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Gene: Zscan20 (zinc finger and SCAN domain containing 20) Rattus norvegicus

Analyze

Symbol:

Zscan20

Name:

zinc finger and SCAN domain containing 20

RGD ID:

1562996

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZSCAN20 (zinc finger and SCAN domain containing 20); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500549; RGD1562996; similar to Zfp31 protein; zinc finger and SCAN domain-containing protein 20; zinc finger and SCAN domains 20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,214,023 - 146,240,678 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	146,215,082 - 146,240,777 (-)	Ensembl				GRCr8
mRatBN7.2	5	140,926,596 - 140,956,285 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	140,930,689 - 140,956,336 (-)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	5	145,840,297 - 145,866,896 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	147,819,645 - 147,846,202 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	147,005,190 - 147,031,789 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	140,585,916 - 140,612,473 (-)	NCBI		F344_StmMcwi
Rnor_6.0	5	146,760,822 - 146,788,945 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	146,762,683 - 146,787,676 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	150,499,839 - 150,527,856 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	147,812,430 - 147,831,362 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	139,413,972 - 139,442,095 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

acrylamide (ISO)

amiodarone (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bucladesine (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

CU-O LINKAGE (ISO)

DDE (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

FR900359 (ISO)

gentamycin (EXP)

medroxyprogesterone acetate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

pentanal (ISO)

SB 431542 (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zscan20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,214,023 - 146,240,678 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	146,215,082 - 146,240,777 (-)	Ensembl				GRCr8
mRatBN7.2	5	140,926,596 - 140,956,285 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	140,930,689 - 140,956,336 (-)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	5	145,840,297 - 145,866,896 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	147,819,645 - 147,846,202 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	147,005,190 - 147,031,789 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	140,585,916 - 140,612,473 (-)	NCBI		F344_StmMcwi
Rnor_6.0	5	146,760,822 - 146,788,945 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	146,762,683 - 146,787,676 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	150,499,839 - 150,527,856 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	147,812,430 - 147,831,362 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	139,413,972 - 139,442,095 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ZSCAN20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	33,472,645 - 33,501,643 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	33,472,597 - 33,501,643 (+)	Ensembl			hg38	GRCh38
GRCh37	1	33,938,246 - 33,967,243 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	33,710,819 - 33,734,582 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	33,607,351 - 33,631,086	NCBI
Celera	1	32,210,051 - 32,233,817 (+)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	32,054,445 - 32,078,199 (+)	NCBI		HuRef
CHM1_1	1	34,053,603 - 34,077,368 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	33,334,198 - 33,363,244 (+)	NCBI		T2T-CHM13v2.0

Zscan20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	128,472,142 - 128,503,933 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	128,477,332 - 128,503,891 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	128,578,670 - 128,610,153 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	128,583,539 - 128,610,098 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	128,260,783 - 128,287,342 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,085,843 - 128,092,266 (-)	NCBI		MGSCv36	mm8
Celera	4	126,915,182 - 126,941,927 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.04	NCBI

Zscan20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,648,123 - 11,662,027 (+)	Ensembl
ChiLan1.0	NW_004955452	11,641,089 - 11,662,453 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZSCAN20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	193,322,477 - 193,354,169 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	192,444,619 - 192,476,311 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	32,758,663 - 32,787,745 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	33,943,212 - 33,967,139 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	33,943,212 - 33,967,134 (+)	Ensembl			panPan2	panpan1.1

ZSCAN20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	67,939,840 - 67,959,524 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	67,939,744 - 67,953,209 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	64,518,018 - 64,537,695 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	68,500,582 - 68,520,249 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	68,500,503 - 68,520,254 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,313,370 - 65,333,044 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,336,577 - 66,356,245 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,327,928 - 67,347,850 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zscan20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	50,463,362 - 50,483,339 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	16,295,643 - 16,308,125 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	16,288,205 - 16,308,121 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZSCAN20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	89,732,654 - 89,754,719 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	89,732,566 - 89,760,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	83,826,342 - 83,848,474 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZSCAN20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	99,380,756 - 99,405,191 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	99,381,677 - 99,404,730 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	17,289,981 - 17,319,204 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zscan20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	16,558,679 - 16,574,789 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	16,552,133 - 16,575,672 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zscan20
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	29,534,928 - 29,555,685 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zscan20
112 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	64
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000008887
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

AI070471

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	140,947,633 - 140,947,823 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	146,778,827 - 146,779,016	NCBI	Rnor6.0
Rnor_5.0	5	150,517,844 - 150,518,033	UniSTS	Rnor5.0
RGSC_v3.4	5	147,828,531 - 147,828,720	UniSTS	RGSC3.4
Celera	5	139,431,977 - 139,432,166	UniSTS
RH 3.4 Map	5	939.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH140176

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	146,206,458 - 146,206,789 (+)	Marker Load Pipeline
mRatBN7.2	5	140,922,062 - 140,922,393 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	146,753,258 - 146,753,588	NCBI	Rnor6.0
Rnor_5.0	5	150,492,275 - 150,492,605	UniSTS	Rnor5.0
RGSC_v3.4	5	147,802,962 - 147,803,292	UniSTS	RGSC3.4
Celera	5	139,406,408 - 139,406,738	UniSTS
RH 3.4 Map	5	939.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

AW535545

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	140,929,701 - 140,929,868 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	146,760,895 - 146,761,061	NCBI	Rnor6.0
Rnor_5.0	5	150,499,912 - 150,500,078	UniSTS	Rnor5.0
RGSC_v3.4	5	147,810,599 - 147,810,765	UniSTS	RGSC3.4
Celera	5	139,414,045 - 139,414,211	UniSTS
RH 3.4 Map	5	944.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	89	59	6	353	189	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001059988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_575911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008887 ⟹ ENSRNOP00000008887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	146,215,082 - 146,240,777 (-)	Ensembl
mRatBN7.2 Ensembl	5	140,930,689 - 140,956,336 (-)	Ensembl
Rnor_6.0 Ensembl	5	146,762,683 - 146,787,676 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157762 ⟹ ENSRNOP00000099859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	146,216,098 - 146,235,561 (-)	Ensembl

RefSeq Acc Id:

NM_001431230 ⟹ NP_001418159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	5	145,840,297 - 145,866,896 (-)	NCBI
Lyon_Normotensive	5	147,819,645 - 147,846,202 (-)	NCBI
Lyon_Hypertensive	5	147,005,190 - 147,031,789 (-)	NCBI
F344_StmMcwi	5	140,585,916 - 140,612,473 (-)	NCBI

RefSeq Acc Id:

NM_001431231 ⟹ NP_001418160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	5	145,840,297 - 145,866,896 (-)	NCBI
Lyon_Normotensive	5	147,819,645 - 147,846,202 (-)	NCBI
Lyon_Hypertensive	5	147,005,190 - 147,031,789 (-)	NCBI
F344_StmMcwi	5	140,585,916 - 140,612,473 (-)	NCBI

RefSeq Acc Id:

NM_001431232 ⟹ NP_001418161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	5	145,856,865 - 145,866,896 (-)	NCBI
Lyon_Normotensive	5	147,836,227 - 147,846,202 (-)	NCBI
Lyon_Hypertensive	5	147,021,758 - 147,031,789 (-)	NCBI
F344_StmMcwi	5	140,602,498 - 140,612,473 (-)	NCBI

RefSeq Acc Id:

XM_008764178 ⟹ XP_008762400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,214,023 - 146,240,678 (-)	NCBI
mRatBN7.2	5	140,926,596 - 140,956,285 (-)	NCBI
Rnor_6.0	5	146,760,822 - 146,787,327 (-)	NCBI

Sequence:

show sequence

CTGGGTGGCGGATGGGGTGCAGCTGAGACTCAGGCGCTGGGCTGGAGGCTTTGGAGTCTTGGGG
AGCAGTCCCTCCCAAGAAGTACACATCGTCAATGCAGGAAGCCACCGGATGAGGACGACCCTGC
TAAAGTGGAGCATCCAGGCCAGATGATGGCTGTGGCCTCGCCCCCGCCCGAGCCGGAAGACCTC
CTTATCGTGAAGCTGGAGGAGGACTCGTGGGGATCACGCTCCAGGCCTGAGGAGAGCAGCCATA
GCTCTGTCCCTGGCCCCGAAGTTTCCCGCCTGTGTTTCAGGCAGTTCCAGTACCAGGATGCGGC
TGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGACCTGAGCTT
CGCCTGAAAGAACAGATTCTGGAGCTGTTGGTGCTGGAGCAGTTCCTATCTATCTTACCCAGGG
AGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGA
GGATTGGCACCGAGAGGCCTGGGCTGCTGGACAGCAGGGTCTGGAGCTGTGCACTGAAGACACC
AGGTCCTTTGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGGCCCACTGCTCTG
AGAGACAGCCCCAGAAACAGAGGGTGGAGAAGACACATCCTGGCCTTTCCAAGATGCCACCTGA
GTCCTTGAAAGAGAGTGCTGTCTTCACACCCCAAGCCCCAAGTGTTCCAAAGATGGCGAGCGCT
GGAGATTGGGAGATGGCAGCCAAGTCCCAGGAAACCCTGAGCCCCAGTAGACAAGCCCAGGAGG
AGCCCTGCCAGGACCCCGAAGGAGAGGATTGTGGGAACAGTGCATGCCTGGGAGTTCCAGCTTC
AAAGCCAAGTGTCGCCTCCCAGCACGAGCAAGGAGCAGAGACTTTGGGTCTGAGCCTTCTAAAT
TTTGGGACTGGGAGCGCCGCAGATGGTAGCGTGGACAGTGAGCAAGACAAGGCAGCCCGGGGAG
CAGCCCAGGCAGACGCAAGGGCCTGGGTCGAGCCATGCCAATGGGGCACGGAGGACATGAAGGT
GTCAGGTGTGCACTGGGGCTATGAGGAAACCAAGGCTTTCCTGGCCATCTTAAGTGAGTCCCCC
TTCTCTGAGAAGCTCCAGACTTGTCACCAGAACCGCCAGGTATACCGGGCCATTGCCGAGCGGC
TGAGAGCACGGGGCTTCCTGCGGACTCTGGAGCAGTGCCGCTATAGGGTCAAAAACCTGCTACG
GAATTACCGGAAGGCCAAGAACAGTCGTCCACCAGGGACCTGCCCCTTCTACGAGGAGCTGGAG
GCCCTGGTGAGGGCTCGGACAGCCATCAGAAGAACCACAGGTGGGCCAGGAGAGGCGGTAGCAC
TCGCCAGGCTGGGTGACAGCGACACTGAGATGGATGACCAAGACGAAGGGAGCTGGGAGTCTGA
GGAGGCAACGCAGGACTGCAGTGGTTCTGGTCTGGCCGCCGAGGAGTCCATTCACGGGCCCAGG
ATTGCAGGGGGCCCAGCTCTGCTCCAGAGCCGTATTGCAGGCATGCACTGGGGCTTCGAAGAGA
CCAAGGTCTTTCTGGCAATCCTCAGTGAGTCCCCCTTCTCGGAAAAGCTTCGTACCTGTCACCA
GAACAGCCAGATATACCGGGCCATTGCGGAGCGGCTGCGGGCACTGGGTTTCCTGCGGACACTG
GAGCAGTGCCGCTACAGATTCAAAAACCTTCTTCGAAGCTACAGGAAAGCCAAGAGCAGTCGTC
CACCGGGAATCTGCCCTTTCTATGAGGAGATGGACTCACTGATGAGGGCTCGGACTGTGATCAG
GGCCATGGAGACGGTAGGAGAGGCCATAGGTCTTCCTGGACCTGGGCAGAGCGGTACTGAGGCT
GATGACCAAGAGGCCTGGGGCGAGATGGAAGACGCGGGTGCCATTAGACTTCTGACTCCAGATT
CCCAGACTCCAGGTTTTGAGTTGAAGCCTGAGGATGAATACCAGATTTCAGAGCGGGATGATTT
GGGGGATTCGCCTGGAGCCTTGTCAAGATACACCAGAGAAGCTGTTTGCCAGCCTCACGGCTGG
AGGGAGGACCATGAGAATGGAGACGAGGGGGAGTGGAGGAACACTCTCCCATGGGACGAGTGCT
CTTCTGAGGAGGACTTAGAAAAACTCATTGACCACCAAGGCCTATACCTCACAGAGGAACCCTA
CAGATGTGACACACATGTGAAGAGCTTCAGTCGGAAAGTGCATTGCTTTGCCCCCCAACGGATC
CATGCAGGTGAAAAGCCCTACAAGTGTCTGGACACTGGGAAGAGTTTTAGTGACCATGCCAACC
TCAGTACCCACCAGAGAATCCATGTTGGAGAGAAGCCTTACAGATGCCTGGAGTGTGGGAAGAG
CTTCAATGACCCCTCTAACCTCATCACCCACCAGAGAACGCACACAGGGGAAAAGCCCTATAAA
TATGGGGTGTGTTGGAAAAGTTTCACCGAGAGCTCAAACCGACTGAAACCTCAGCGCATCCACT
TGCAAGGAACTCCTGACCAGCGAAATGAGCCTGGGGAGGACTTTGGCCAAAGTCCATCATTTAG
TGCTTACTGGAGAGATTCTACACGGGAGAGACCTAAACAACCTCAGAATATCAGCATGGGTGCA
GACTCTCCTGGAGCCTGTCACCCCAACTCAGGGGAGAAGCTGTACCCGTGCCCTGAATGTGGAA
GGTGCTTCTCTAAGAACTCTGCCCTCATGAGTCACCAGAGAATCCACACAGGCGAGAAGCCATA
CGAGTGTGTGGAGTGTGGGAGGAGCTTCAGTAAGAGCTCCAGCCTGGCTAACCACCTACGAACT
CACACCGGTGAGAAGCCACATAAGTGTGCGGACTGTGGAAAGTGCTTCAGCGAGCGTTCCAAGC
TCATCACCCACCATAGGGTCCACACGGGAGAGAAGCCCTACAAGTGCCCGGAGTGTGGAAAGTT
CTTCAGAGACCGGTCCAACCTCATCACCCACCAGAGAATTCACACAGGAGAGAAGCCGTATAAG
TGCAGAGAGTGTGGAAAGTGCTTTAACCAGAGTTCCAGTCTCAATATTCACCAGAGGATCCACA
CCGGGGAGAAACCCTACAAGTGCACAGAATGTGGCAAAGACTTCAACAACAGCTCCCACTTCAG
TGCCCACCGCAGAACCCATACGGGAGGGAAAGCTCCTCCCAACTGAAGAGCAATAATATGTATC
TATACCTCCCATGTTTCTAAAACATGCTAAAAGAAACCTTCCTATGTTTAAGCTTGGTGTAAAC
TTAAAAGATGCCATCTTGGTAAAACTCCAGTAATTTGGAGATGAATTACAACTACTAAGGATTG
AAGTTTGAAATACTTCTCAAGTGTAATTTGGTTTGCACACCCTCAACACACCTAGAATCCCCAG
GCTGTCCTTACATCGGCTGTCACTTGAGAGCTTAGTCAGTGAGGCAGATGGGTGATGTGGGGGT
TAGAGTTGAACCCATGGCCCAACGTATTGATTCCAGTTTCTTCCTCTGCCTTCACTGCCCTTCC
TATGGAAAGCAGTTCTTGTTCTTGGTAGTTTGCAGTTGGGGCAAATCCTCACAGGGAAACCTTG
ACTCCTCACAGTGAGAGGAGGTGTAAATTGAGAACCAGCAAGTGAGGAAGCAGTGACATCATCA
CAGAATAATTATTTATAGCAGAAAAAGCTGTTTTTTGGCAGCCAGTACGCCAAGTGCCTTATGT
ATCATCTCATTTAATCCTCAAAGCAGTCCTACTTCCCAGAGTAGAAAACCGAGGACTAGGAAAG
TCAGGAGACCTGCATTAATAACACATCTGAAAATGGGGGAGGCAGAATTTATCAAGACTCCTGT
GCCGCAGGGCCTAAGTGGTTGTGTTCCCCCAAGTCCTCTTACATGGGGGCAGGTAGGTGGTACT
AGGATCTCAAAGTATGATCATCAAGGAACTCTCCCTTTCACAATGGAAGTTGAGAGTTCCTGCA
GATCAGAGGATTTGGTACGTTCAGAATTGGTGAGGCACTCTGCATGAGGCTGAGTTGTTACCAG
AGTGACGAGAGGAGTCACCATCTTTGGAGGAATATGGGTGAGAGAGGTAGGTAGACAGAGCCTG
GTATATCTTGCAGCAAGGTAGTGCCCTGGCTACATAGTGGGTTGAAGAGTCCTTTCTCAGATCA
GTCCTGCTTCTCTACACATGGCTGAGCACAGGTGAACAGGTCTTACCAAACAGGCCTTCCTGTA
GCCAGTCATGCCTGCCTTTTGGTCTCTCTGGCTCATGTTTTTTTCATTTCCAATCCTGGTGCCT
GAGGTGGAAGGAGTTGACACATTGTCCTCTACTGAGAGGGCTTGAAAGTGGTTCCATATTCTAT
GTTCATGGCACCATTTTAACTTGAACCCTCTCGTCTCAAGCTGCCCAGTGTGGTCTCTCAGACC
AGCCACTCAGATAGACAGGCCATAGCAGGGAGGTCTATACACAGTGATTTTCTTGCTTGTAGCA
CTTTGGCTTCCATAGTTTTTTCCTTAGGGTTTAAAAATAATGACTAAGGATGACTTTGGCGTTC
CTAGATTTTTAAAGGAAGGCGACTTCCTTACATCTACATGTGACCTTAGAATGCCACTCGCATC
CCAGTTACTCCAGGGCTGTGTGGCAAATAGTGATTGGATAATAGCTGGGAAGAACTTTGGAGAA
AGCATGTGAGAAAGCAGGTAGAAGGTCTTGCCACCCCCTCGAAAGGAGGTCGCTCCCTAGCCTT
CTTGTACCAGAACTCCCTTCCCAGGAGCCAGTCCACCCGAGGCTACTTTCAGCCAACTCTCTTC
AGTTTACCTTTCCTGGCTCATCTTATCTCTGAGGATCAGGGGTCATGGGGTGAGTTCTGGCTAG
AGATCAGCAAATGTCTGTGGCTACATCGGAAGATAGATAGAATACCCTGGGTCTGAAAGGAAGG
GTCTGGAAGTAGAGAAGAACATTCTAGAGAAAGTTACTGAGGTACGAAGGAGCATGGGTCCTAG
GTGGAGGTAGAGGTCCAGGTTTGTAGTCTCGGGTAAGGGACTGGGATGGTGGGAGGGTGGCATC
TGGGGTTGCATAAGTGCTGGGTCAAGGTCATTCTAGGTGCAGCAACATCTCCAGCTCTTTCCTT
TCACAAGTTGGAAGTTTAGCCAGGTGGGCCCTTCATGGTGCTAATCTCTATCAATCCCAGCCTC
ACATTCAGCACATGCCTTAGCTGTAATTAAATTGCCTAGTGCTCTTTTTCTCTCCAAA

hide sequence

RefSeq Acc Id:

XM_063288625 ⟹ XP_063144695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,214,023 - 146,240,678 (-)	NCBI

RefSeq Acc Id:

XM_063288626 ⟹ XP_063144696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,214,023 - 146,240,678 (-)	NCBI

RefSeq Acc Id:

XM_063288627 ⟹ XP_063144697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,214,023 - 146,240,669 (-)	NCBI

RefSeq Acc Id:

XM_063288628 ⟹ XP_063144698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,214,023 - 146,236,730 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418159	(Get FASTA)	NCBI Sequence Viewer
	NP_001418160	(Get FASTA)	NCBI Sequence Viewer
	NP_001418161	(Get FASTA)	NCBI Sequence Viewer
	XP_008762400	(Get FASTA)	NCBI Sequence Viewer
	XP_063144695	(Get FASTA)	NCBI Sequence Viewer
	XP_063144696	(Get FASTA)	NCBI Sequence Viewer
	XP_063144697	(Get FASTA)	NCBI Sequence Viewer
	XP_063144698	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80497	(Get FASTA)	NCBI Sequence Viewer
	EDL80498	(Get FASTA)	NCBI Sequence Viewer
	EDL80499	(Get FASTA)	NCBI Sequence Viewer
	EDL80500	(Get FASTA)	NCBI Sequence Viewer
	EDL80501	(Get FASTA)	NCBI Sequence Viewer
	EDL80502	(Get FASTA)	NCBI Sequence Viewer
	EDL80503	(Get FASTA)	NCBI Sequence Viewer
	EDL80504	(Get FASTA)	NCBI Sequence Viewer
	EDL80505	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008887
	ENSRNOP00000008887.7
	ENSRNOP00000099859
	ENSRNOP00000099859.1

RefSeq Acc Id:

XP_008762400 ⟸ XM_008764178

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMAVASPPPEPEDLLIVKLEEDSWGSRSRPEESSHSSVPGPEVSRLCFRQFQYQDAAGPHEAFS
QLWALCCRWLRPELRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDWHREAW
AAGQQGLELCTEDTRSFEAVQEFQRFQLQPVAHCSERQPQKQRVEKTHPGLSKMPPESLKESAV
FTPQAPSVPKMASAGDWEMAAKSQETLSPSRQAQEEPCQDPEGEDCGNSACLGVPASKPSVASQ
HEQGAETLGLSLLNFGTGSAADGSVDSEQDKAARGAAQADARAWVEPCQWGTEDMKVSGVHWGY
EETKAFLAILSESPFSEKLQTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKN
SRPPGTCPFYEELEALVRARTAIRRTTGGPGEAVALARLGDSDTEMDDQDEGSWESEEATQDCS
GSGLAAEESIHGPRIAGGPALLQSRIAGMHWGFEETKVFLAILSESPFSEKLRTCHQNSQIYRA
IAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSRPPGICPFYEEMDSLMRARTVIRAMETVGE
AIGLPGPGQSGTEADDQEAWGEMEDAGAIRLLTPDSQTPGFELKPEDEYQISERDDLGDSPGAL
SRYTREAVCQPHGWREDHENGDEGEWRNTLPWDECSSEEDLEKLIDHQGLYLTEEPYRCDTHVK
SFSRKVHCFAPQRIHAGEKPYKCLDTGKSFSDHANLSTHQRIHVGEKPYRCLECGKSFNDPSNL
ITHQRTHTGEKPYKYGVCWKSFTESSNRLKPQRIHLQGTPDQRNEPGEDFGQSPSFSAYWRDST
RERPKQPQNISMGADSPGACHPNSGEKLYPCPECGRCFSKNSALMSHQRIHTGEKPYECVECGR
SFSKSSSLANHLRTHTGEKPHKCADCGKCFSERSKLITHHRVHTGEKPYKCPECGKFFRDRSNL
ITHQRIHTGEKPYKCRECGKCFNQSSSLNIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHT
GGKAPPN

hide sequence

Ensembl Acc Id:

ENSRNOP00000008887 ⟸ ENSRNOT00000008887

RefSeq Acc Id:	XP_063144696 ⟸ XM_063288626
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144695 ⟸ XM_063288625
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144697 ⟸ XM_063288627
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063144698 ⟸ XM_063288628
- Peptide Label:	isoform X4
- UniProtKB:	D3ZCC2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099859 ⟸ ENSRNOT00000157762

RefSeq Acc Id:

NP_001418160 ⟸ NM_001431231

RefSeq Acc Id:

NP_001418159 ⟸ NM_001431230

RefSeq Acc Id:

NP_001418161 ⟸ NM_001431232

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZCC2-F1-model_v2	AlphaFold	D3ZCC2	1-1031	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562996	AgrOrtholog
BioCyc Gene	G2FUF-39841	BioCyc
Ensembl Genes	ENSRNOG00000005886	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008887	ENTREZGENE
	ENSRNOT00000008887.8	UniProtKB/TrEMBL
	ENSRNOT00000157762	ENTREZGENE
	ENSRNOT00000157762.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Myb_DNA-bind_4	UniProtKB/TrEMBL
	SANT_DNA-bd	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:500549	UniProtKB/TrEMBL
NCBI Gene	500549	ENTREZGENE
PANTHER	FI01424P	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	Myb_DNA-bind_4	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zscan20	PhenoGen
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005886	RatGTEx
SMART	SANT	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0ABK0LEY6_RAT	UniProtKB/TrEMBL
	D3ZCC2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Zscan20	zinc finger and SCAN domain containing 20	Zscan20	zinc finger and SCAN domains 20	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Zscan20	zinc finger and SCAN domains 20	RGD1562996_predicted	similar to Zfp31 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562996_predicted	similar to Zfp31 protein (predicted)	LOC500549	similar to Zfp31 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500549	similar to Zfp31 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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