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Gene: Ncapd2 (non-SMC condensin I complex, subunit D2) Rattus norvegicus

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Symbol:

Ncapd2

Name:

non-SMC condensin I complex, subunit D2

RGD ID:

1562596

Description:

Predicted to enable histone binding activity. Predicted to be involved in chromosome condensation; positive regulation of chromosome condensation; and regulation of chromosome segregation. Predicted to be located in condensed nuclear chromosome; cytoplasm; and pronucleus. Predicted to be part of condensin complex. Predicted to be active in condensed chromosome, centromeric region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 21. Orthologous to human NCAPD2 (non-SMC condensin I complex subunit D2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

condensin complex subunit 1; LOC362438; RGD1562596; similar to mKIAA0159 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCAPD2 (non-SMC condensin I complex subunit D2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ncapd2 (non-SMC condensin I complex, subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncapd2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCAPD2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCAPD2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncapd2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCAPD2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCAPD2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncapd2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ncapd2 (non-SMC condensin I complex subunit D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ncapd2 (non-SMC condensin I complex, subunit D2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ncapd2 (non-SMC condensin I complex, subunit D2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NCAPD2 (non-SMC condensin I complex subunit D2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ncapd2 (non-SMC condensin I complex, subunit D2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dpy-28	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	dpy-28	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cap-D2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cap-D2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCS4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncapd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,655,051 - 159,677,938 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,655,051 - 159,677,938 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,968,814 - 157,992,314 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,968,815 - 157,992,020 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	164,197,880 - 164,220,783 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,980,795 - 160,003,698 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,616,789 - 158,639,664 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,682,855 - 157,705,903 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,683,077 - 157,704,596 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,700,039 - 224,722,952 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	161,288,671 - 161,310,417 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,705,847 - 146,728,900 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

primary autosomal recessive microcephaly 21 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP,ISO)

adefovir pivoxil (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chloroacetaldehyde (ISO)

chromium(6+) (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

corticosterone (EXP)

coumarin (ISO)

coumestrol (ISO)

CU-O LINKAGE (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (ISO)

diallyl trisulfide (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

hexadecanoic acid (ISO)

ifosfamide (ISO)

isobutanol (ISO)

ivermectin (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

metformin (EXP)

methapyrilene (EXP)

methimazole (EXP)

miconazole (ISO)

N(4)-hydroxycytidine (ISO)

naphthalene (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP,ISO)

propanal (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

chromosome condensation (IEA)

meiotic chromosome condensation (IBA)

mitotic cell cycle (IEA)

mitotic chromosome condensation (IBA,IEA,ISO)

positive regulation of chromosome condensation (IEA,ISO)

positive regulation of chromosome segregation (ISO)

positive regulation of chromosome separation (ISO)

Cellular Component

chromosome (IEA)

condensed chromosome (IEA,ISO)

condensed chromosome, centromeric region (IBA)

condensed nuclear chromosome (ISO)

condensin complex (IBA,IEA,ISO)

cytoplasm (IEA,ISO)

cytosol (IEA,ISO)

nuclear chromosome (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

pronucleus (ISO)

Molecular Function

histone binding (IBA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11136719	PMID:12082153	PMID:12138188	PMID:19946888	PMID:21795393	PMID:27737959

Genomics

Comparative Map Data

Ncapd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,655,051 - 159,677,938 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,655,051 - 159,677,938 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,968,814 - 157,992,314 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,968,815 - 157,992,020 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	164,197,880 - 164,220,783 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,980,795 - 160,003,698 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,616,789 - 158,639,664 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,682,855 - 157,705,903 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,683,077 - 157,704,596 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,700,039 - 224,722,952 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	161,288,671 - 161,310,417 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,705,847 - 146,728,900 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

NCAPD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,494,102 - 6,531,955 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,493,356 - 6,531,970 (+)	Ensembl			hg38	GRCh38
GRCh37	12	6,603,268 - 6,641,121 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,473,561 - 6,511,075 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	8,220,214 - 8,257,993 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,457,493 - 6,495,376 (+)	NCBI		HuRef
CHM1_1	12	6,602,311 - 6,640,139 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,504,453 - 6,542,311 (+)	NCBI		T2T-CHM13v2.0

Ncapd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	125,144,970 - 125,169,062 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	125,144,970 - 125,168,664 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	125,168,007 - 125,192,100 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	125,168,007 - 125,191,701 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	125,118,025 - 125,141,604 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	125,133,626 - 125,157,205 (-)	NCBI		MGSCv36	mm8
Celera	6	126,837,862 - 126,861,472 (-)	NCBI		Celera
Cytogenetic Map	6	F2- F3	NCBI
cM Map	6	59.32	NCBI

Ncapd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,137,216 - 4,160,550 (+)	Ensembl
ChiLan1.0	NW_004955413	4,136,492 - 4,160,550 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCAPD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,055,004 - 12,093,709 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,051,859 - 12,090,466 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	6,623,568 - 6,662,741 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,540,750 - 6,580,206 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,540,750 - 6,580,206 (+)	Ensembl			panPan2	panpan1.1

NCAPD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,475,145 - 38,497,818 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,475,155 - 38,496,312 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,118,830 - 8,141,521 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,829,714 - 38,852,404 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,829,725 - 38,852,387 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,701,720 - 38,724,405 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,743,262 - 38,765,950 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,597,525 - 7,620,214 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ncapd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,582,878 - 102,608,249 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	1,250,495 - 1,275,769 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	1,250,442 - 1,275,823 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCAPD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	64,136,505 - 64,167,410 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	64,136,505 - 64,167,410 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,432,917 - 66,443,817 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCAPD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,534,243 - 6,566,515 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,535,282 - 6,566,546 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	1,659,905 - 1,692,279 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncapd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,230,577 - 3,256,407 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	3,229,091 - 3,256,631 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ncapd2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	22,710,429 - 22,731,332 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ncapd2
68 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	44
Count of miRNA genes:	33
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000025889
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH129677

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	159,655,165 - 159,655,347 (+)	Marker Load Pipeline
mRatBN7.2	4	157,968,931 - 157,969,114 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,682,970 - 157,683,151	NCBI	Rnor6.0
Rnor_5.0	4	224,700,154 - 224,700,335	UniSTS	Rnor5.0
RGSC_v3.4	4	161,288,789 - 161,288,970	UniSTS	RGSC3.4
Celera	4	146,705,962 - 146,706,143	UniSTS
RH 3.4 Map	4	1004.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

BE107832

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,977,269 - 157,977,465 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,691,305 - 157,691,500	NCBI	Rnor6.0
Rnor_5.0	4	224,708,490 - 224,708,685	UniSTS	Rnor5.0
RGSC_v3.4	4	161,297,125 - 161,297,320	UniSTS	RGSC3.4
Celera	4	146,714,302 - 146,714,497	UniSTS
RH 3.4 Map	4	1003.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH139810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	159,678,999 - 159,679,700 (+)	Marker Load Pipeline
mRatBN7.2	4	157,992,767 - 157,993,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,706,802 - 157,707,502	NCBI	Rnor6.0
Rnor_5.0	4	224,723,987 - 224,724,687	UniSTS	Rnor5.0
RGSC_v3.4	4	161,312,623 - 161,313,323	UniSTS	RGSC3.4
Celera	4	146,729,799 - 146,730,499	UniSTS
RH 3.4 Map	4	1003.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

UniSTS:235556

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,970,683 - 157,970,787 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,684,720 - 157,684,823	NCBI	Rnor6.0
Rnor_5.0	4	224,701,904 - 224,702,007	UniSTS	Rnor5.0
RGSC_v3.4	4	161,290,539 - 161,290,642	UniSTS	RGSC3.4
Celera	4	146,707,712 - 146,707,815	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001065923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_575668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000083016 ⟹ ENSRNOP00000069882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,655,051 - 159,677,938 (-)	Ensembl
mRatBN7.2 Ensembl	4	157,968,815 - 157,992,020 (-)	Ensembl
Rnor_6.0 Ensembl	4	157,683,077 - 157,704,596 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137402 ⟹ ENSRNOP00000102647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,655,051 - 159,677,938 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161204 ⟹ ENSRNOP00000102742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,655,051 - 159,675,638 (-)	Ensembl

RefSeq Acc Id:

NM_001399442 ⟹ NP_001386371

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,677,938 (-)	NCBI
mRatBN7.2	4	157,968,817 - 157,991,706 (-)	NCBI

RefSeq Acc Id:

XM_039108815 ⟹ XP_038964743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,676,224 (-)	NCBI
mRatBN7.2	4	157,968,814 - 157,990,369 (-)	NCBI

RefSeq Acc Id:

XM_039108816 ⟹ XP_038964744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,673,579 (-)	NCBI
mRatBN7.2	4	157,968,814 - 157,987,359 (-)	NCBI

RefSeq Acc Id:

XM_039108817 ⟹ XP_038964745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,664,716 (-)	NCBI
mRatBN7.2	4	157,968,814 - 157,978,494 (-)	NCBI

RefSeq Acc Id:

XM_063286359 ⟹ XP_063142429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,676,224 (-)	NCBI

RefSeq Acc Id:

XM_063286360 ⟹ XP_063142430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,569 - 159,676,802 (-)	NCBI

RefSeq Acc Id:

XM_575668 ⟹ XP_575668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,655,051 - 159,676,802 (-)	NCBI
mRatBN7.2	4	157,968,814 - 157,991,733 (-)	NCBI
Rnor_6.0	4	157,682,855 - 157,705,903 (-)	NCBI
Rnor_5.0	4	224,700,039 - 224,722,952 (-)	NCBI
RGSC_v3.4	4	161,288,671 - 161,310,417 (-)	RGD

Sequence:

show sequence

CCACACCCTCGCCTGTTTGCCCCGCCTCCGGTGCTGTGATTGGTCGACTCCTCCAGCCTCCATC
GCGATTGGCCTCCCGGCAGCCGTTGAGCGGGGGATCTCCAGTTGAAGAAGCGGCGGGTGAGGGG
TGTCGGAGGTGTTCAGGTAAACCAGTGGGAGAAAGATGTCTCCCCACAACTTTGAGTTCCACCT
GCCCTTATCTCCAGAGGAGCTGCTGAAAAGTAGAGGTGTGAATCAGTATGTTGTTCAGGAGGTA
CTACCCATCAAGCATCTTCCAACCCAGCTTAGAGCATTTCAGTCTGCCTTCCGAGCTCAGGGGC
CCCTGGCCATACTGGACCACTTCGATACAATCTACAGCATTATACATCACTTTCGAAGTATAGA
ACCTGGCCTCAAGGAAGACACCCTGGAATTCCTGATGAAAGTGGTATCCTGCCACTCCCAGGAA
CTGTCATCCATCCTGGATGACGCAGCTTTGAGTGGATCAGATAGAAGCGCCCACCTAAATGCCC
TCAAAATGAACTGCTATGCCCTGATACGCCTCTTGGAGTCCTTTGAGAATATGACCAGCCAGAC
AGGCCTCATTGACCTGGACATTGGTGGGAAGGGTAAGAAAGCCCGGGCCAAAACAGCTCTTGGC
TTTGTCTGGGAGGAAGAGAGGCAACCAGTCCTTGAGCTTTTAACACAGCTGCTCCAGCTGGACA
TTCGTCACTTGTGGAGCCACTCGGTAATTGAAGAGGAATTTGTCAGTTTGGTTACTGGCTGTTG
CTACCGCCTGTTGGAGAATCCCACCATTAGCCACCAGAAGAACCGCTCCACCAAGGAGGCCATA
GCACACCTGCTTGGGGTGGCCTTGGTCCGCTACAACCATATGCTCAGTGCGACCGTGAAGATCA
TCCAGATGCTACAGCACTTTGAGCACCTGCCCTCTGTCCTGGTGGCAGCTGTGACTCTGTGGGC
AACGGATTACGGAATGAAGAGCATAGTGGGAGAGATCGTAAGAGAGATTGGACAGAAGTGTCCA
CAGGAGATGAGTCGAGACACAGCAGGGGCAAAGGGCTTTGCTGCTTTCCTCACTGAGCTGGCAG
AGCGAATCCCAGCTGCCCTGATGTCCAGCATGTGCATGTTGCTAGATCATCTGGATGGAGAGAA
TTATATGATGCGCAATGCTGTGTTAGCAGCTATGGCCGAGATGATACTCCAGGTTCTAAATGGT
GACCAATTAGAAGAATCGGCCCGAGAAACCAGAGATCAGTTCTTGGACATCTTGCAAGCTCATG
GGCATGATGTGAACTCCTTTGTTCGAAGCCGTGTTTTACAACTCTTTACCCGAATTGTCCAACA
AAAGGCGCTCCCCCTGACCCGTTTCCAGGCAGTGGTGGCCTTAGCAGTGGGACGTCTGGCAGAC
AAGTCGGTGCTGGTGTGTAAAAATGCGATTCAGCTGCTGGCCAGCTTTCTAGCCAACAATCCCT
TTTCCTGCAAGCTTAGTGATACCGACCTTGCTGGGCCACTGCAGAAGGAGATTCAGAAGTTACA
AGAAATGAGAGCCCAGAGGCGGACTGCAGCTGCGTCTGCAGCACTAGACTCAGAGGAAGAATGG
GAGGCCATGTTGCCAGAACTGAAGTCTACTGTGCAGCAGCTTCTGAAGCTTCCCCAAGAAGAGG
CAGAGCAGCAGATTGCCGATGGAGAGACTGCGGAGGAAGTGAAAGGACGCATCCACCAACTGCT
TGCCAGAGCTAGTTACAAACAGGCCATTCTTCTCACTCGAGAAGCTACCAGTCGCTTCCAGGAG
TCTGAACCCTTCAGTCACACAGAGCCAGAGGAGAAGGACTTCCTGAATCTCTTGGGTGTCATCT
TCAAAGGCCCTGAAGCTTCCACACACGAATCTCCTAGGCACACAGATCCAGGGCTAACTGGCAG
TAAAGACTCTCCTAGTGTGCCTGAGCCTGAGGGGTCCCAGAGGGACGATGAGCTGCTGAAGCAG
GAGATGCTGGTGCAGTACCTGCAGGATGCCTACAGCTTCTCCCAGAAGATCACAGAAGCCATTG
GCGTCATCAGCAAGATGATGTATGAGAACACAACTACAGTGGTGCAGGAGGTGATTGAGTTCTT
TGTGATGGTATTCCAATTTGGGGTACCCCAGGCCCTGTTTGGGGTACGCCGCATGCTGCCTCTC
ATCTGGTCTAAGGAGCTTGGTGTCCGGGAAGCTGTCCTTAATGCATACCGCCAACTGTACCTCA
GCCCGAAAGGGGACTCAGCCAGAGCCACAGCGCAGGCCTTGATTCAGAACCTCTCGTTGCTGTT
AGTAGATGCCTCCGTCGGGACCATTCAGTGTCTTGAAGAAATTCTTTGTGAGTTTGTGCAGAAG
GATGAGATAAAGCCAGCAGTGATCCAGCTGCTGTGGGAACGGGCAACGGAGAAGGTCCCGTGCT
CTCCTCTGGAGCGCTGTTCCTCTGTCATGCTTCTTGGCATGATGGCACGAGGAAAACCAGAAAT
TGTAGGAAGCAACTTAGACACCCTGGTGAAGGTAGGGCTGGATGAGAAGTTTCCACAGGACTAC
AGGCTGGCCCAGCAGGTGTGCCTCGCCATTGCCAACATCTCGGACAGGAGGAAGCCTTCCCTGG
GTGAACGTCACCCTCCCTTCCGGCTGCCTCAGGAGCACAAGTTGTTTGAACGACTTCAGGAGAT
GGTCACAAAGGGCTTTGCACACCCAGATCCCTTCTGGATCCCATTCAAAGAGGTGGCAGTGACC
CTGACTTACNCATTGGCAGAGGGGCCTGACGTGATCTGTTCCCAGATGCTGCAAGGCTGTGCAA
AGCAAGCCTTGGAGAAACTTGAGAAGAATACCACTGAGGGGGACTCCAAGGAAACAGCCCCTAA
GCTCCCCACGTTCCTGCTGATGAACCTGCTCTCCCTGGCTGGGGATGTGGCCCTACAGCAGCTG
GTCCATTTGGAACAGGCTGTGAGCGGAGAGCTGGGTCGGCGGCGAGTTCTTCGAGAGGAGCAGG
AGCACAGGACCAAGGTCCCCAAGGAGAAGACCACAAGCTCTGAAACAACAATGGAGGAAGAACT
GGGGCTGGTGGGGGCCACTGCTGATGACACGGAGGCGGAGCTCGTCCGGAGCATCTGTGAGAAG
GAACTGTTGGATGGCACTCAGGTACTCGCTGCCTTTGTTCCACTGCTGCTTAAAGTCTGCAACA
ACCCTGGGGCATACAGCAACCCAGAGCTCTCTGCAGCTGCTTCTCTGGCCCTTGGCAAGTTCTG
CATGATCAGTGCCCCTTTCTGCGACTCCCAGCTCCGTCTTCTGTTCACCATGCTTGAGAAGTCT
TCACTGCCCACTGTGCGGTCTAACCTCATGGTTGCCACTGGGGATCTGGCTATCCGCTTCCCTA
ACCTGGTGGATCCCTGGACTCCCCATCTATATGCCCGCCTCCGAGATCCAGCTCAGCAGGTGCG
GAGGACAGCGGGGCTGGTGATGACGCACCTGATCCTGAAGGACATGGTGAAAGTGAAGGGACAG
GTGAGCGAGATGGCCGTGCTGCTCATTGACCCTGTGCCTCAGATTGCTGCCTTGGCCAAGAATT
TCTTCAATGAGCTCTCCCACAAGGGCAATGCAATCTATAATCTCCTCCCTGATATCATCAGTCG
CCTGTCAGACCCAGAGGGTGGAGTGGGGGAGGAGCCCTTCCACACCATCATGAAGCAGCTCCTC
TCCTACATCACCAAGGACAAGCAGACTGAGAGCTTGGTAGAGAAACTGTGTCAGCGGTTCCGCA
CAGCCCGAACTGAGCGTCAGTACCGGGATCTGGCCTACTGTGTGTCCCAGCTGCCCCTCACAGA
GCGAGGCCTCCACAAAATGCTGGACAACTTTGACTGCTTTGGCGATAAGCTGATAGATGAGTCT
GTCTTCAGTGCTTTCTTGTCAATTGTGGGCAAACTGCGTCGTGGGGCCAAGCCTGAGGGCAAGG
CTGTAATAGATGAATTTGAGCAGAAGCTTCGTGCCTGTCACACCAGAGGCATGGATGGAATAGA
GGAGCTTGAAACTGGCCAAGGAGGCAGCCAGCGGGCCCTGTCTGCCAAGAAACCCTCCGCCGTC
TCAAGGCAACAGCCTCTGACTTCTGTAGACTCAGACAATGACTTTGTCACACCTAAGCCTCGAC
GTACCAAACCCCGTCGTCCACAAACTCAGCAACGCAAGTCCCAGAGGAAAGCCAAAGTTGTCTT
CTCAAGTGACGAGTCCAGTGAAGATGAACTTTCAGCGGAGATGACCGAAGAAGAGACACCCAAG
AAAACCACCCCCATCCGCAGAGCATCTGCGCAAAGACACAGGTCCTAGGAGCTGCCTTTGCCTA
TTCCCATCCCTGCTGTGCAGGGTATCTTACTGAATGATCGAGAATTCAACGCCCCCCCCCCCCT
TGGAAAATACTTGTTGCCTCCTTGTTTTTAACATGTAAATGGTCTTTTCGAGCAAGGCCTTTCT
CTTAGAGCCCCTGACTGCTACTTTCCAAGATCCAATCACCATGTTTTCTAGTGAATAAATGTTT
TTATATACTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001386371	(Get FASTA)	NCBI Sequence Viewer
	XP_038964743	(Get FASTA)	NCBI Sequence Viewer
	XP_038964744	(Get FASTA)	NCBI Sequence Viewer
	XP_038964745	(Get FASTA)	NCBI Sequence Viewer
	XP_063142429	(Get FASTA)	NCBI Sequence Viewer
	XP_063142430	(Get FASTA)	NCBI Sequence Viewer
	XP_575668	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069882
	ENSRNOP00000069882.3
	ENSRNOP00000102647.1
	ENSRNOP00000102742
	ENSRNOP00000102742.1

RefSeq Acc Id:	XP_575668 ⟸ XM_575668
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWH3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPHNFEFHLPLSPEELLKSRGVNQYVVQEVLPIKHLPTQLRAFQSAFRAQGPLAILDHFDTIY SIIHHFRSIEPGLKEDTLEFLMKVVSCHSQELSSILDDAALSGSDRSAHLNALKMNCYALIRLL ESFENMTSQTGLIDLDIGGKGKKARAKTALGFVWEEERQPVLELLTQLLQLDIRHLWSHSVIEE EFVSLVTGCCYRLLENPTISHQKNRSTKEAIAHLLGVALVRYNHMLSATVKIIQMLQHFEHLPS VLVAAVTLWATDYGMKSIVGEIVREIGQKCPQEMSRDTAGAKGFAAFLTELAERIPAALMSSMC MLLDHLDGENYMMRNAVLAAMAEMILQVLNGDQLEESARETRDQFLDILQAHGHDVNSFVRSRV LQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDTDLAG PLQKEIQKLQEMRAQRRTAAASAALDSEEEWEAMLPELKSTVQQLLKLPQEEAEQQIADGETAE EVKGRIHQLLARASYKQAILLTREATSRFQESEPFSHTEPEEKDFLNLLGVIFKGPEASTHESP RHTDPGLTGSKDSPSVPEPEGSQRDDELLKQEMLVQYLQDAYSFSQKITEAIGVISKMMYENTT TVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKELGVREAVLNAYRQLYLSPKGDSARATAQ ALIQNLSLLLVDASVGTIQCLEEILCEFVQKDEIKPAVIQLLWERATEKVPCSPLERCSSVMLL GMMARGKPEIVGSNLDTLVKVGLDEKFPQDYRLAQQVCLAIANISDRRKPSLGERHPPFRLPQE HKLFERLQEMVTKGFAHPDPFWIPFKEVAVTLTYXLAEGPDVICSQMLQGCAKQALEKLEKNTT EGDSKETAPKLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELGRRRVLREEQEHRTKVPKEKTT SSETTMEEELGLVGATADDTEAELVRSICEKELLDGTQVLAAFVPLLLKVCNNPGAYSNPELSA AASLALGKFCMISAPFCDSQLRLLFTMLEKSSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLYA RLRDPAQQVRRTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPVPQIAALAKNFFNELSHKGNAI YNLLPDIISRLSDPEGGVGEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTARTERQYRDLA YCVSQLPLTERGLHKMLDNFDCFGDKLIDESVFSAFLSIVGKLRRGAKPEGKAVIDEFEQKLRA CHTRGMDGIEELETGQGGSQRALSAKKPSAVSRQQPLTSVDSDNDFVTPKPRRTKPRRPQTQQR KSQRKAKVVFSSDESSEDELSAEMTEEETPKKTTPIRRASAQRHRS hide sequence

Ensembl Acc Id:

ENSRNOP00000069882 ⟸ ENSRNOT00000083016

RefSeq Acc Id:	XP_038964743 ⟸ XM_039108815
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964744 ⟸ XM_039108816
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038964745 ⟸ XM_039108817
- Peptide Label:	isoform X6

RefSeq Acc Id:	NP_001386371 ⟸ NM_001399442
- UniProtKB:	A6ILS7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142429 ⟸ XM_063286359
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063142430 ⟸ XM_063286360
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000102742 ⟸ ENSRNOT00000161204

Ensembl Acc Id:

ENSRNOP00000102647 ⟸ ENSRNOT00000137402

Protein Domains

Condensin complex subunit 1 C-terminal Condensin complex subunit 1 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWH3-F1-model_v2	AlphaFold	A0A0G2JWH3	1-1389	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562596	AgrOrtholog
BioCyc Gene	G2FUF-43008	BioCyc
Ensembl Genes	ENSRNOG00000055300	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000083016	ENTREZGENE
	ENSRNOT00000083016.3	UniProtKB/TrEMBL
	ENSRNOT00000137402.1	UniProtKB/TrEMBL
	ENSRNOT00000161204	ENTREZGENE
	ENSRNOT00000161204.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	CND1/NCAPD3	UniProtKB/TrEMBL
	Cnd1_C	UniProtKB/TrEMBL
	Condensin_cplx_su1_N	UniProtKB/TrEMBL
	Condensin_D2_su	UniProtKB/TrEMBL
NCBI Gene	362438	ENTREZGENE
PANTHER	PTHR14222	UniProtKB/TrEMBL
	PTHR14222:SF2	UniProtKB/TrEMBL
Pfam	Cnd1	UniProtKB/TrEMBL
	Cnd1_N	UniProtKB/TrEMBL
PhenoGen	Ncapd2	PhenoGen
PIRSF	Condensin_D2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000055300	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A0G2JWH3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LB13_RAT	UniProtKB/TrEMBL
	A0ABK0LBT2_RAT	UniProtKB/TrEMBL
	A6ILS7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Ncapd2	non-SMC condensin I complex, subunit D2	RGD1562596_predicted	similar to mKIAA0159 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562596_predicted	similar to mKIAA0159 protein (predicted)	LOC362438	similar to mKIAA0159 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362438	similar to mKIAA0159 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM