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Gene: Rbak (RB-associated KRAB zinc finger) Rattus norvegicus

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Symbol:

Rbak

Name:

RB-associated KRAB zinc finger

RGD ID:

1562875

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nuclear lumen. Orthologous to human RBAK (RB associated KRAB zinc finger); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC288489; RB-associated KRAB repressor; RB-associated KRAB zinc finger protein; RGD1562875; similar to RB-associated KRAB repressor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBAK (RB associated KRAB zinc finger)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rbak (RB-associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBAK (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBAK (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbak (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBAK (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBAK (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbak (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rbak (RB associated KRAB zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF12 (zinc finger protein 12)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Rbak (RB-associated KRAB zinc finger)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbak (RB-associated KRAB zinc finger)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBAK (RB associated KRAB zinc finger)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBAK (RB associated KRAB zinc finger)	Alliance	DIOPT (HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC496795	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC496795	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC116411613	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	16,488,895 - 16,502,523 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	16,488,950 - 16,502,733 (+)	Ensembl				GRCr8
mRatBN7.2	12	11,375,314 - 11,388,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	11,375,318 - 11,388,934 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	12,184,277 - 12,196,488 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,807,555 - 12,819,766 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,833,653 - 11,845,864 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	13,428,648 - 13,442,279 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	13,428,685 - 13,442,286 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	11,748,333 - 11,760,544 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	13,168,595 - 13,180,802 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ferric oxide (ISO)

folic acid (ISO)

formaldehyde (ISO)

geldanamycin (ISO)

gentamycin (EXP)

mercury dichloride (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

p-chloromercuribenzoic acid (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercitrin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

Cellular Component

nuclear lumen (IEA)

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Rbak
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	16,488,895 - 16,502,523 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	16,488,950 - 16,502,733 (+)	Ensembl				GRCr8
mRatBN7.2	12	11,375,314 - 11,388,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	11,375,318 - 11,388,934 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	12,184,277 - 12,196,488 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,807,555 - 12,819,766 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,833,653 - 11,845,864 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	13,428,648 - 13,442,279 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	13,428,685 - 13,442,286 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	11,748,333 - 11,760,544 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	13,168,595 - 13,180,802 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

RBAK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	5,045,860 - 5,069,487 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	5,045,821 - 5,069,491 (+)	Ensembl			hg38	GRCh38
GRCh37	7	5,085,491 - 5,109,118 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	5,052,079 - 5,075,645 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	5,044,901 - 5,068,467 (+)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	5,000,481 - 5,024,148 (+)	NCBI		HuRef
CHM1_1	7	5,085,039 - 5,108,706 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	5,163,659 - 5,187,282 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	5,131,807 - 5,155,474 (+)	NCBI

Rbak
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,157,941 - 143,166,530 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,172,186 - 143,180,775 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	143,933,867 - 143,942,422 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,437,326 - 143,445,915 (-)	NCBI		MGSCv36	mm8
Celera	5	140,216,911 - 140,225,466 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	81.98	NCBI

RBAK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	10,013,378 - 10,037,654 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	58,338,781 - 58,358,815 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	5,304,827 - 5,328,372 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	5,332,884 - 5,356,307 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	5,344,120 - 5,356,307 (+)	Ensembl			panPan2	panpan1.1

RBAK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	12,072,465 - 12,097,422 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	12,073,368 - 12,093,811 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	18,326,735 - 18,342,501 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	12,166,066 - 12,194,774 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	6	12,033,522 - 12,049,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	11,954,564 - 11,982,773 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	12,207,419 - 12,259,386 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	140,321,392 - 140,339,751 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936765	315,255 - 326,409 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936765	312,474 - 327,089 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBAK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	4,422,784 - 4,439,945 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	4,422,481 - 4,439,943 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	144,137,154 - 144,154,400 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBAK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	16,594,449 - 16,648,577 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666090	5,279,291 - 5,326,056 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbak
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	27,682,835 - 27,701,904 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	27,681,328 - 27,700,055 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbak
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	9,953,818 - 9,967,245 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rbak
129 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	423
Count of miRNA genes:	218
Interacting mature miRNAs:	268
Transcripts:	ENSRNOT00000001455
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	90	59	6	354	190	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001455 ⟹ ENSRNOP00000001455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	16,488,950 - 16,502,521 (+)	Ensembl
mRatBN7.2 Ensembl	12	11,375,318 - 11,388,934 (+)	Ensembl
Rnor_6.0 Ensembl	12	13,430,069 - 13,442,276 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077986 ⟹ ENSRNOP00000072704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	13,428,685 - 13,442,286 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127332 ⟹ ENSRNOP00000110760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	16,488,950 - 16,502,733 (+)	Ensembl

RefSeq Acc Id:

NM_001191664 ⟹ NP_001178593

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	16,490,313 - 16,502,520 (+)	NCBI
mRatBN7.2	12	11,376,726 - 11,388,934 (+)	NCBI
Rnor_6.0	12	13,430,069 - 13,442,276 (+)	NCBI
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI
Celera	12	13,168,595 - 13,180,802 (+)	NCBI

Sequence:

show sequence

ATGAGCATATCAAAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGT
GGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAA
CCTCGTCTCCGTGGGGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAA
GAACCCTGGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGGAAATCAAAAAAGTTGATG
ACCCCAGAGAAGGAATCCAGGAAAATGGCGAGAAACATCTGCAGTGCGGTGATGATCTCCACAG
CTGGAGAGCGGAGAAGGGGGACGAGTTTGATGAAGCCTGCACCCTAGAACCACCCCTCATTTCC
CCCAGCTCAGGCGCTCACAGCTGTGTCTCCTGTGGGAAGACTTTGGAATCTGTTACAGAACTGA
TTTGCAGTGATGGAAGCTATGCAGTAGAGAAGCCCGACAAGTGTTTTGAGTGTGGGAAAGGGTA
CAGAGAAAACCCTGAGGACCTTAACCAAAGTGAGGGTAACTCTTCTGAACGTGACGAAAGTATT
CTGCAGAAAATCACCATTTTGGAGAAACCCTTTGACTATGAGTGCTTGGAAGCCTTAGACAGGG
AAAGTGTTTTCATGGCTCATGAGAGAGCTTACATGGGGGAGAAGCCCTATGAATGGAACGGTTC
TGGACCAGACTTCATCCAGATATCAGACTTCAGTACGTATCACAGATCACAAGTGGAAATGAAG
CCCTTCGAATGTACGCAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTCATCATCCATCAGA
GAGCGCACACAGGAGAGAAACCGTATGCTTGCGGTGTGTGTGGAAAGTCCTTTAGTCAAAAGGG
GACCCTCACTGTACATCGGAGGTCACACTTAGAGGAGAAGCCCTATAAGTGCGATGAGTGTGGG
AAGACCTTCTGTCAGAAGTTACACCTCACACAGCACCAGAGAACTCACTCAGGAGAGAAGCCCT
ACGAATGTAGCGAGTGCGGGAAGACCTTCTGCCAGAAGACGCACCTTACTCTACACCAGAGGAA
TCATTCAGGGGAGAGGCCCTATCCGTGTAGTGAATGCGGGAAATCCTTCTCCCGGAAGTCTGCC
CTCAATGACCATCAGAGAACACACACAGGAGAGAAGCTCTACACGTGTAACGAGTGTGGTAAGT
CCTACTACCGGAAGTCCACCCTCATCACGCACCAGAGAACACACACGGGGGAGAAGCCCTATCA
GTGTAGTGAGTGTGGGAAGTTCTTCTCTCGCGTGTCGTACCTCACCATACACTATAGGAGCCAT
TTAGAAGAGAAACCTTATGAGTGTACAGAATGTGGGAAAACCTTCAATCTAAACTCCGCCTTCA
CCAGGCACCGGAAGGCCCATGCAGAAGAGAGAGTGCAGGAGTGCGGTGAGTGTGGGAAGCCGTC
CCGGCTGCAGTATCTCCCTGATCACGCTGATGGCCTAGGAGAGAAGCACCACGGGTGTAATGAG
TGTGGGAAGACCTTCCTTGAAAACTCAGCCTTCAGCAGGCACCAGCCCGTTCCCGAAGGGGAGA
AAACTTACGAGTGTAACATATGCGGGAAGGTGTTCTCTGACCTGTCGTGCTACACTGTGCATTA
CAGAGGTCATTCAGAAGAGAAACCCTTTGGCTGCAGCGAGTGTGGGAAAACCTTCTCTCATAAT
TCATCCCTCTTCAGACATCAGAGAGTACACACAGGCGAGAAGCCGTACGAGTGTTACGAGTGTG
GCAAGTTCTTCTCGCAGAAGTCCTACCTCACTATCCATCACAGGATCCATTCAGGAGAGAAGCC
GTACGAGTGTAGCAAGTGTGGCAAAGTGTTCTCTCGGATGTCGAACCTCACCGTCCACTACCGA
AGCCATTCAGGAGAGAAGCCCTATGAATGTAATGAGTGTGGAAAAGTCTTCTCCCAGAAGTCGT
ACCTCACTGTTCATTACCGGACTCATTCAGGAGAGAAGCCTTATGAATGTAACGAATGTGGGAA
AAAATTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAGAGGGACTATAAAT
GTACTTAATGTAGAAAATCTCTGACGTCTCAATTTTTAAAAAGACATATGGTTATAGTGAACAT
TGGGAGTCCAATAGGTAGTCAAGGGTGCCCCCCCAAACTTTTAATATATGTGGTGCTGGGAACT
GAATATGGGCCCTTTGCATGCTATAGAAATTCTGCACTGAGCTGGACTGCAGTGACTCACGAGT
TGAGCACCCCTGCTCTTAAAGAGTGTGAAGTCCTAAAACAAAATCCATTTTAACCTGAATTTTC
AGAGCAGAATCTGTAAAGATTGGGCAAGAAGCAAACCGTTTATGGGACACTAGGTAATTTTTAC
AGGAGTGAAACTTCGAAAGTATTTAATATTTATTTTTTATTTAAATTGTATTTACATATCAGGG
AGCGTTGCCGAGAACTGTCAGCCGATGAGTATAACTCACCTTGGACACATACGCTAAAAGCCAT
ATTTCTGATGTCAGACCAGGTGTCTATAGACAGGATGCAAGAAGCCGTCAGCTCTGAGCAAAGT
TATGAAATGAAATTATAAAGCTAGCGCTTGGCCACGAGGATGACTAAACCACGGCACCTCTGCT
GTTCTAGAAGTCGAGCAGCCATTCTATGCAATGTTTGCCATCTCCGCCTCGAACGATTGGTGGA
AACCTGGTATCCAGGATTAGCAACGCCTGTTACAGTGGGTCCATTGGTGGGATATGCTATGTGA
TCGGGAAGTACATAGTTTTCTAGGTCACTGCTTGCCAGGAGAGCGGTTTTGTAAAAAATTTTCA
ACTGGAATTGAGCAAAAAATTTTTTAAAATACTATTTTGATAAA

hide sequence

RefSeq Acc Id:

XM_006248867 ⟹ XP_006248929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	16,488,896 - 16,502,523 (+)	NCBI
mRatBN7.2	12	11,375,314 - 11,388,937 (+)	NCBI
Rnor_6.0	12	13,428,648 - 13,442,279 (+)	NCBI
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI

Sequence:

show sequence

TCCGGAAAGATGCTGCACATGCGCGTCGCGGTCCGTGCGCGTTCCTGTGCGTGTGCAGGGCCAC
TGCGCCGCTGTGACTCCTGCAGGTCCGTCGTCGAGGCTACCTTCCTTCCCACAGCTTTTGCACC
CGCTAAGCTGGAGTCGCCGAGCCTGCGGGAACGAGACCGGAGCTTCCGGGGCGGCAGCGAACAG
ACTCAGCTGTGCTGGCCTGGGAGGCCTAGAGGGAGCTCGGCGCGGAGGACGACAGTGGCGGCGG
GGCCGTCTGCTGGCAGGTCAGTCGTCAGTGTTGTCTACGGTTTCCCAAGAGGAGCAAAAGATGA
GCATATCAAAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCA
GCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTC
GTCTCCGTGGGGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAAGAAC
CCTGGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGGAAATCAAAAAAGTTGATGACCC
CAGAGAAGGAATCCAGGAAAATGGCGAGAAACATCTGCAGTGCGGTGATGATCTCCACAGCTGG
AGAGCGGAGAAGGGGGACGAGTTTGATGAAGCCTGCACCCTAGAACCACCCCTCATTTCCCCCA
GCTCAGGCGCTCACAGCTGTGTCTCCTGTGGGAAGACTTTGGAATCTGTTACAGAACTGATTTG
CAGTGATGGAAGCTATGCAGTAGAGAAGCCCGACAAGTGTTTTGAGTGTGGGAAAGGGTACAGA
GAAAACCCTGAGGACCTTAACCAAAGTGAGGGTAACTCTTCTGAACGTGACGAAAGTATTCTGC
AGAAAATCACCATTTTGGAGAAACCCTTTGACTATGAGTGCTTGGAAGCCTTAGACAGGGAAAG
TGTTTTCATGGCTCATGAGAGAGCTTACATGGGGGAGAAGCCCTATGAATGGAACGGTTCTGGA
CCAGACTTCATCCAGATATCAGACTTCAGTACGTATCACAGATCACAAGTGGAAATGAAGCCCT
TCGAATGTACGCAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTCATCATCCATCAGAGAGC
GCACACAGGAGAGAAACCGTATGCTTGCGGTGTGTGTGGAAAGTCCTTTAGTCAAAAGGGGACC
CTCACTGTACATCGGAGGTCACACTTAGAGGAGAAGCCCTATAAGTGCGATGAGTGTGGGAAGA
CCTTCTGTCAGAAGTTACACCTCACACAGCACCAGAGAACTCACTCAGGAGAGAAGCCCTACGA
ATGTAGCGAGTGCGGGAAGACCTTCTGCCAGAAGACGCACCTTACTCTACACCAGAGGAATCAT
TCAGGGGAGAGGCCCTATCCGTGTAGTGAATGCGGGAAATCCTTCTCCCGGAAGTCTGCCCTCA
ATGACCATCAGAGAACACACACAGGAGAGAAGCTCTACACGTGTAACGAGTGTGGTAAGTCCTA
CTACCGGAAGTCCACCCTCATCACGCACCAGAGAACACACACGGGGGAGAAGCCCTATCAGTGT
AGTGAGTGTGGGAAGTTCTTCTCTCGCGTGTCGTACCTCACCATACACTATAGGAGCCATTTAG
AAGAGAAACCTTATGAGTGTACAGAATGTGGGAAAACCTTCAATCTAAACTCCGCCTTCACCAG
GCACCGGAAGGCCCATGCAGAAGAGAGAGTGCAGGAGTGCGGTGAGTGTGGGAAGCCGTCCCGG
CTGCAGTATCTCCCTGATCACGCTGATGGCCTAGGAGAGAAGCACCACGGGTGTAATGAGTGTG
GGAAGACCTTCCTTGAAAACTCAGCCTTCAGCAGGCACCAGCCCGTTCCCGAAGGGGAGAAAAC
TTACGAGTGTAACATATGCGGGAAGGTGTTCTCTGACCTGTCGTGCTACACTGTGCATTACAGA
GGTCATTCAGAAGAGAAACCCTTTGGCTGCAGCGAGTGTGGGAAAACCTTCTCTCATAATTCAT
CCCTCTTCAGACATCAGAGAGTACACACAGGCGAGAAGCCGTACGAGTGTTACGAGTGTGGCAA
GTTCTTCTCGCAGAAGTCCTACCTCACTATCCATCACAGGATCCATTCAGGAGAGAAGCCGTAC
GAGTGTAGCAAGTGTGGCAAAGTGTTCTCTCGGATGTCGAACCTCACCGTCCACTACCGAAGCC
ATTCAGGAGAGAAGCCCTATGAATGTAATGAGTGTGGAAAAGTCTTCTCCCAGAAGTCGTACCT
CACTGTTCATTACCGGACTCATTCAGGAGAGAAGCCTTATGAATGTAACGAATGTGGGAAAAAA
TTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAGAGGGACTATAAATGTAC
TTAATGTAGAAAATCTCTGACGTCTCAATTTTTAAAAAGACATATGGTTATAGTGAACATTGGG
AGTCCAATAGGTAGTCAAGGGTGCCCCCCCAAACTTTTAATATATGTGGTGCTGGGAACTGAAT
ATGGGCCCTTTGCATGCTATAGAAATTCTGCACTGAGCTGGACTGCAGTGACTCACGAGTTGAG
CACCCCTGCTCTTAAAGAGTGTGAAGTCCTAAAACAAAATCCATTTTAACCTGAATTTTCAGAG
CAGAATCTGTAAAGATTGGGCAAGAAGCAAACCGTTTATGGGACACTAGGTAATTTTTACAGGA
GTGAAACTTCGAAAGTATTTAATATTTATTTTTTATTTAAATTGTATTTACATATCAGGGAGCG
TTGCCGAGAACTGTCAGCCGATGAGTATAACTCACCTTGGACACATACGCTAAAAGCCATATTT
CTGATGTCAGACCAGGTGTCTATAGACAGGATGCAAGAAGCCGTCAGCTCTGAGCAAAGTTATG
AAATGAAATTATAAAGCTAGCGCTTGGCCACGAGGATGACTAAACCACGGCACCTCTGCTGTTC
TAGAAGTCGAGCAGCCATTCTATGCAATGTTTGCCATCTCCGCCTCGAACGATTGGTGGAAACC
TGGTATCCAGGATTAGCAACGCCTGTTACAGTGGGTCCATTGGTGGGATATGCTATGTGATCGG
GAAGTACATAGTTTTCTAGGTCACTGCTTGCCAGGAGAGCGGTTTTGTAAAAAATTTTCAACTG
GAATTGAGCAAAAAATTTTTTAAAATACTATTTTGATAAACTA

hide sequence

RefSeq Acc Id:

XM_006248868 ⟹ XP_006248930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	16,488,895 - 16,502,523 (+)	NCBI
mRatBN7.2	12	11,375,314 - 11,388,937 (+)	NCBI
Rnor_6.0	12	13,428,648 - 13,442,279 (+)	NCBI
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI

Sequence:

show sequence

TCCGGAAAGATGCTGCACATGCGCGTCGCGGTCCGTGCGCGTTCCTGTGCGTGTGCAGGGCCAC
TGCGCCGCTGTGACTCCTGCAGGTCCGTCGTCGAGGCTACCTTCCTTCCCACAGCTTTTGCACC
CGCTAAGCTGGAGTCGCCGAGCCTGCGGGAACGAGACCGGAGCTTCCGGGGCGGCAGCGAACAG
ACTCAGCTGTGCTGGCCTGGGAGGCCTAGAGGGAGCTCGGCGCGGAGGACGACAGTGGCGGCGG
GGCCGTCTGCTGGGTCAGTCGTCAGTGTTGTCTACGGTTTCCCAAGAGGAGCAAAAGATGAGCA
TATCAAAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCA
GCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTC
TCCGTGGGGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAAGAACCCT
GGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGGAAATCAAAAAAGTTGATGACCCCAG
AGAAGGAATCCAGGAAAATGGCGAGAAACATCTGCAGTGCGGTGATGATCTCCACAGCTGGAGA
GCGGAGAAGGGGGACGAGTTTGATGAAGCCTGCACCCTAGAACCACCCCTCATTTCCCCCAGCT
CAGGCGCTCACAGCTGTGTCTCCTGTGGGAAGACTTTGGAATCTGTTACAGAACTGATTTGCAG
TGATGGAAGCTATGCAGTAGAGAAGCCCGACAAGTGTTTTGAGTGTGGGAAAGGGTACAGAGAA
AACCCTGAGGACCTTAACCAAAGTGAGGGTAACTCTTCTGAACGTGACGAAAGTATTCTGCAGA
AAATCACCATTTTGGAGAAACCCTTTGACTATGAGTGCTTGGAAGCCTTAGACAGGGAAAGTGT
TTTCATGGCTCATGAGAGAGCTTACATGGGGGAGAAGCCCTATGAATGGAACGGTTCTGGACCA
GACTTCATCCAGATATCAGACTTCAGTACGTATCACAGATCACAAGTGGAAATGAAGCCCTTCG
AATGTACGCAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTCATCATCCATCAGAGAGCGCA
CACAGGAGAGAAACCGTATGCTTGCGGTGTGTGTGGAAAGTCCTTTAGTCAAAAGGGGACCCTC
ACTGTACATCGGAGGTCACACTTAGAGGAGAAGCCCTATAAGTGCGATGAGTGTGGGAAGACCT
TCTGTCAGAAGTTACACCTCACACAGCACCAGAGAACTCACTCAGGAGAGAAGCCCTACGAATG
TAGCGAGTGCGGGAAGACCTTCTGCCAGAAGACGCACCTTACTCTACACCAGAGGAATCATTCA
GGGGAGAGGCCCTATCCGTGTAGTGAATGCGGGAAATCCTTCTCCCGGAAGTCTGCCCTCAATG
ACCATCAGAGAACACACACAGGAGAGAAGCTCTACACGTGTAACGAGTGTGGTAAGTCCTACTA
CCGGAAGTCCACCCTCATCACGCACCAGAGAACACACACGGGGGAGAAGCCCTATCAGTGTAGT
GAGTGTGGGAAGTTCTTCTCTCGCGTGTCGTACCTCACCATACACTATAGGAGCCATTTAGAAG
AGAAACCTTATGAGTGTACAGAATGTGGGAAAACCTTCAATCTAAACTCCGCCTTCACCAGGCA
CCGGAAGGCCCATGCAGAAGAGAGAGTGCAGGAGTGCGGTGAGTGTGGGAAGCCGTCCCGGCTG
CAGTATCTCCCTGATCACGCTGATGGCCTAGGAGAGAAGCACCACGGGTGTAATGAGTGTGGGA
AGACCTTCCTTGAAAACTCAGCCTTCAGCAGGCACCAGCCCGTTCCCGAAGGGGAGAAAACTTA
CGAGTGTAACATATGCGGGAAGGTGTTCTCTGACCTGTCGTGCTACACTGTGCATTACAGAGGT
CATTCAGAAGAGAAACCCTTTGGCTGCAGCGAGTGTGGGAAAACCTTCTCTCATAATTCATCCC
TCTTCAGACATCAGAGAGTACACACAGGCGAGAAGCCGTACGAGTGTTACGAGTGTGGCAAGTT
CTTCTCGCAGAAGTCCTACCTCACTATCCATCACAGGATCCATTCAGGAGAGAAGCCGTACGAG
TGTAGCAAGTGTGGCAAAGTGTTCTCTCGGATGTCGAACCTCACCGTCCACTACCGAAGCCATT
CAGGAGAGAAGCCCTATGAATGTAATGAGTGTGGAAAAGTCTTCTCCCAGAAGTCGTACCTCAC
TGTTCATTACCGGACTCATTCAGGAGAGAAGCCTTATGAATGTAACGAATGTGGGAAAAAATTC
CACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAGAGGGACTATAAATGTACTTA
ATGTAGAAAATCTCTGACGTCTCAATTTTTAAAAAGACATATGGTTATAGTGAACATTGGGAGT
CCAATAGGTAGTCAAGGGTGCCCCCCCAAACTTTTAATATATGTGGTGCTGGGAACTGAATATG
GGCCCTTTGCATGCTATAGAAATTCTGCACTGAGCTGGACTGCAGTGACTCACGAGTTGAGCAC
CCCTGCTCTTAAAGAGTGTGAAGTCCTAAAACAAAATCCATTTTAACCTGAATTTTCAGAGCAG
AATCTGTAAAGATTGGGCAAGAAGCAAACCGTTTATGGGACACTAGGTAATTTTTACAGGAGTG
AAACTTCGAAAGTATTTAATATTTATTTTTTATTTAAATTGTATTTACATATCAGGGAGCGTTG
CCGAGAACTGTCAGCCGATGAGTATAACTCACCTTGGACACATACGCTAAAAGCCATATTTCTG
ATGTCAGACCAGGTGTCTATAGACAGGATGCAAGAAGCCGTCAGCTCTGAGCAAAGTTATGAAA
TGAAATTATAAAGCTAGCGCTTGGCCACGAGGATGACTAAACCACGGCACCTCTGCTGTTCTAG
AAGTCGAGCAGCCATTCTATGCAATGTTTGCCATCTCCGCCTCGAACGATTGGTGGAAACCTGG
TATCCAGGATTAGCAACGCCTGTTACAGTGGGTCCATTGGTGGGATATGCTATGTGATCGGGAA
GTACATAGTTTTCTAGGTCACTGCTTGCCAGGAGAGCGGTTTTGTAAAAAATTTTCAACTGGAA
TTGAGCAAAAAATTTTTTAAAATACTATTTTGATAAACTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178593	(Get FASTA)	NCBI Sequence Viewer
	NP_001423392	(Get FASTA)	NCBI Sequence Viewer
	XP_006248929	(Get FASTA)	NCBI Sequence Viewer
	XP_006248930	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89685	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001455
	ENSRNOP00000001455.6
	ENSRNOP00000110760.1

RefSeq Acc Id:

NP_001178593 ⟸ NM_001191664

- UniProtKB:

F1M2Y6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSISKGPLSFKDVAVAFSQEEWQQLDSEERTTYRDVMLETYSNLVSVGYDVTKPNVIIKLEQGE
EPWTVEGDRHAKRHLEIKKVDDPREGIQENGEKHLQCGDDLHSWRAEKGDEFDEACTLEPPLIS
PSSGAHSCVSCGKTLESVTELICSDGSYAVEKPDKCFECGKGYRENPEDLNQSEGNSSERDESI
LQKITILEKPFDYECLEALDRESVFMAHERAYMGEKPYEWNGSGPDFIQISDFSTYHRSQVEMK
PFECTQCGKSFCKKSKFIIHQRAHTGEKPYACGVCGKSFSQKGTLTVHRRSHLEEKPYKCDECG
KTFCQKLHLTQHQRTHSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPCSECGKSFSRKSA
LNDHQRTHTGEKLYTCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSH
LEEKPYECTECGKTFNLNSAFTRHRKAHAEERVQECGECGKPSRLQYLPDHADGLGEKHHGCNE
CGKTFLENSAFSRHQPVPEGEKTYECNICGKVFSDLSCYTVHYRGHSEEKPFGCSECGKTFSHN
SSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYR
SHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRIHKRGTIN
VLNVENL

hide sequence

RefSeq Acc Id:

XP_006248929 ⟸ XM_006248867

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSISKGPLSFKDVAVAFSQEEWQQLDSEERTTYRDVMLETYSNLVSVGYDVTKPNVIIKLEQGE
EPWTVEGDRHAKRHLEIKKVDDPREGIQENGEKHLQCGDDLHSWRAEKGDEFDEACTLEPPLIS
PSSGAHSCVSCGKTLESVTELICSDGSYAVEKPDKCFECGKGYRENPEDLNQSEGNSSERDESI
LQKITILEKPFDYECLEALDRESVFMAHERAYMGEKPYEWNGSGPDFIQISDFSTYHRSQVEMK
PFECTQCGKSFCKKSKFIIHQRAHTGEKPYACGVCGKSFSQKGTLTVHRRSHLEEKPYKCDECG
KTFCQKLHLTQHQRTHSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPCSECGKSFSRKSA
LNDHQRTHTGEKLYTCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSH
LEEKPYECTECGKTFNLNSAFTRHRKAHAEERVQECGECGKPSRLQYLPDHADGLGEKHHGCNE
CGKTFLENSAFSRHQPVPEGEKTYECNICGKVFSDLSCYTVHYRGHSEEKPFGCSECGKTFSHN
SSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYR
SHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRIHKRGTIN
VLNVENL

hide sequence

RefSeq Acc Id:

XP_006248930 ⟸ XM_006248868

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSISKGPLSFKDVAVAFSQEEWQQLDSEERTTYRDVMLETYSNLVSVGYDVTKPNVIIKLEQGE
EPWTVEGDRHAKRHLEIKKVDDPREGIQENGEKHLQCGDDLHSWRAEKGDEFDEACTLEPPLIS
PSSGAHSCVSCGKTLESVTELICSDGSYAVEKPDKCFECGKGYRENPEDLNQSEGNSSERDESI
LQKITILEKPFDYECLEALDRESVFMAHERAYMGEKPYEWNGSGPDFIQISDFSTYHRSQVEMK
PFECTQCGKSFCKKSKFIIHQRAHTGEKPYACGVCGKSFSQKGTLTVHRRSHLEEKPYKCDECG
KTFCQKLHLTQHQRTHSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPCSECGKSFSRKSA
LNDHQRTHTGEKLYTCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSH
LEEKPYECTECGKTFNLNSAFTRHRKAHAEERVQECGECGKPSRLQYLPDHADGLGEKHHGCNE
CGKTFLENSAFSRHQPVPEGEKTYECNICGKVFSDLSCYTVHYRGHSEEKPFGCSECGKTFSHN
SSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYR
SHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRIHKRGTIN
VLNVENL

hide sequence

Ensembl Acc Id:

ENSRNOP00000072704 ⟸ ENSRNOT00000077986

Ensembl Acc Id:

ENSRNOP00000001455 ⟸ ENSRNOT00000001455

Ensembl Acc Id:

ENSRNOP00000110760 ⟸ ENSRNOT00000127332

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M2Y6-F1-model_v2	AlphaFold	F1M2Y6	1-711	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698445

Promoter ID:

EPDNEW_R8967

Type:

multiple initiation site

Name:

Rbak_1

Description:

RB-associated KRAB zinc finger

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	13,428,691 - 13,428,751	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562875	AgrOrtholog
BioCyc Gene	G2FUF-19993	BioCyc
Ensembl Genes	ENSRNOG00000001099	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001455	ENTREZGENE
	ENSRNOT00000001455.8	UniProtKB/TrEMBL
	ENSRNOT00000127332.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:288489	UniProtKB/TrEMBL
NCBI Gene	288489	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Rbak	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001099	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0ABK0M5P3_RAT	UniProtKB/TrEMBL
	F1M2Y6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-24	Rbak	RB-associated KRAB zinc finger	Rbak	RB-associated KRAB repressor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Rbak	RB-associated KRAB repressor	RGD1562875_predicted	similar to RB-associated KRAB repressor (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562875_predicted	similar to RB-associated KRAB repressor (predicted)	LOC288489	similar to RB-associated KRAB repressor	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC288489	similar to RB-associated KRAB repressor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar