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Gene: Dnajc27 (DnaJ heat shock protein family (Hsp40) member C27) Rattus norvegicus

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Symbol:

Dnajc27

Name:

DnaJ heat shock protein family (Hsp40) member C27

RGD ID:

1564414

Description:

Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport and positive regulation of ERK1 and ERK2 cascade. Predicted to be located in nucleus. Orthologous to human DNAJC27 (DnaJ heat shock protein family (Hsp40) member C27); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DnaJ (Hsp40) homolog, subfamily C, member 27; dnaJ homolog subfamily C member 27; rab and DnaJ domain containing; rab and DnaJ domain-containing protein; Rbj

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	32,788,215 - 32,842,418 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	32,788,184 - 32,817,940 (+)	Ensembl				GRCr8
mRatBN7.2	6	27,068,713 - 27,098,449 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	27,068,686 - 27,098,449 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	27,360,999 - 27,390,711 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	27,676,905 - 27,706,613 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	27,154,561 - 27,184,181 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	28,515,054 - 28,544,756 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	28,515,025 - 28,544,790 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	38,321,990 - 38,353,425 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	27,061,135 - 27,087,288 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	26,542,350 - 26,571,926 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

amphetamine (EXP)

aspartame (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenofibrate (ISO)

formaldehyde (ISO)

indometacin (ISO)

monosodium L-glutamate (ISO)

paracetamol (EXP)

PCB138 (ISO)

resorcinol (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IBA)

positive regulation of ERK1 and ERK2 cascade (ISO)

Cellular Component

nucleus (IEA,ISO)

Molecular Function

G protein activity (IEA)

GTP binding (IEA)

GTPase activity (IBA,IEA,ISO)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14980719	PMID:18614015	PMID:24746703

Genomics

Comparative Map Data

Dnajc27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	32,788,215 - 32,842,418 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	32,788,184 - 32,817,940 (+)	Ensembl				GRCr8
mRatBN7.2	6	27,068,713 - 27,098,449 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	27,068,686 - 27,098,449 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	27,360,999 - 27,390,711 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	27,676,905 - 27,706,613 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	27,154,561 - 27,184,181 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	28,515,054 - 28,544,756 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	28,515,025 - 28,544,790 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	38,321,990 - 38,353,425 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	27,061,135 - 27,087,288 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	26,542,350 - 26,571,926 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

DNAJC27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	24,943,636 - 24,972,094 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	24,943,636 - 24,972,094 (-)	Ensembl			hg38	GRCh38
GRCh37	2	25,166,505 - 25,194,963 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	25,020,009 - 25,048,328 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	25,006,881 - 25,035,200 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	24,904,307 - 24,933,051 (-)	NCBI		HuRef
CHM1_1	2	25,095,974 - 25,124,431 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	24,978,367 - 25,006,824 (-)	NCBI		T2T-CHM13v2.0

Dnajc27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	4,132,569 - 4,174,140 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	4,132,583 - 4,160,606 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	4,082,569 - 4,124,140 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	4,082,583 - 4,110,606 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	4,082,612 - 4,110,602 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	4,082,500 - 4,110,490 (+)	NCBI		MGSCv36	mm8
Celera	12	4,011,071 - 4,039,179 (+)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	1.99	NCBI

Dnajc27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	7,044,804 - 7,078,666 (-)	Ensembl
ChiLan1.0	NW_004955469	7,046,671 - 7,078,666 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJC27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	101,553,404 - 101,581,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	101,557,380 - 101,585,791 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	24,937,091 - 24,965,423 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	25,032,836 - 25,061,149 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	25,032,836 - 25,061,149 (-)	Ensembl			panPan2	panpan1.1

DNAJC27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	19,256,483 - 19,287,938 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	19,255,475 - 19,287,929 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	19,153,189 - 19,184,776 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	19,529,443 - 19,560,861 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	19,529,442 - 19,560,699 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	19,265,908 - 19,297,493 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	19,275,403 - 19,307,011 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	19,321,815 - 19,353,404 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dnajc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	63,610,942 - 63,645,852 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	7,193,709 - 7,228,625 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	7,193,726 - 7,225,415 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJC27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	113,816,772 - 113,857,113 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	113,816,718 - 113,857,117 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	121,005,430 - 121,045,814 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJC27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	82,695,889 - 82,725,142 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	82,695,850 - 82,720,956 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	29,441,301 - 29,470,662 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajc27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	7,265,907 - 7,306,822 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624738	7,265,899 - 7,306,848 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dnajc27
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	24,748,733 - 24,777,501 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dnajc27
285 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1075
Count of miRNA genes:	338
Interacting mature miRNAs:	452
Transcripts:	ENSRNOT00000005317
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	22653889	67653889	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	31185002	76185002	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	30937632	75937632	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	22288257	32981219	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	22288257	67288257	Rat

Markers in Region

BI277777

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	27,098,136 - 27,098,310 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	28,544,446 - 28,544,619	NCBI	Rnor6.0
Rnor_5.0	6	38,351,372 - 38,351,545	UniSTS	Rnor5.0
RGSC_v3.4	6	27,090,558 - 27,090,731	UniSTS	RGSC3.4
Celera	6	26,571,616 - 26,571,789	UniSTS
RH 3.4 Map	6	117.59	UniSTS
Cytogenetic Map	6	q14	UniSTS

AI639580

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	32,817,589 - 32,817,673 (+)	Marker Load Pipeline
mRatBN7.2	6	27,098,093 - 27,098,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	28,544,403 - 28,544,485	NCBI	Rnor6.0
Rnor_5.0	6	38,351,329 - 38,351,411	UniSTS	Rnor5.0
RGSC_v3.4	6	27,090,515 - 27,090,597	UniSTS	RGSC3.4
Celera	6	26,571,573 - 26,571,655	UniSTS
Cytogenetic Map	6	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_206845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_354626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY539931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK001286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY314277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005317 ⟹ ENSRNOP00000005317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	32,788,211 - 32,817,940 (+)	Ensembl
mRatBN7.2 Ensembl	6	27,068,737 - 27,098,447 (+)	Ensembl
Rnor_6.0 Ensembl	6	28,515,076 - 28,544,756 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081141 ⟹ ENSRNOP00000071788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	32,788,184 - 32,817,940 (+)	Ensembl
mRatBN7.2 Ensembl	6	27,068,686 - 27,098,449 (+)	Ensembl
Rnor_6.0 Ensembl	6	28,515,106 - 28,544,790 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088033 ⟹ ENSRNOP00000073490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	28,515,025 - 28,541,176 (+)	Ensembl

RefSeq Acc Id:

NM_206845 ⟹ NP_996727

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	32,788,235 - 32,817,943 (+)	NCBI
mRatBN7.2	6	27,068,737 - 27,098,447 (+)	NCBI
Rnor_6.0	6	28,515,076 - 28,544,756 (+)	NCBI
Rnor_5.0	6	38,321,990 - 38,353,425 (+)	NCBI
RGSC_v3.4	6	27,061,135 - 27,087,288 (+)	RGD
Celera	6	26,542,350 - 26,571,926 (+)	NCBI

Sequence:

show sequence

CGCCGCTTCCCAACCGCCCGCGTCCGTCCGCGGCCAGGCAGCGGTGGGGATGGCGAGCCGCGGA
GCCAGGGTGGTGACGAGCGCAGCGGCTCCGTCATTGGGCGAGGAGGCCTGAGGGACGGGCTGGC
TGGGTGCTTAAGGACACCAGAACCCGCGGCCCCAGCAGAGCGAAGGCAATGGAGTCCAACGTGC
CGAAGCGGAAGGAGCCCCTCAAGTCCCTCCGCATCAAAGTCATCTCCATGGGCAACGCCGAAGT
GGGGAAAAGCTGCATTATAAAACGCTACTGTGAGAAGAGATTTGTGTCTAAATACCTGGCCACC
ATTGGGATTGACTATGGAGTCACAAAGGTCCAAGTCAGAGACAGAGAAATCAAAGTTAACATCT
TTGACATGGCTGGACATCCCTTCTTCTTTGAGGTCCGAAATGAATTCTACAAGGACACACAAGG
TGTGATACTGGTCTATGACGTTGGGCAGAAAGACTCATTTGACGCCCTTGATTCATGGCTGGCA
GAAATGAAGCAAGAGCTTGGGCCTCATGGGAACATGGAGAATATTGTCTTTGTTGTATGTGCCA
ACAAGATTGACTGCTCTAAACACCGCTGCATTGATGAAAGTGAGGGGCGTCTCTGGGCTGAAAG
CAGAGGGTTCCTGTACTTTGAAACATCAGCACAGACTGGAGAGGGGATCAACGAGATGTTCCAG
ACCTTTTACATGTCCATAGTTGACTTGTGTGAAAATGGGGGCAAGCGTCCTACCGCAAATAGCA
GTGCTAGCTACACCAAAGAACAAGCGGACACCATTCGCCGAATCCGGACTAGTAAGGACAGCTG
GGAGATGCTGGGAGTCAGACCTGGGGCCTCAAGGGAGGAAGTCAATAAGGCCTACCGGAAGCTG
GCTGTGCTGCTTCACCCAGACAAGTGTGTAGCTCCTGGTAGTGAAGATGCCTTCAAAGCAGTTG
TGAACGCCCGGACAGCTCTCCTGAAAAACATCAAGTAGAGGCAGCGGAAACTACAGGCAAGCTT
AAGTGCAGACAGACTCCCTTTGAGGTGAAATAACCAACATGGAGTTTCCTTCACAAATGCTCAC
TGTTGTGTCCCCTCCCTTGTGTATTAATAGTATGGGTGCCTGTTACCGTGTGGTGGCCATTTCT
CAGTGAGATGACCGATTTTGGGTGAGAGATAGCCTCGCATCTCTTATGCACTTCATAGCTTATT
GCCAGATGACTGGGTGTTTGTCATTGTGTCATCGTTTATGCATTCACCTGAGTCCATGACCATG
ACTCACCTGAGCTTCCTCCCACCAACCCACCACCCGTCCATCTGCCCACCATCAGAGAAGGGAA
TAACAACAGGAAGGAGGATGGCAGGAACTAGCAGTTGGCACCCAGCCCCTGGGAGCCTTGCACG
CTCTGAGCAGTCTCTTGGTTAGTATTTTAACCATCAGCCTACATAGTTAGTAGCCAGGCATGGT
GGCATGTGCCTGTAATCCCAGCACTCAGGAGGATGAGGCAGGAGGATTGTGAGTTTGAAGCCAG
TCTGGATTGGATTATTCAGCAAGACTGTCAAAGAGAAACCAGCACCTTTGTAGAAGATGTGATG
TGAGTTGACACTGTTCTGTCTGCCCGCCCTTCCAGAACACTGACTCTGTTCTTTCTCCAGCCAC
CAGGGGGAGACAAGCCAGTACTAAGAGAGAGGCAGTGCCAGCCACAGGAGCTGGAGACCCTGAA
GCTCATCCTGGATCCCAGGTCTTTACTCTGCCCTAGAAATAGTTGCCACTAGCAGGCAGCAGAG
AATTCTGTGTTCCTGGGAATGAGGGACCAGAAACCAGAACAGAAGCACTCGGAGGGCACGCTGT
AGATTACTCGGGAATGAATGTGTGCTCAGCCAGCTTGGGCTTTTCCTGAGCTCCGGCCTGTTGG
GCACTAAGAAGGGCCTGCCATAAGGCTTGTCCCTGTCCTCAGTCCCCACCACAAGGGCAGGTGA
GAGGCAGGCAGGCGCTCTTCTGCAAGCCGGTCTCTTCCTTCTGCACCCGTGTTAATCTGTTTCT
CCTCTCTTCCTGCTCTGTTGTTACACCCCACATCTGCCATTGCCTTTCTTCTTGAATCCCTGGC
ATTGCCCCGGGCTCAGCTGACTTGAAATAAGTAGGACCCATTTGGGGCACAGTAGGACATCTTG
GGCCTGTGTGGGGCAGAATCCCTACAGTTTCTAAAGTTTCTGCTTGGACTCCAAATTTCTGAAT
AGTATTTTTAAACTACAAGTATGACAGCTGATGTTGCATAGAGAAGCCTTACTCATGGTGTTGT
TCCTGCCTGGTCCACAGGACTGGATGGAGCTGGCGGAGCACTGGGACTCATGTCAGCCTTAGGG
GAGCAGGCCCACTTCTCGATTCCTGTCATCCCTCTTAACTGTGTCTTATTTTGAGCTGCAGCTA
CCTGTGCTACCTGGAACTCAAAGGATGTAAAGCATCACCAGGCTATGACTTTTAAATCCCTACC
CCATAATGGTTGCAGATAACATCTCTCTCACCTAAGAAGACACGCTCTTGTCTTACTGTCTAAA
CACTTGCTGTCTTCTGGGTTTTCTCCTTTCTCCACAGTAGCCTCACCTTGCATGGTGAGTTTAA
AATGTTCTTAATGAACTCAGACCCATATAAAAAAGGTAAAGAGATCTGGTATATGGCTTTATGG
CTTTTTCTAGCCCCTGAATTTGCTTCTGAGATGATTAAACTCCACTTCAACGTTCCTGTGGGTC
TCAGTTCTGCCTGAGGCCTCTCTCACGCCTAACATGTCCGATTGTCCAACTGCTCCTGGAACAG
AAGGTGGGAGTCCTGAGGATGAGGGATTGTGCATGGTGCAGTCAGCCCCAGTGTGGGGCCCCGT
CTTCGCCTCATTCAGCGACATGGGCAGCTGAGCAGTTACGGCAGGACACTTTCCCACTCATATC
CCTCCCTGCTGATGTGGTCTCTGCTTCATTCTTAGATCTTGAGACTCTGTTTCTGACATCTTAG
TTACTAACATTTAGGGTGGCTACATAGTATTTATTTATTTATGTAATAGTAATAAAATGAAAAA
GTTAAGTCTCAGGGTCCCAGAATTTTTCTGATTTCTATAATCCATCAGCAGAGCATTAAGAAAC
AACAGAGCATGCCTCCAGATGTAAAGTGTTTTGAGTCCTGGCTTCACGATCCGGTACAGACCTC
TCCGTTCATTTAAACTCTCAGTGCAGGCGTGTGCTTTGTCGTTCCACATTTTGAAAACTATTTG
CACAGTTGAGATCTTAGACCATCAGCAGGAGTTGCAACTCAGTCATTTCAGTGGCTGAGAATTT
GTTTATAAATAACCTTGTTTCCCAAAAAAAGGGTTAAAATATTTGAACAACTGTTATTAAAGAA
AGCTGTGTCCTCCTCCACCTGAGTCACCAACCAGTGTCACCTCTTCACCTTGTTGGGAATGTCT
GGAGGCATTTCAGAGTTGGTCTTCCAACCTTCGCAAGCACTTTAGATCCCCCTCCCTTTGTGTC
TGTGTTCTCTTGTGCCTCCTTGGGAACTGCTAGTCCTCACTCTCAGTATCTGACTTAAGCACTG
CCACTTTACTTCTCCATTTAAATGTGTCTGTGGCTTTACCAGCCTGTTAACTTACGAGTCCAGA
TGTTGAGGATAAGATGCTGTCCTTCTATAAACTGTACACCATTCTTTAAGGCTTGTATTTACTC
AGGAAACGTATTCTAGTATCTTCTCACTGATTGAAATCTCAAGTGACAAATACTTCTTTATACC
TGCAAAATGGTACCTAATTCCTTCTTAGTTCATGAGCCATAGGTCAGGCAGCTAGATGGTCAGT
GAGCCATAGGTCCGGTGGCTAGATGGCTGAAACCTTCGTCAGAGTAGAACAAGGAGCTCCTGCC
AGCACTGAGTCAGGGACAAATGGCTGTTCCACCCAGAGTGGCAGGAGGACAGGCTTGCCATCTG
AAGCTAGGAAGCAAGGAGCTGGCATGTTGTCTCTAGCAATGACAATGCTCCCTCCTGGGTCAGC
TCAGAAGGTTCTGGAACCGTGCTTCTCTCATACTCAGCCCATGGAGCTAAGGCCCCAGCAGTTT
TCTAAAACTTTCAAAGATGAATTTAGTTGCAAAATCAAGCTAAGCAATTTCCACTGCAGGCTTT
ACAAAGAGCTGTTGGTCCTCTCATCCTGGTGCTGAGCACAATTTTAGACATGGTTAGTGCCCCT
TGGACATTGATTGCTCCATTAACTGTCCCTGGGGAGGATGAAGGTGTTTACTTGTGGTATGGGC
GCAGTGGGTCTGTGTCTTAATGCACAGTGCGGTGCTGGGCACGCTGGGAAAGGCCCTGGGTGAA
AGGGCTGTTACTGAAGAGCTGGACAGTTTGGGTTTGATCACTCCCCGTGCTGATCGCCCCCTCG
CATTCTTTCCCTTGACTGTGAATGCTCTTACAAGGTAATTTACATATTTGCTTTCTGTTGAAAT
AACTGAAAGTGTTAAATCTACCAGTTGTGTATGTCTTGTATACAGAGTGTCATATGTATTAAGT
TGTGTATTTTTATAGAGTAAAGTCAAATAGCAAA

hide sequence

RefSeq Acc Id:

XM_039111917 ⟹ XP_038967845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	32,788,215 - 32,817,945 (+)	NCBI
mRatBN7.2	6	27,068,713 - 27,098,449 (+)	NCBI

RefSeq Acc Id:

XR_010052060

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	32,788,215 - 32,842,418 (+)	NCBI

RefSeq Acc Id:

XR_354626

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	32,788,215 - 32,817,945 (+)	NCBI
mRatBN7.2	6	27,068,713 - 27,098,447 (+)	NCBI
Rnor_6.0	6	28,515,054 - 28,544,756 (+)	NCBI
Rnor_5.0	6	38,321,990 - 38,353,425 (+)	NCBI

Sequence:

show sequence

ACTCCGCTCGCCCTCCGCGGCTCGCCGCTTCCCAACCGCCCGCGTCCGTCCGCGGCCAGGCAGC
GGTGGGGATGGCGAGCCGCGGAGCCAGGGTGGTGACGAGCGCAGCGGCTCCGTCATTGGGCGAG
GAGGCCTGAGGGACGGGCTGGCTGGGTGCTTAAGGACACCAGAACCCGCGGCCCCAGCAGAGCG
AAGGCAATGGAGTCCAACGTGCCGAAGCGGAAGGAGCCCCTCAAGTCCCTCCGCATCAAAGTCA
TCTCCATGGGCAACGCCGAAGTGGGGAAAAGCTGCATTATAAAACGCTACTGTGAGAAGAGATT
TGTGTCTAAATACCTGGCCACCATTGGGATTGACTATGGAGTCACAAAGGTCCAAGTCAGAGAC
AGAGAAATCAAAGTTAACATCTTTGACATGGCTGGACATCCCTTCTTCTTTGAGGTCCGAAATG
AATTCTACAAGGACACACAAGGTGTGATACTGGTCTATGACGTTGGGCAGAAAGACTCATTTGA
CGCCCTTGATTCATGGCTGGCAGAAATGAAGCAAGAGCTTGGGCCTCATGGGAACATGGAGAAT
ATTGTCTTTGTTGTATGTGCCAACAAGATTGACTGCTCTAAACACCGCTGCATTGATGAAAGTG
AGGGGCGTCTCTGGGCTGAAAGCAGAGGGTTCCTGTACTTTGAAACATCAGCACAGACTGGAGA
GGGGATCAACGAGATGTTCCAGACCTTTTACATGTCCATAGTTGACTTGTGTGAAAATGGGGGC
AAGCGTCCTACCGCAAATAGCAGTGCTAGCTACACCAAAGAACAAGCGGACACCATTCGCCGAA
TCCGGACTAGTAAGGACAGCTGGGAGATGCTGGGAGTCAGACCTGGGGCCTCAAGGGAGGAAGT
CAATAAGGCCTACCGGAAGCTGGCTGTGCTGCTTCACCCAGACAAGTGTGTAGCTCCTGGTAGT
GAAGATGCCTTCAAAGCAGTTGTGAACGCCCGGACAGCTCTCCTGAAAAACATCAAGTAGAGGC
AGCGGAAACTACAGGCAAGCTTAAGTGCAGACAGACTCCCTTTGAGCCACCAGGGGGAGACAAG
CCAGTACTAAGAGAGAGGCAGTGCCAGCCACAGGAGCTGGAGACCCTGAAGCTCATCCTGGATC
CCAGGTCTTTACTCTGCCCTAGAAATAGTTGCCACTAGCAGGCAGCAGAGAATTCTGTGTTCCT
GGGAATGAGGGACCAGAAACCAGAACAGAAGCACTCGGAGGGCACGCTGTAGATTACTCGGGAA
TGAATGTGTGCTCAGCCAGCTTGGGCTTTTCCTGAGCTCCGGCCTGTTGGGCACTAAGAAGGGC
CTGCCATAAGGCTTGTCCCTGTCCTCAGTCCCCACCACAAGGGCAGGTGAGAGGCAGGCAGGCG
CTCTTCTGCAAGCCGGTCTCTTCCTTCTGCACCCGTGTTAATCTGTTTCTCCTCTCTTCCTGCT
CTGTTGTTACACCCCACATCTGCCATTGCCTTTCTTCTTGAATCCCTGGCATTGCCCCGGGCTC
AGCTGACTTGAAATAAGTAGGACCCATTTGGGGCACAGTAGGACATCTTGGGCCTGTGTGGGGC
AGAATCCCTACAGTTTCTAAAGTTTCTGCTTGGACTCCAAATTTCTGAATAGTATTTTTAAACT
ACAAGTATGACAGCTGATGTTGCATAGAGAAGCCTTACTCATGGTGTTGTTCCTGCCTGGTCCA
CAGGACTGGATGGAGCTGGCGGAGCACTGGGACTCATGTCAGCCTTAGGGGAGCAGGCCCACTT
CTCGATTCCTGTCATCCCTCTTAACTGTGTCTTATTTTGAGCTGCAGCTACCTGTGCTACCTGG
AACTCAAAGGATGTAAAGCATCACCAGGCTATGACTTTTAAATCCCTACCCCATAATGGTTGCA
GATAACATCTCTCTCACCTAAGAAGACACGCTCTTGTCTTACTGTCTAAACACTTGCTGTCTTC
TGGGTTTTCTCCTTTCTCCACAGTAGCCTCACCTTGCATGGTGAGTTTAAAATGTTCTTAATGA
ACTCAGACCCATATAAAAAAGGTAAAGAGATCTGGTATATGGCTTTATGGCTTTTTCTAGCCCC
TGAATTTGCTTCTGAGATGATTAAACTCCACTTCAACGTTCCTGTGGGTCTCAGTTCTGCCTGA
GGCCTCTCTCACGCCTAACATGTCCGATTGTCCAACTGCTCCTGGAACAGAAGGTGGGAGTCCT
GAGGATGAGGGATTGTGCATGGTGCAGTCAGCCCCAGTGTGGGGCCCCGTCTTCGCCTCATTCA
GCGACATGGGCAGCTGAGCAGTTACGGCAGGACACTTTCCCACTCATATCCCTCCCTGCTGATG
TGGTCTCTGCTTCATTCTTAGATCTTGAGACTCTGTTTCTGACATCTTAGTTACTAACATTTAG
GGTGGCTACATAGTATTTATTTATTTATGTAATAGTAATAAAATGAAAAAGTTAAGTCTCAGGG
TCCCAGAATTTTTCTGATTTCTATAATCCATCAGCAGAGCATTAAGAAACAACAGAGCATGCCT
CCAGATGTAAAGTGTTTTGAGTCCTGGCTTCACGATCCGGTACAGACCTCTCCGTTCATTTAAA
CTCTCAGTGCAGGCGTGTGCTTTGTCGTTCCACATTTTGAAAACTATTTGCACAGTTGAGATCT
TAGACCATCAGCAGGAGTTGCAACTCAGTCATTTCAGTGGCTGAGAATTTGTTTATAAATAACC
TTGTTTCCCAAAAAAAGGGTTAAAATATTTGAACAACTGTTATTAAAGAAAGCTGTGTCCTCCT
CCACCTGAGTCACCAACCAGTGTCACCTCTTCACCTTGTTGGGAATGTCTGGAGGCATTTCAGA
GTTGGTCTTCCAACCTTCGCAAGCACTTTAGATCCCCCTCCCTTTGTGTCTGTGTTCTCTTGTG
CCTCCTTGGGAACTGCTAGTCCTCACTCTCAGTATCTGACTTAAGCACTGCCACTTTACTTCTC
CATTTAAATGTGTCTGTGGCTTTACCAGCCTGTTAACTTACGAGTCCAGATGTTGAGGATAAGA
TGCTGTCCTTCTATAAACTGTACACCATTCTTTAAGGCTTGTATTTACTCAGGAAACGTATTCT
AGTATCTTCTCACTGATTGAAATCTCAAGTGACAAATACTTCTTTATACCTGCAAAATGGTACC
TAATTCCTTCTTAGTTCATGAGCCATAGGTCAGGCAGCTAGATGGTCAGTGAGCCATAGGTCCG
GTGGCTAGATGGCTGAAACCTTCGTCAGAGTAGAACAAGGAGCTCCTGCCAGCACTGAGTCAGG
GACAAATGGCTGTTCCACCCAGAGTGGCAGGAGGACAGGCTTGCCATCTGAAGCTAGGAAGCAA
GGAGCTGGCATGTTGTCTCTAGCAATGACAATGCTCCCTCCTGGGTCAGCTCAGAAGGTTCTGG
AACCGTGCTTCTCTCATACTCAGCCCATGGAGCTAAGGCCCCAGCAGTTTTCTAAAACTTTCAA
AGATGAATTTAGTTGCAAAATCAAGCTAAGCAATTTCCACTGCAGGCTTTACAAAGAGCTGTTG
GTCCTCTCATCCTGGTGCTGAGCACAATTTTAGACATGGTTAGTGCCCCTTGGACATTGATTGC
TCCATTAACTGTCCCTGGGGAGGATGAAGGTGTTTACTTGTGGTATGGGCGCAGTGGGTCTGTG
TCTTAATGCACAGTGCGGTGCTGGGCACGCTGGGAAAGGCCCTGGGTGAAAGGGCTGTTACTGA
AGAGCTGGACAGTTTGGGTTTGATCACTCCCCGTGCTGATCGCCCCCTCGCATTCTTTCCCTTG
ACTGTGAATGCTCTTACAAGGTAATTTACATATTTGCTTTCTGTTGAAATAACTGAAAGTGTTA
AATCTACCAGTTGTGTATGTCTTGTATACAGAGTGTCATATGTATTAAGTTGTGTATTTTTATA
GAGTAAAGTCAAATAGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_996727	(Get FASTA)	NCBI Sequence Viewer
	XP_038967845	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS66271	(Get FASTA)	NCBI Sequence Viewer
	DAA01325	(Get FASTA)	NCBI Sequence Viewer
	EDM03025	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005317
	ENSRNOP00000005317.2
GenBank Protein	Q6IML7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_996727 ⟸ NM_206845

- UniProtKB:

Q6IML7 (UniProtKB/Swiss-Prot), A6HAH0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESNVPKRKEPLKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDRE
IKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIV
FVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYMSIVDLCENGGKR
PTANSSASYTKEQADTIRRIRTSKDSWEMLGVRPGASREEVNKAYRKLAVLLHPDKCVAPGSED
AFKAVVNARTALLKNIK

hide sequence

Ensembl Acc Id:

ENSRNOP00000005317 ⟸ ENSRNOT00000005317

Ensembl Acc Id:

ENSRNOP00000071788 ⟸ ENSRNOT00000081141

Ensembl Acc Id:

ENSRNOP00000073490 ⟸ ENSRNOT00000088033

RefSeq Acc Id:	XP_038967845 ⟸ XM_039111917
- Peptide Label:	isoform X1
- UniProtKB:	Q6IML7 (UniProtKB/Swiss-Prot), A6HAH0 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6IML7-F1-model_v2	AlphaFold	Q6IML7	1-273	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694471

Promoter ID:

EPDNEW_R4995

Type:

initiation region

Name:

Dnajc27_1

Description:

DnaJ heat shock protein family member C27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	28,515,095 - 28,515,155	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564414	AgrOrtholog
BioCyc Gene	G2FUF-38281	BioCyc
Ensembl Genes	ENSRNOG00000003988	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005317	ENTREZGENE
	ENSRNOT00000005317.6	UniProtKB/Swiss-Prot
	ENSRNOT00000081141	ENTREZGENE
Gene3D-CATH	1.10.287.110	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	DnaJ_domain	UniProtKB/Swiss-Prot
	J_dom_sf	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot
	Small_GTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:298859	UniProtKB/Swiss-Prot
NCBI Gene	298859	ENTREZGENE
PANTHER	RAB FAMILY	UniProtKB/Swiss-Prot
	RAB FAMILY	UniProtKB/Swiss-Prot
Pfam	DnaJ	UniProtKB/Swiss-Prot
	Ras	UniProtKB/Swiss-Prot
PhenoGen	Dnajc27	PhenoGen
PRINTS	JDOMAIN	UniProtKB/Swiss-Prot
	RASTRNSFRMNG	UniProtKB/Swiss-Prot
PROSITE	DNAJ_2	UniProtKB/Swiss-Prot
	RAB	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003988	RatGTEx
SMART	DnaJ	UniProtKB/Swiss-Prot
	RAB	UniProtKB/Swiss-Prot
	RAS	UniProtKB/Swiss-Prot
	RHO	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46565	UniProtKB/Swiss-Prot
	SSF52540	UniProtKB/Swiss-Prot
UniProt	A6HAH0	ENTREZGENE, UniProtKB/TrEMBL
	DJC27_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6QI28_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Dnajc27	DnaJ heat shock protein family (Hsp40) member C27	Dnajc27	DnaJ (Hsp40) homolog, subfamily C, member 27	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Dnajc27	DnaJ (Hsp40) homolog, subfamily C, member 27	Rbj	rab and DnaJ domain containing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Rbj	rab and DnaJ domain containing	Rbj	RBJ protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Rbj	RBJ protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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