Rnf183 (ring finger protein 183) - Rat Genome Database

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Gene: Rnf183 (ring finger protein 183) Rattus norvegicus
Analyze
Symbol: Rnf183
Name: ring finger protein 183
RGD ID: 1564412
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; protein ubiquitination; and response to endoplasmic reticulum stress. Predicted to be located in cis-Golgi network membrane; endoplasmic reticulum; and lysosomal membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RNF183 (ring finger protein 183); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF183; LOC500474; RGD1564412; similar to novel protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,892,683 - 80,914,037 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,892,190 - 80,902,196 (-)EnsemblGRCr8
mRatBN7.2575,877,111 - 75,886,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,876,003 - 75,886,191 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd580,935,615 - 80,938,119 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive582,601,862 - 82,604,366 (-)NCBILyon_Normotensive
Lyon_Hypertensive581,823,696 - 81,826,200 (-)NCBILyon_Hypertensive
F344_StmMcwi575,694,677 - 75,697,181 (-)NCBIF344_StmMcwi
Rnor_6.0578,283,722 - 78,292,729 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,284,879 - 78,285,451 (-)Ensemblrn6Rnor6.0
Rnor_5.0582,404,157 - 82,411,971 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,421,051 - 79,422,082 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,818,014 - 74,828,317 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26567849   PMID:29300766   PMID:29507230  


Genomics

Comparative Map Data
Rnf183
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,892,683 - 80,914,037 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,892,190 - 80,902,196 (-)EnsemblGRCr8
mRatBN7.2575,877,111 - 75,886,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,876,003 - 75,886,191 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd580,935,615 - 80,938,119 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive582,601,862 - 82,604,366 (-)NCBILyon_Normotensive
Lyon_Hypertensive581,823,696 - 81,826,200 (-)NCBILyon_Hypertensive
F344_StmMcwi575,694,677 - 75,697,181 (-)NCBIF344_StmMcwi
Rnor_6.0578,283,722 - 78,292,729 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,284,879 - 78,285,451 (-)Ensemblrn6Rnor6.0
Rnor_5.0582,404,157 - 82,411,971 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,421,051 - 79,422,082 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,818,014 - 74,828,317 (-)NCBICelera
Cytogenetic Map5q24NCBI
RNF183
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,297,093 - 113,303,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,297,093 - 113,303,376 (-)Ensemblhg38GRCh38
GRCh379116,059,373 - 116,065,656 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,099,194 - 115,101,141 (-)NCBIBuild 36Build 36hg18NCBI36
Celera986,706,988 - 86,708,935 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,666,759 - 85,668,706 (-)NCBIHuRef
CHM1_19116,206,059 - 116,208,006 (-)NCBICHM1_1
T2T-CHM13v2.09125,495,894 - 125,502,177 (-)NCBIT2T-CHM13v2.0
Rnf183
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,345,777 - 62,353,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,345,777 - 62,353,489 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38462,427,540 - 62,435,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,427,540 - 62,435,252 (-)Ensemblmm10GRCm38
MGSCv37462,088,576 - 62,095,760 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36461,913,903 - 61,921,087 (-)NCBIMGSCv36mm8
Celera461,097,549 - 61,104,733 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.13NCBI
Rnf183
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,181,073 - 14,189,230 (+)Ensembl
ChiLan1.0NW_00495541914,181,073 - 14,189,230 (+)NCBIChiLan1.0ChiLan1.0
RNF183
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,066,390 - 26,079,871 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,068,749 - 26,080,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,396,738 - 84,404,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,769,343 - 112,775,493 (-)NCBIPanPan1.1PanPan1.1panPan2
RNF183
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,660,593 - 67,669,633 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1166,065,391 - 66,073,889 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01168,785,464 - 68,793,963 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,786,988 - 68,787,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,303,061 - 67,311,559 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,324,983 - 67,333,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,071,034 - 68,079,532 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf183
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,963,085 - 182,967,424 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559302,045 - 302,623 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936559302,015 - 302,757 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF183
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,925,677 - 253,933,791 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11253,924,122 - 253,966,702 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,680,570 - 284,687,132 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF183
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,267,718 - 26,274,299 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,273,182 - 26,273,760 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603516,527,204 - 16,528,595 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf183
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,795,464 - 21,802,952 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476021,795,690 - 21,802,691 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf183
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1191,107,043 - 91,108,075 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf183
166 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:138
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000019924
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
AI233737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2575,879,501 - 75,879,646 (+)MAPPERmRatBN7.2
Rnor_6.0578,286,816 - 78,286,960NCBIRnor6.0
Rnor_5.0582,406,548 - 82,406,692UniSTSRnor5.0
RGSC_v3.4579,423,447 - 79,423,591UniSTSRGSC3.4
Celera574,821,108 - 74,821,252UniSTS
RH 3.4 Map5560.4UniSTS
Cytogenetic Map5q24UniSTS
RH133265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2575,877,224 - 75,877,405 (+)MAPPERmRatBN7.2
Rnor_6.0578,284,539 - 78,284,719NCBIRnor6.0
Rnor_5.0582,404,271 - 82,404,451UniSTSRnor5.0
RGSC_v3.4579,421,170 - 79,421,350UniSTSRGSC3.4
Celera574,818,831 - 74,819,011UniSTS
RH 3.4 Map5558.1UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 2 17 115 45 53 27 39 27 6 190 70 7 99 79 86 26 10 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019924   ⟹   ENSRNOP00000019924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,892,203 - 80,894,875 (-)Ensembl
mRatBN7.2 Ensembl575,876,565 - 75,879,081 (-)Ensembl
Rnor_6.0 Ensembl578,284,879 - 78,285,451 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097723   ⟹   ENSRNOP00000085443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,892,190 - 80,902,196 (-)Ensembl
mRatBN7.2 Ensembl575,876,003 - 75,886,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099539   ⟹   ENSRNOP00000097854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,892,190 - 80,902,196 (-)Ensembl
mRatBN7.2 Ensembl575,876,365 - 75,886,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099812   ⟹   ENSRNOP00000087874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,892,197 - 80,902,196 (-)Ensembl
mRatBN7.2 Ensembl575,876,003 - 75,885,888 (-)Ensembl
RefSeq Acc Id: NM_001431214   ⟹   NP_001418143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd580,935,615 - 80,938,119 (-)NCBI
Lyon_Normotensive582,601,862 - 82,604,366 (-)NCBI
Lyon_Hypertensive581,823,696 - 81,826,200 (-)NCBI
F344_StmMcwi575,694,677 - 75,697,181 (-)NCBI
RefSeq Acc Id: XM_063288535   ⟹   XP_063144605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,892,683 - 80,914,037 (-)NCBI
RefSeq Acc Id: XM_063288536   ⟹   XP_063144606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,892,683 - 80,901,379 (-)NCBI
RefSeq Acc Id: XM_063288537   ⟹   XP_063144607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,892,683 - 80,896,029 (-)NCBI
Ensembl Acc Id: ENSRNOP00000019924   ⟸   ENSRNOT00000019924
Ensembl Acc Id: ENSRNOP00000097854   ⟸   ENSRNOT00000099539
Ensembl Acc Id: ENSRNOP00000085443   ⟸   ENSRNOT00000097723
Ensembl Acc Id: ENSRNOP00000087874   ⟸   ENSRNOT00000099812
RefSeq Acc Id: XP_063144605   ⟸   XM_063288535
- Peptide Label: isoform X1
- UniProtKB: D4A718 (UniProtKB/TrEMBL),   A6J7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144606   ⟸   XM_063288536
- Peptide Label: isoform X1
- UniProtKB: D4A718 (UniProtKB/TrEMBL),   A6J7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144607   ⟸   XM_063288537
- Peptide Label: isoform X2
- UniProtKB: A0A8I6B6E7 (UniProtKB/TrEMBL),   A6J7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001418143   ⟸   NM_001431214
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A718-F1-model_v2 AlphaFold D4A718 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564412 AgrOrtholog
BioCyc Gene G2FUF-41097 BioCyc
Ensembl Genes ENSRNOG00000014861 Ensembl
  ENSRNOG00000064866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019924 ENTREZGENE
  ENSRNOT00000019924.6 UniProtKB/TrEMBL
  ENSRNOT00000097723.2 UniProtKB/TrEMBL
  ENSRNOT00000099539.2 UniProtKB/TrEMBL
  ENSRNOT00000099812 ENTREZGENE
  ENSRNOT00000099812.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RING_finger_E3_ubiq-ligases UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 500474 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF183 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PhenoGen Rnf183 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014861 RatGTEx
  ENSRNOG00000064866 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6B6E7 ENTREZGENE, UniProtKB/TrEMBL
  A6J7U6 ENTREZGENE, UniProtKB/TrEMBL
  D4A718 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rnf183  ring finger protein 183  Rnf183  ring finger protein 183  Data merged from RGD:149736475 737654 PROVISIONAL
2021-08-09 Rnf183  ring finger protein 183      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-03-06 Rnf183  ring finger protein 183  RGD1564412_predicted  similar to novel protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564412_predicted  similar to novel protein (predicted)  LOC500474  similar to novel protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500474  similar to novel protein      Symbol and Name status set to provisional 70820 PROVISIONAL