGCCTCTGTATGGAAGCCCCAGGCTGGCCTGCACATCAAC
AATTCCCAACCTGCATCCCACCCCCACCCCTGAAAAAAAAAGTCAATAAAAAGCAGGAAGCAGA
ATGTTAGTCAGTCTGTGTCTACAGCCCTTCCTCTGCATGTGGCCTCAGGGGAGTTTTTTTTTTT
TTTTTCATTCTCCCAACATCTAAACTTGGAAAAGTCCAACTTGGAAATACTTTCGAAAGTAAAA
ATGAGCTCTGTTTGCTTCAGAGCTTCTTCTTCTCTGGGCTCAGACAGTATGTGCTGTTCTGGGG
ATGGGTGGCAGCAGCATAGGAAACTGACTGTATACAGGACTGGTGAAAAGAGTCGACCTAGTAA
GGAAAAGGAGAGGCAGGCTTCTCACTATCAGAGAAGGCAGCCACGGTCACCAGAAGGGAGGAAA
CTGGAACAGGTCCTGTTGTGTGCAAGGGGAATCGAAACAGTGCTGCCGTCATTGTGGAATTTTA
TGTACTGAGTATACATATATATGTATGTTTATATGTGTATGTATATGTGTGTTTTCCATTAAAT
AAGCCAGTACTCCATGAAACTGGATGACTCAAGGACAGAAGCAGAAGAAATATGAGTTACTTAA
GTAATGAAAAGGAAATAATGGGTATCTAAACATAGATAGAATTAACAGGTTTATTGTTCTACAG
GAACAATGAGGACCCGGATATCACAATGACCTATAACGTATTTATGAATAACTATGAGAAAGGA
GCTCAAGGGCAGCAAACACAAAGTCATGATAAAAATATATTTATTGCCTTGGTTGACTAGTACA
CATTGTATATTTGTACTGTTAAGTAATACCATTGTTAAAACTTAAAGAGATTGGGAATGAGAAT
GTTCATTTGGGAAATTTTACACCACCACCAAGCAAGACTGATTAAGAATCAGCAGATAGGGTTG
GGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAGGCGCAAGGCCCTGGGTTTGGTCCCCAGC
TCCGGAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAAAAAAAAAAGAATCAGCAGATCACAGACA
CCAACTCGTAATGATCCACCTTTGGTAATGAGGATTAATTTGAATATTAAATCATTGAAAGTAA
AACCAACAAAGAGAATGTGACTCAATGGGTAAAGTGGGAAAACATGGGCATATGCTGATACAAA
ATAAAAGAATAAATTAAAACTTTGATGTAGATGGTATATTTACATGATTTCAGGTAAAGATCAT
TGATTGCAAAAGTGACCCAACAGGCAAAGCCACCTCAGTCACCTGATGAATGTGAATTCTGTGG
ACGACGAAGTGTACTGAGATTGTAGACCTCACACTGTGGTGTGGTGAGAGGGACATGGCATCAC
ATCCACGCTGTCTCACAGTGTACAAGCTGATCATAAGGAGGCCTTGCATAACAACAATTTGATG
GACAATCTACAAACTACCTGGACGGCAAACCTGAACTCTGATGGTAAAGACGGTGGAAGCGAGA
CAGGGGCAGCTGCAATAGGAGGACAGTAAGGTGATGGCTCCAAGCGTGACCAGATCCTGAAATG
GATCCCTTTTCTCCTGTAAAGGAGAAGATGGGAACAAATGTGGATGACGTCTGAGGACTAAATG
TCAAAAACGTGCAGTGCTAACTTCCTAACTTTTGCGTTGCCCTGAGGACATGGCCTCTTGGCAC
TGGGAATGTCTTCCCAGAAAGCACACAGTGAAGTAATAAAGGACAATGGACTATCAGGTTGACC
ACTTTCTCTCGTGTGATATGGGGACAGGGATGCACTGTACCTGCAATCTCTCCTCTGTTAGAAA
TTATTTTTGGAAAACCATTTACAAACATAATTTCTATAGCCATGGATTCCATGACTCACACTAT
GCTACCCATGCATCTGAAGTCAATATACAGGCTGTGGCTGATAGCATCTAACAGTCTTTGATCA
AAGACAAAAGTAAATGAACTCCTAATAGAACCGTCCTCAGTACCTAGCCCCAGGTTCTGGCAGG
GAGCTGTGATGAGCCAGCCTGCAATATCCAATTCAGTGACACCTTTCTTCCAATATTCCCCATC
TTTCCCCTTTGGAAATGCAAATGAGTTGTGTGATCTAGAATAAACATCAAGGTGTCTTTCAACT
CCAAAATCATTTTATTTCAATATTGTAATAGCTTCTGTAGAGCATTTGACAGCCTCCTGAACTT
GTAGTAAGACACTCATAATAACAGAGACAGATACAAATATGAAATTGCACGGAATTGCACCCTC
AGAGGCAAAGTCATTTTTCTACAGACCTTTGTCTCTTTCTCCTGAAGACCAGTAAACGGTTACT
AATTCCTAACTAATCGTAAGTTACCAGAGAGTCTTGAGACTGAACATCAGAAAAGGTGACCAGA
ATGAGTTATCAGGTCAAGAACATGAGGAAAAACAAGCCTCCCAAAATATAGTAAGGCCAGTTAT
AAAGTTTTCTAGACATAATGGGCTTATTAAATGGACCATAACCTTCAAATAGGTACTTGAATAT
AAGATAGCATTTCCATATACTAATAAGAAAATTTAGTCTACCTTAAGGAGCTCAAAGTTAGGGT
TGTACTGTTTGTTAAACTCTGTTTTCACAACAGTTTATAACTGCTCGACAGTAATAGTAAGAAA
CACCAATGCACTAAGGGCTTAGTCAGGAAACTAGGGGCTGCTTTAACTTTTTATACCACCAGAT
GGCAGTAGTAAGATGCCATCAGTTTCTGTCAACTTCCTACATCTACAGTAAGAAGCAGGCAGGC

hide sequence

RefSeq Acc Id:

XM_006243052 ⟹ XP_006243114

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,277,806 (-)	NCBI
mRatBN7.2	8	51,364,562 - 51,381,435 (-)	NCBI
Rnor_6.0	8	55,447,203 - 55,464,704 (-)	NCBI
Rnor_5.0	8	54,044,547 - 54,064,579 (-)	NCBI

Sequence:

show sequence

AGGATGGAGGACAGCTAGCCAGCATAGAAACGGCAGATGAGCAGAGGCTGATAGAGAACTTCAT
TGAAAGCCTCCAGGCATCTGATGGTGATTTCTGGATTGGCCTCAAGAGGTTGGAGGAGAAACAG
CACAACAGCACAGCCTGCCAGGACCTTTACGCTTGGACAGATGGAAGCCTGTCACAGTTCAGGA
ACTGGTATATGGATGAGCCTTCCTGTGAGAGCGAGGTCTGCGTGGTCATGTACCATCAGCCATC
AGCACCTCCGGGCATCGGGGGCCCATATATGTTCCAGTGGAATGACGACCGGTGCAACACGAAG
AAGAATTTCATTTGCAAATATTCTGACGATAAACCAAGTACAACACCCTCTCTTAGTCCTGGAG
ACCTCAGAGCATGTCTGGACTACAGCACCTTCCTTCAAGTTCTCAAGTCCATGTGTATCTCTCT
CAGGTGAAGCAACTGAGCCAGCAGCACCCATACTTCCAGAAGAAACTCTGGAAATAGACACCAA
AGAACGCAGAGAGGCTGCTTTGAATCTTGCCTACATCCTAATTCCCAGTATTCCCCTTTTCCTC
CTACTTGTGGTCACTTCAGCTGTGTGTTGGGTTTGGATCTGTAGAAGAAAACGGGAACAGACAG
ACCCTCCCACAAAGGAGCAGCACACCATTTGGCCCACTCCTCACCAAGAGAACAGCCCTGACCT
AGAAGTTTACAATGTCATCAGAAAACAAAGTGAAGCTGATTTAGCCGAGCCCCGGCCAGATCTG
AAGAACATCTCCTTCCGGGTGTGTTCTGGGGAAGCCATGCCCGATGACACGTCTTGTGACTATG
ACAACATGGTTATAAACCCTTCTGAAAGTGGGTTAGTGACTTTGGCAAGTATGGAGGGTAGATT
TGTGACCAATGACATCTATGAATTCTCCCCCGACAGAATGGGGAGGAGCAAGGAGAGTGGATGG
GTAGAAAATGAAATATATTACTAAGACATATGAAAAAACCAGCAAGAATGTAAAAAGAGAAGGA
AAAGCCTCCAATGTCTTACAAAGACGATATTCAGAAGGCTTATGAGAAGGTTCAGCTCAGGTCT
TAGGGGCAAGCACAGCATCACAAGTTCCTTCTGGGTCCCCAAGTTCTGGCTGCACTCCCTATCC
AGGAACCTCGTCCAGCTCAGCCTGGTCCAAGGCACCTCACCCAAGGGGCTGCTGCACAGCAGAC
CCTCAGAGAAAGCCAGTGGCTTCCAACTGACGCTCAAGAGCTGGTGCTTTCCCTGGTCAGGATT
AAGGTGTGACCAGGGAGCTTGGAAAGCCTACCTCTAGGCTCTGTTTTCCTTGCTCTGTACATCT
GTGCAGGCAATCACAAAGACACAAATGGTGGGATCCTCTCAAAGCCTCTGTATGGAAGCCCCAG
GCTGGCCTGCACATCAACAATTCCCAACCTGCATCCCACCCCCACCCCTGAAAAAAAAAGTCAA
TAAAAAGCAGGAAGCAGAATGTTAGTCAGTCTGTGTCTACAGCCCTTCCTCTGCATGTGGCCTC
AGGGGAGTTTTTTTTTTTTTTTTCATTCTCCCAACATCTAAACTTGGAAAAGTCCAACTTGGAA
ATACTTTCGAAAGTAAAAATGAGCTCTGTTTGCTTCAGAGCTTCTTCTTCTCTGGGCTCAGACA
GTATGTGCTGTTCTGGGGATGGGTGGCAGCAGCATAGGAAACTGACTGTATACAGGACTGGTGA
AAAGAGTCGACCTAGTAAGGAAAAGGAGAGGCAGGCTTCTCACTATCAGAGAAGGCAGCCACGG
TCACCAGAAGGGAGGAAACTGGAACAGGTCCTGTTGTGTGCAAGGGGAATCGAAACAGTGCTGC
CGTCATTGTGGAATTTTATGTACTGAGTATACATATATATGTATGTTTATATGTGTATGTATAT
GTGTGTTTTCCATTAAATAAGCCAGTACTCCATGAAACTGGATGACTCAAGGACAGAAGCAGAA
GAAATATGAGTTACTTAAGTAATGAAAAGGAAATAATGGGTATCTAAACATAGATAGAATTAAC
AGGTTTATTGTTCTACAGGAACAATGAGGACCCGGATATCACAATGACCTATAACGTATTTATG
AATAACTATGAGAAAGGAGCTCAAGGGCAGCAAACACAAAGTCATGATAAAAATATATTTATTG
CCTTGGTTGACTAGTACACATTGTATATTTGTACTGTTAAGTAATACCATTGTTAAAACTTAAA
GAGATTGGGAATGAGAATGTTCATTTGGGAAATTTTACACCACCACCAAGCAAGACTGATTAAG
AATCAGCAGATAGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAGGCGCAAGGCC
CTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAAAAAAAAAAGA
ATCAGCAGATCACAGACACCAACTCGTAATGATCCACCTTTGGTAATGAGGATTAATTTGAATA
TTAAATCATTGAAAGTAAAACCAACAAAGAGAATGTGACTCAATGGGTAAAGTGGGAAAACATG
GGCATATGCTGATACAAAATAAAAGAATAAATTAAAACTTTGATGTAGATGGTATATTTACATG
ATTTCAGGTAAAGATCATTGATTGCAAAAGTGACCCAACAGGCAAAGCCACCTCAGTCACCTGA
TGAATGTGAATTCTGTGGACGACGAAGTGTACTGAGATTGTAGACCTCACACTGTGGTGTGGTG
AGAGGGACATGGCATCACATCCACGCTGTCTCACAGTGTACAAGCTGATCATAAGGAGGCCTTG
CATAACAACAATTTGATGGACAATCTACAAACTACCTGGACGGCAAACCTGAACTCTGATGGTA
AAGACGGTGGAAGCGAGACAGGGGCAGCTGCAATAGGAGGACAGTAAGGTGATGGCTCCAAGCG
TGACCAGATCCTGAAATGGATCCCTTTTCTCCTGTAAAGGAGAAGATGGGAACAAATGTGGATG
ACGTCTGAGGACTAAATGTCAAAAACGTGCAGTGCTAACTTCCTAACTTTTGCGTTGCCCTGAG
GACATGGCCTCTTGGCACTGGGAATGTCTTCCCAGAAAGCACACAGTGAAGTAATAAAGGACAA
TGGACTATCAGGTTGACCACTTTCTCTCGTGTGATATGGGGACAGGGATGCACTGTACCTGCAA
TCTCTCCTCTGTTAGAAATTATTTTTGGAAAACCATTTACAAACATAATTTCTATAGCCATGGA
TTCCATGACTCACACTATGCTACCCATGCATCTGAAGTCAATATACAGGCTGTGGCTGATAGCA
TCTAACAGTCTTTGATCAAAGACAAAAGTAAATGAACTCCTAATAGAACCGTCCTCAGTACCTA
GCCCCAGGTTCTGGCAGGGAGCTGTGATGAGCCAGCCTGCAATATCCAATTCAGTGACACCTTT
CTTCCAATATTCCCCATCTTTCCCCTTTGGAAATGCAAATGAGTTGTGTGATCTAGAATAAACA
TCAAGGTGTCTTTCAACTCCAAAATCATTTTATTTCAATATTGTAATAGCTTCTGTAGAGCATT
TGACAGCCTCCTGAACTTGTAGTAAGACACTCATAATAACAGAGACAGATACAAATATGAAATT
GCACGGAATTGCACCCTCAGAGGCAAAGTCATTTTTCTACAGACCTTTGTCTCTTTCTCCTGAA
GACCAGTAAACGGTTACTAATTCCTAACTAATCGTAAGTTACCAGAGAGTCTTGAGACTGAACA
TCAGAAAAGGTGACCAGAATGAGTTATCAGGTCAAGAACATGAGGAAAAACAAGCCTCCCAAAA
TATAGTAAGGCCAGTTATAAAGTTTTCTAGACATAATGGGCTTATTAAATGGACCATAACCTTC
AAATAGGTACTTGAATATAAGATAGCATTTCCATATACTAATAAGAAAATTTAGTCTACCTTAA
GGAGCTCAAAGTTAGGGTTGTACTGTTTGTTAAACTCTGTTTTCACAACAGTTTATAACTGCTC
GACAGTAATAGTAAGAAACACCAATGCACTAAGGGCTTAGTCAGGAAACTAGGGGCTGCTTTAA
CTTTTTATACCACCAGATGGCAGTAGTAAGATGCCATCAGTTTCTGTCAACTTCCTACATCTAC
AGTAAGAAGCAGGCAGGC

hide sequence

RefSeq Acc Id:

XM_008766328 ⟹ XP_008764550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,280,797 (-)	NCBI
mRatBN7.2	8	51,364,562 - 51,384,746 (-)	NCBI
Rnor_6.0	8	55,447,203 - 55,469,420 (-)	NCBI

Sequence:

show sequence

TACAAATCTAACAGATATGCATCCTGGGAGGTGGGAAGTATTGGGGTCCTTACTGTATGCCACT
ACACTCAGTTAATTGCATATGCTGACAAAGCCCCAATGTGGACCAAAGTCAGAGTGTCGAAAGG
AGAACTCGAGACACAATTATTGGAAACCACGTGGTAGTTTCCTGAGTGAAACAGATCTTGTAAT
GTTAGAAATAAATCACTTAAGCTGACATTAAGTCAAATATAACTGCACCTTTTCATTCGTTATT
TGTCTTGACAAACCATCACAAAACTCCTAAAGCAGTGATTAATGCCATCAAGAAATATGATGAT
GAAAGTGACCTGCCAACGGCCACACAGACACCGAGGAAATGCAGCATTTCAGATGGGACATCAG
GCACCACGTCAGGGTCCTACCATCACAACAGCTGCTTTGCTGGGGTGACATTCTAGAAAGAATG
GCTGCTGTGAGATAATCTAACACAGGAAAGGGCTGCCGGTCCTCTGTTGGGGCTGGGCTTCTGC
AGCTGCACAACTCTGCTACAGTCTCAGCTGGAGCTGAGACACATCCTTCCCTACCCCTCCTGCT
TTAAATCCCAGGCCTGTCTAGAACTGCAGCACGTACCGCTTCGTTTTTCAAACATTTGTTTATT
TGCATGTTGTGTGTTATGGGTGTTTTCCCTGCATGTATGTGTGCAGAGTCACCATGTGTGCACT
CTGGGCCAGAAGAAGGCAGGAGAACCCCTGGAACTGGAGATGCAGTTGATTGTGAGCCACTACC
CGGTGCTGGCGTTGAACCCAGTCCTACACAAGAGTAAGGACTGCTCTTAACCACGGATCCATCT
CTCAGGCCCCTTCTCTGCTTTTCTGACTGCTCTGCTGAAAAGTTAGATAAATAGGTAAACACGT
GCAAAGTAGGACCTAAATCCAGAGGGCTCTAATGCAGCTGTGGTTTCTGCTATGCCTCACAATA
CCATAGTGTACCAGAAAGGGCAAAGAACTCAGCTTTCTACTTAATAGATTTTTGATAGGAGACT
GGCTCTACTGCGTGAATGTATTTGAGAACACAAAGGTAAACACAACTATTGTGGGAGTGTAAAG
GGGACCATACACTTAGGTTACTTATGAACTCCTGTGTAGGGAGAATAGGATCATTCTTGGCTAC
AGGAGTCTTCTTTATGTCCACCAAACGCTAAACTCCACCAAAGCACTCCTATCTCCCAATATGT
GTCCTACACAAAGCAAAATGGCTTTCTGGTTGAGATCTGGCTTCTGCTGGAGGTCTCCCTCAGG
CCAAAGCTGAAATGGAGGTCACACTGCCTGCCTGAGAATCTGTTTCTCCCTTGCTCAAGTTCCT
TCCCAGATGCTGCTGTGGTCTGAAGTTTGCTGTGGTGTAAGTAGGGGTTTTGTTATTTTGGTCC
ACTCGAGCTGGGTGGTGATGAGGTCAAGAGGTGATACTGTGAGAAGACACAGTACCTGCTTTCT
ACCTTCCGGGAGTTGAGAACTAGCGGGGTTTTACTCTTAGGCAAACTCAGAATCTCCCTAGTCA
GCTAGCGCTCTCTCTCTGCAAAGAGCGGCCCCTTCCGTTGGCTACTCCCCCTGAGTTTGCAGTT
TCTGGAGACTGGAGCACTGGACGTTGGGGGCGGGCCAGCCAAAGGGGCTGCCTTCCCTGCAGTG
ACGTCCCAGGAGGTGGAGGAGCAACCAACCAGTCTGAGCCCTCCTGGACTCCGCCCAGTGCGGG
GTCTGGATCCTTGGGAGATGCAGCTTCCTTGGTTGCAGTTGTCCAAAGCAGTCGCCGACTTGCC
CACTTCTCTGCCTTAGTCCCGGAGTGTCAGGAGGCACTGGAGTCCAGCTATGCAACCCGGAGCA
GCGCTGCAGGCCATGTTGCTGGCGGTGCTGCTGGCCAAACCGAGGGATTCGAAGGGTCACCTGC
TGAGCGGGCAGCGGTTCTGCTGGGAAGGGACACGGAGGCCTTGCTACAGAGTCATTTATTTCCA
TGACACCTCTCAAAGACGGAACTTTGAGGAAGCGAAAGAAGCCTGCATGAAGGATGGAGGACAG
CTAGCCAGCATAGAAACGGCAGATGAGCAGAGGCTGATAGAGAACTTCATTGAAAGCCTCCAGG
CATCTGATGGTGATTTCTGGATTGGCCTCAAGAGGTTGGAGGAGAAACAGCACAACAGCACAGC
CTGCCAGGACCTTTACGCTTGGACAGATGGAAGCCTGTCACAGTTCAGGAACTGGTATATGGAT
GAGCCTTCCTGTGAGAGCGAGGTCTGCGTGGTCATGTACCATCAGCCATCAGCACCTCCGGGCA
TCGGGGGCCCATATATGTTCCAGTGGAATGACGACCGGTGCAACACGAAGAAGAATTTCATTTG
CAAATATTCTGACGGTGAAGCAACTGAGCCAGCAGCACCCATACTTCCAGAAGAAACTCTGGAA
ATAGACACCAAAGAACGCAGAGAGGCTGCTTTGAATCTTGCCTACATCCTAATTCCCAGTATTC
CCCTTTTCCTCCTACTTGTGGTCACTTCAGCTGTGTGTTGGGTTTGGATCTGTAGAAGAAAACG
GGAACAGACAGACCCTCCCACAAAGGAGCAGCACACCATTTGGCCCACTCCTCACCAAGAGAAC
AGCCCTGACCTAGAAGTTTACAATGTCATCAGAAAACAAAGTGAAGCTGATTTAGCCGAGCCCC
GGCCAGATCTGAAGAACATCTCCTTCCGGGTGTGTTCTGGGGAAGCCATGCCCGATGACACGTC
TTGTGACTATGACAACATGGTTATAAACCCTTCTGAAAGTGGGTTAGTGACTTTGGCAAGTATG
GAGGGTAGATTTGTGACCAATGACATCTATGAATTCTCCCCCGACAGAATGGGGAGGAGCAAGG
AGAGTGGATGGGTAGAAAATGAAATATATTACTAAGACATATGAAAAAACCAGCAAGAATGTAA
AAAGAGAAGGAAAAGCCTCCAATGTCTTACAAAGACGATATTCAGAAGGCTTATGAGAAGGTTC
AGCTCAGGTCTTAGGGGCAAGCACAGCATCACAAGTTCCTTCTGGGTCCCCAAGTTCTGGCTGC
ACTCCCTATCCAGGAACCTCGTCCAGCTCAGCCTGGTCCAAGGCACCTCACCCAAGGGGCTGCT
GCACAGCAGACCCTCAGAGAAAGCCAGTGGCTTCCAACTGACGCTCAAGAGCTGGTGCTTTCCC
TGGTCAGGATTAAGGTGTGACCAGGGAGCTTGGAAAGCCTACCTCTAGGCTCTGTTTTCCTTGC
TCTGTACATCTGTGCAGGCAATCACAAAGACACAAATGGTGGGATCCTCTCAAAGCCTCTGTAT
GGAAGCCCCAGGCTGGCCTGCACATCAACAATTCCCAACCTGCATCCCACCCCCACCCCTGAAA
AAAAAAGTCAATAAAAAGCAGGAAGCAGAATGTTAGTCAGTCTGTGTCTACAGCCCTTCCTCTG
CATGTGGCCTCAGGGGAGTTTTTTTTTTTTTTTTCATTCTCCCAACATCTAAACTTGGAAAAGT
CCAACTTGGAAATACTTTCGAAAGTAAAAATGAGCTCTGTTTGCTTCAGAGCTTCTTCTTCTCT
GGGCTCAGACAGTATGTGCTGTTCTGGGGATGGGTGGCAGCAGCATAGGAAACTGACTGTATAC
AGGACTGGTGAAAAGAGTCGACCTAGTAAGGAAAAGGAGAGGCAGGCTTCTCACTATCAGAGAA
GGCAGCCACGGTCACCAGAAGGGAGGAAACTGGAACAGGTCCTGTTGTGTGCAAGGGGAATCGA
AACAGTGCTGCCGTCATTGTGGAATTTTATGTACTGAGTATACATATATATGTATGTTTATATG
TGTATGTATATGTGTGTTTTCCATTAAATAAGCCAGTACTCCATGAAACTGGATGACTCAAGGA
CAGAAGCAGAAGAAATATGAGTTACTTAAGTAATGAAAAGGAAATAATGGGTATCTAAACATAG
ATAGAATTAACAGGTTTATTGTTCTACAGGAACAATGAGGACCCGGATATCACAATGACCTATA
ACGTATTTATGAATAACTATGAGAAAGGAGCTCAAGGGCAGCAAACACAAAGTCATGATAAAAA
TATATTTATTGCCTTGGTTGACTAGTACACATTGTATATTTGTACTGTTAAGTAATACCATTGT
TAAAACTTAAAGAGATTGGGAATGAGAATGTTCATTTGGGAAATTTTACACCACCACCAAGCAA
GACTGATTAAGAATCAGCAGATAGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCA
GGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAAAAAAAGAGAGAGAGAGAGAGA
AAAAAAAAAGAATCAGCAGATCACAGACACCAACTCGTAATGATCCACCTTTGGTAATGAGGAT
TAATTTGAATATTAAATCATTGAAAGTAAAACCAACAAAGAGAATGTGACTCAATGGGTAAAGT
GGGAAAACATGGGCATATGCTGATACAAAATAAAAGAATAAATTAAAACTTTGATGTAGATGGT
ATATTTACATGATTTCAGGTAAAGATCATTGATTGCAAAAGTGACCCAACAGGCAAAGCCACCT
CAGTCACCTGATGAATGTGAATTCTGTGGACGACGAAGTGTACTGAGATTGTAGACCTCACACT
GTGGTGTGGTGAGAGGGACATGGCATCACATCCACGCTGTCTCACAGTGTACAAGCTGATCATA
AGGAGGCCTTGCATAACAACAATTTGATGGACAATCTACAAACTACCTGGACGGCAAACCTGAA
CTCTGATGGTAAAGACGGTGGAAGCGAGACAGGGGCAGCTGCAATAGGAGGACAGTAAGGTGAT
GGCTCCAAGCGTGACCAGATCCTGAAATGGATCCCTTTTCTCCTGTAAAGGAGAAGATGGGAAC
AAATGTGGATGACGTCTGAGGACTAAATGTCAAAAACGTGCAGTGCTAACTTCCTAACTTTTGC
GTTGCCCTGAGGACATGGCCTCTTGGCACTGGGAATGTCTTCCCAGAAAGCACACAGTGAAGTA
ATAAAGGACAATGGACTATCAGGTTGACCACTTTCTCTCGTGTGATATGGGGACAGGGATGCAC
TGTACCTGCAATCTCTCCTCTGTTAGAAATTATTTTTGGAAAACCATTTACAAACATAATTTCT
ATAGCCATGGATTCCATGACTCACACTATGCTACCCATGCATCTGAAGTCAATATACAGGCTGT
GGCTGATAGCATCTAACAGTCTTTGATCAAAGACAAAAGTAAATGAACTCCTAATAGAACCGTC
CTCAGTACCTAGCCCCAGGTTCTGGCAGGGAGCTGTGATGAGCCAGCCTGCAATATCCAATTCA
GTGACACCTTTCTTCCAATATTCCCCATCTTTCCCCTTTGGAAATGCAAATGAGTTGTGTGATC
TAGAATAAACATCAAGGTGTCTTTCAACTCCAAAATCATTTTATTTCAATATTGTAATAGCTTC
TGTAGAGCATTTGACAGCCTCCTGAACTTGTAGTAAGACACTCATAATAACAGAGACAGATACA
AATATGAAATTGCACGGAATTGCACCCTCAGAGGCAAAGTCATTTTTCTACAGACCTTTGTCTC
TTTCTCCTGAAGACCAGTAAACGGTTACTAATTCCTAACTAATCGTAAGTTACCAGAGAGTCTT
GAGACTGAACATCAGAAAAGGTGACCAGAATGAGTTATCAGGTCAAGAACATGAGGAAAAACAA
GCCTCCCAAAATATAGTAAGGCCAGTTATAAAGTTTTCTAGACATAATGGGCTTATTAAATGGA
CCATAACCTTCAAATAGGTACTTGAATATAAGATAGCATTTCCATATACTAATAAGAAAATTTA
GTCTACCTTAAGGAGCTCAAAGTTAGGGTTGTACTGTTTGTTAAACTCTGTTTTCACAACAGTT
TATAACTGCTCGACAGTAATAGTAAGAAACACCAATGCACTAAGGGCTTAGTCAGGAAACTAGG
GGCTGCTTTAACTTTTTATACCACCAGATGGCAGTAGTAAGATGCCATCAGTTTCTGTCAACTT
CCTACATCTACAGTAAGAAGCAGGCAGGC

hide sequence

RefSeq Acc Id:

XM_039081958 ⟹ XP_038937886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,280,779 (-)	NCBI
mRatBN7.2	8	51,364,562 - 51,384,746 (-)	NCBI

RefSeq Acc Id:

XM_039081959 ⟹ XP_038937887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,280,780 (-)	NCBI
mRatBN7.2	8	51,363,928 - 51,384,746 (-)	NCBI

RefSeq Acc Id:

XM_063265987 ⟹ XP_063122057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,261,325 - 60,280,779 (-)	NCBI

RefSeq Acc Id:

XR_010054013

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,265,617 - 60,280,782 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178926	(Get FASTA)	NCBI Sequence Viewer
	NP_001423481	(Get FASTA)	NCBI Sequence Viewer
	NP_001423482	(Get FASTA)	NCBI Sequence Viewer
	NP_001423483	(Get FASTA)	NCBI Sequence Viewer
	NP_001423484	(Get FASTA)	NCBI Sequence Viewer
	NP_001423485	(Get FASTA)	NCBI Sequence Viewer
	XP_006243111	(Get FASTA)	NCBI Sequence Viewer
	XP_006243114	(Get FASTA)	NCBI Sequence Viewer
	XP_008764550	(Get FASTA)	NCBI Sequence Viewer
	XP_038937886	(Get FASTA)	NCBI Sequence Viewer
	XP_038937887	(Get FASTA)	NCBI Sequence Viewer
	XP_063122057	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95491	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050686
	ENSRNOP00000050686.6
	ENSRNOP00000071344
	ENSRNOP00000071344.2
	ENSRNOP00000104639
	ENSRNOP00000104639.1
	ENSRNOP00000112146
	ENSRNOP00000112146.1

RefSeq Acc Id:

NP_001178926 ⟸ NM_001191997

- UniProtKB:

A6J4G7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQPGAALQAMLLAVLLAKPRDSKGHLLSGDLDPRGGQRFCWEGTRRPCYRVIYFHDTSQRRNFE
EAKEACMKDGGQLASIETADEQRLIENFIESLQASDGDFWIGLKRLEEKQHNSTACQDLYAWTD
GSLSQFRNWYMDEPSCESEVCVVMYHQPSAPPGIGGPYMFQWNDDRCNTKKNFICKYSDDKPST
TPSLSPGGEATEPAAPILPEETLEIDTKERREAALNLAYILIPSIPLFLLLVVTSAVCWVWICR
RKREQTDPPTKEQHTIWPTPHQENSPDLEVYNVIRKQSEADLAEPRPDLKNISFRVCSGEAMPD
DTSCDYDNMVINPSESGLVTLASMEGRFVTNDIYEFSPDRMGRSKESGWVENEIYY

hide sequence

RefSeq Acc Id:

XP_006243111 ⟸ XM_006243049

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQPGAALQAMLLAVLLAKPRDSKGHLLSGQRFCWEGTRRPCYRVIYFHDTSQRRNFEEAKEACM
KDGGQLASIETADEQRLIENFIESLQASDGDFWIGLKRLEEKQHNSTACQDLYAWTDGSLSQFR
NWYMDEPSCESEVCVVMYHQPSAPPGIGGPYMFQWNDDRCNTKKNFICKYSDDKPSTTPSLSPG
GEATEPAAPILPEETLEIDTKERREAALNLAYILIPSIPLFLLLVVTSAVCWVWICRRKREQTD
PPTKEQHTIWPTPHQENSPDLEVYNVIRKQSEADLAEPRPDLKNISFRVCSGEAMPDDTSCDYD
NMVINPSESGLVTLASMEGRFVTNDIYEFSPDRMGRSKESGWVENEIYY

hide sequence

RefSeq Acc Id:

XP_006243114 ⟸ XM_006243052

- Peptide Label:

isoform X6

- Sequence:

show sequence

MVISGLASRGWRRNSTTAQPARTFTLGQMEACHSSGTGIWMSLPVRARSAWSCTISHQHLRASG
AHICSSGMTTGATRRRISFANILTINQVQHPLLVLETSEHVWTTAPSFKFSSPCVSLSGEATEP
AAPILPEETLEIDTKERREAALNLAYILIPSIPLFLLLVVTSAVCWVWICRRKREQTDPPTKEQ
HTIWPTPHQENSPDLEVYNVIRKQSEADLAEPRPDLKNISFRVCSGEAMPDDTSCDYDNMVINP
SESGLVTLASMEGRFVTNDIYEFSPDRMGRSKESGWVENEIYY

hide sequence

RefSeq Acc Id:

XP_008764550 ⟸ XM_008766328

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQPGAALQAMLLAVLLAKPRDSKGHLLSGQRFCWEGTRRPCYRVIYFHDTSQRRNFEEAKEACM
KDGGQLASIETADEQRLIENFIESLQASDGDFWIGLKRLEEKQHNSTACQDLYAWTDGSLSQFR
NWYMDEPSCESEVCVVMYHQPSAPPGIGGPYMFQWNDDRCNTKKNFICKYSDGEATEPAAPILP
EETLEIDTKERREAALNLAYILIPSIPLFLLLVVTSAVCWVWICRRKREQTDPPTKEQHTIWPT
PHQENSPDLEVYNVIRKQSEADLAEPRPDLKNISFRVCSGEAMPDDTSCDYDNMVINPSESGLV
TLASMEGRFVTNDIYEFSPDRMGRSKESGWVENEIYY

hide sequence

Ensembl Acc Id:

ENSRNOP00000050686 ⟸ ENSRNOT00000040162

Ensembl Acc Id:

ENSRNOP00000071344 ⟸ ENSRNOT00000088607

RefSeq Acc Id:	XP_038937887 ⟸ XM_039081959
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038937886 ⟸ XM_039081958
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063122057 ⟸ XM_063265987
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000104639 ⟸ ENSRNOT00000165306

Ensembl Acc Id:

ENSRNOP00000112146 ⟸ ENSRNOT00000156939

Protein Domains

C-type lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z895-F1-model_v2	AlphaFold	D3Z895	1-376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695959

Promoter ID:

EPDNEW_R6484

Type:

initiation region

Name:

Layn_1

Description:

layilin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	55,467,658 - 55,467,718	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564444	AgrOrtholog
BioCyc Gene	G2FUF-30529	BioCyc
Ensembl Genes	ENSRNOG00000011228	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040162	ENTREZGENE
	ENSRNOT00000040162.6	UniProtKB/TrEMBL
	ENSRNOT00000088607	ENTREZGENE
	ENSRNOT00000088607.3	UniProtKB/TrEMBL
	ENSRNOT00000156939	ENTREZGENE
	ENSRNOT00000156939.1	UniProtKB/TrEMBL
	ENSRNOT00000165306	ENTREZGENE
	ENSRNOT00000165306.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
InterPro	C-type_lectin	UniProtKB/TrEMBL
	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin_domain	UniProtKB/TrEMBL
	C-type_lectin_fold	UniProtKB/TrEMBL
NCBI Gene	500996	ENTREZGENE
PANTHER	CHONDROLECTIN	UniProtKB/TrEMBL
	CHONDROLECTIN VARIANT CHODLFDELTAE	UniProtKB/TrEMBL
	LAYILIN	UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/TrEMBL
PhenoGen	Layn	PhenoGen
PROSITE	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011228	RatGTEx
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	C-type_lectin_fold	UniProtKB/TrEMBL
UniProt	A0A0G2K085	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4T7_RAT	UniProtKB/TrEMBL
	A0ABK0LMH2_RAT	UniProtKB/TrEMBL
	A6J4G7	ENTREZGENE, UniProtKB/TrEMBL
	D3Z895	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Layn	layilin	RGD1564444_predicted	similar to layilin (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564444_predicted	similar to layilin (predicted)	LOC500996	similar to layilin	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500996	similar to layilin			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message